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@article{DBLP:journals/combinatorics/FosterY24,
  author       = {Leigh Foster and
                  Benjamin Young},
  title        = {The Squish Map and the {\textdollar}SL{\_}2{\textdollar} Double Dimer
                  Model},
  journal      = {Electron. J. Comb.},
  volume       = {31},
  number       = {1},
  year         = {2024},
  url          = {https://doi.org/10.37236/12447},
  doi          = {10.37236/12447},
  timestamp    = {Fri, 29 Mar 2024 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/combinatorics/FosterY24.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/combinatorics/MusikerW23,
  author       = {Gregg Musiker and
                  Kayla Wright},
  title        = {Mixed Dimer Configuration Model in Type {D} Cluster Algebras},
  journal      = {Electron. J. Comb.},
  volume       = {30},
  number       = {2},
  year         = {2023},
  url          = {https://doi.org/10.37236/10437},
  doi          = {10.37236/10437},
  timestamp    = {Thu, 18 May 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/combinatorics/MusikerW23.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcisd/HuangFWWZLDS23,
  author       = {Fengjuan Huang and
                  Xinjie Fan and
                  Ying Wang and
                  Chuang Wang and
                  Yu Zou and
                  Jiangfang Lian and
                  Feng Ding and
                  Yunxiang Sun},
  title        = {Unveiling Medin Folding and Dimerization Dynamics and Conformations
                  via Atomistic Discrete Molecular Dynamics Simulations},
  journal      = {J. Chem. Inf. Model.},
  volume       = {63},
  number       = {20},
  pages        = {6376--6385},
  year         = {2023},
  url          = {https://doi.org/10.1021/acs.jcim.3c01267},
  doi          = {10.1021/ACS.JCIM.3C01267},
  timestamp    = {Tue, 28 Nov 2023 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/jcisd/HuangFWWZLDS23.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcisd/OliveiraRVFM23,
  author       = {Nuno F. B. Oliveira and
                  Filipe E. P. Rodrigues and
                  Jo{\~{a}}o N. M. Vitorino and
                  Patr{\'{\i}}cia F. N. Fa{\'{\i}}sca and
                  Miguel Machuqueiro},
  title        = {Interfacial Dynamics and Growth Modes of {\(\beta\)}\({}_{\mbox{2}}\)-Microglobulin
                  Dimers},
  journal      = {J. Chem. Inf. Model.},
  volume       = {63},
  number       = {14},
  pages        = {4447--4457},
  year         = {2023},
  url          = {https://doi.org/10.1021/acs.jcim.3c00399},
  doi          = {10.1021/ACS.JCIM.3C00399},
  timestamp    = {Mon, 05 Feb 2024 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/jcisd/OliveiraRVFM23.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcisd/PradhanRB23,
  author       = {Sweta Pradhan and
                  Rajendra Rath and
                  Mithun Biswas},
  title        = {{GB1} Dimerization in Crowders: {A} Multiple Resolution Approach},
  journal      = {J. Chem. Inf. Model.},
  volume       = {63},
  number       = {5},
  pages        = {1570--1577},
  year         = {2023},
  url          = {https://doi.org/10.1021/acs.jcim.3c00012},
  doi          = {10.1021/ACS.JCIM.3C00012},
  timestamp    = {Tue, 28 Mar 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/jcisd/PradhanRB23.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcisd/ZhangLZ23,
  author       = {Xue Zhang and
                  Lei Li and
                  Qingchuan Zheng},
  title        = {Dissecting the Effect of Temperature on Hyperthermophilic Pf2001 Esterase
                  Dimerization by Molecular Dynamics},
  journal      = {J. Chem. Inf. Model.},
  volume       = {63},
  number       = {15},
  pages        = {4762--4771},
  year         = {2023},
  url          = {https://doi.org/10.1021/acs.jcim.3c00415},
  doi          = {10.1021/ACS.JCIM.3C00415},
  timestamp    = {Sat, 14 Oct 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/jcisd/ZhangLZ23.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ploscb/ChenFLWMB23,
  author       = {Daipeng Chen and
                  Zary Forghany and
                  Xinxin Liu and
                  Haijiang Wang and
                  Roeland M. H. Merks and
                  David A. Baker},
  title        = {A new model of Notch signalling: Control of Notch receptor cis-inhibition
                  via Notch ligand dimers},
  journal      = {PLoS Comput. Biol.},
  volume       = {19},
  number       = {1},
  year         = {2023},
  url          = {https://doi.org/10.1371/journal.pcbi.1010169},
  doi          = {10.1371/JOURNAL.PCBI.1010169},
  timestamp    = {Sat, 29 Apr 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/ploscb/ChenFLWMB23.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2305-00072,
  author       = {Qiang Du and
                  Huaiyu Li and
                  Michael I. Weinstein and
                  Lu Zhang},
  title        = {Discontinuous Galerkin methods for a first-order semi-linear hyperbolic
                  continuum model of a topological resonator dimer array},
  journal      = {CoRR},
  volume       = {abs/2305.00072},
  year         = {2023},
  url          = {https://doi.org/10.48550/arXiv.2305.00072},
  doi          = {10.48550/ARXIV.2305.00072},
  eprinttype    = {arXiv},
  eprint       = {2305.00072},
  timestamp    = {Wed, 21 Jun 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/corr/abs-2305-00072.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcisd/ChenYCYWCGP22,
  author       = {Xin Chen and
                  Yuan Yuan and
                  Yichi Chen and
                  Jin Yu and
                  Jingzhou Wang and
                  Jianfang Chen and
                  Yanzhi Guo and
                  Xuemei Pu},
  title        = {Biased Activation Mechanism Induced by {GPCR} Heterodimerization:
                  Observations from {\(\mu\)}OR/{\(\delta\)}OR Dimers},
  journal      = {J. Chem. Inf. Model.},
  volume       = {62},
  number       = {22},
  pages        = {5581--5600},
  year         = {2022},
  url          = {https://doi.org/10.1021/acs.jcim.2c00962},
  doi          = {10.1021/ACS.JCIM.2C00962},
  timestamp    = {Sun, 15 Jan 2023 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/jcisd/ChenYCYWCGP22.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcisd/DongZCSD22,
  author       = {Wanqian Dong and
                  Rui Zhou and
                  Jiawen Chen and
                  Zhengyu Shu and
                  Mojie Duan},
  title        = {Phosphorylation Regulation on the Homo-Dimeric Binding of Transactive
                  Response DNA-Binding Protein},
  journal      = {J. Chem. Inf. Model.},
  volume       = {62},
  number       = {21},
  pages        = {5267--5275},
  year         = {2022},
  url          = {https://doi.org/10.1021/acs.jcim.1c01224},
  doi          = {10.1021/ACS.JCIM.1C01224},
  timestamp    = {Sun, 15 Jan 2023 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/jcisd/DongZCSD22.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcisd/LlanosVMEFGM22,
  author       = {Manuel A. Llanos and
                  Clara Ventura and
                  Pedro Mart{\'{\i}}n and
                  Nicolas Enrique and
                  Juan I. Felice and
                  Luciana Gavernet and
                  Ver{\'{o}}nica Milesi},
  title        = {Novel Dimeric hHv1 Model and Structural Bioinformatic Analysis Reveal
                  an ATP-Binding Site Resulting in a Channel Activating Effect},
  journal      = {J. Chem. Inf. Model.},
  volume       = {62},
  number       = {13},
  pages        = {3200--3212},
  year         = {2022},
  url          = {https://doi.org/10.1021/acs.jcim.1c01396},
  doi          = {10.1021/ACS.JCIM.1C01396},
  timestamp    = {Tue, 20 Feb 2024 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/jcisd/LlanosVMEFGM22.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2212-14328,
  author       = {Lei Zhang and
                  Pingwen Zhang and
                  Xiangcheng Zheng},
  title        = {A model-free shrinking-dimer saddle dynamics for finding saddle point
                  and solution landscape},
  journal      = {CoRR},
  volume       = {abs/2212.14328},
  year         = {2022},
  url          = {https://doi.org/10.48550/arXiv.2212.14328},
  doi          = {10.48550/ARXIV.2212.14328},
  eprinttype    = {arXiv},
  eprint       = {2212.14328},
  timestamp    = {Fri, 12 May 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/corr/abs-2212-14328.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcisd/YamauchiO21,
  author       = {Masataka Yamauchi and
                  Hisashi Okumura},
  title        = {Dimerization of {\(\alpha\)}-Synuclein Fragments Studied by Isothermal-Isobaric
                  Replica-Permutation Molecular Dynamics Simulation},
  journal      = {J. Chem. Inf. Model.},
  volume       = {61},
  number       = {3},
  pages        = {1307--1321},
  year         = {2021},
  url          = {https://doi.org/10.1021/acs.jcim.0c01056},
  doi          = {10.1021/ACS.JCIM.0C01056},
  timestamp    = {Wed, 07 Apr 2021 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/jcisd/YamauchiO21.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ploscb/LindstromCGHT21,
  author       = {Michael R. Lindstrom and
                  Manuel B. Chavez and
                  Elijah A. Gross{-}Sable and
                  Eric Y. Hayden and
                  David B. Teplow},
  title        = {From reaction kinetics to dementia: {A} simple dimer model of Alzheimer's
                  disease etiology},
  journal      = {PLoS Comput. Biol.},
  volume       = {17},
  number       = {7},
  year         = {2021},
  url          = {https://doi.org/10.1371/journal.pcbi.1009114},
  doi          = {10.1371/JOURNAL.PCBI.1009114},
  timestamp    = {Sun, 02 Oct 2022 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/ploscb/LindstromCGHT21.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ToivonenDTU20,
  author       = {Jarkko Toivonen and
                  Pratyush K. Das and
                  Jussi Taipale and
                  Esko Ukkonen},
  title        = {{MODER2:} first-order Markov modeling and discovery of monomeric and
                  dimeric binding motifs},
  journal      = {Bioinform.},
  volume       = {36},
  number       = {9},
  pages        = {2690--2696},
  year         = {2020},
  url          = {https://doi.org/10.1093/bioinformatics/btaa045},
  doi          = {10.1093/BIOINFORMATICS/BTAA045},
  timestamp    = {Fri, 14 May 2021 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/ToivonenDTU20.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcisd/RaoDDOCE20,
  author       = {Rajas Rao and
                  Julien Diharce and
                  B{\'{e}}r{\'{e}}nice Dugu{\'{e}} and
                  Mariano A. Ostuni and
                  Fr{\'{e}}d{\'{e}}ric Cadet and
                  Catherine Etchebest},
  title        = {Versatile Dimerisation Process of Translocator Protein {(TSPO)} Revealed
                  by an Extensive Sampling Based on a Coarse-Grained Dynamics Study},
  journal      = {J. Chem. Inf. Model.},
  volume       = {60},
  number       = {8},
  pages        = {3944--3957},
  year         = {2020},
  url          = {https://doi.org/10.1021/acs.jcim.0c00246},
  doi          = {10.1021/ACS.JCIM.0C00246},
  timestamp    = {Thu, 14 Oct 2021 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/jcisd/RaoDDOCE20.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcisd/ThapaBB20,
  author       = {Gauri Thapa and
                  Akash Bhattacharya and
                  Swati Bhattacharya},
  title        = {Dimeric Hold States of Anti-HIV Protein {SAMHD1} are Redox Tunable},
  journal      = {J. Chem. Inf. Model.},
  volume       = {60},
  number       = {12},
  pages        = {6377--6391},
  year         = {2020},
  url          = {https://doi.org/10.1021/acs.jcim.0c00629},
  doi          = {10.1021/ACS.JCIM.0C00629},
  timestamp    = {Wed, 01 Sep 2021 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/jcisd/ThapaBB20.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@phdthesis{DBLP:phd/basesearch/Toivonen19,
  author       = {Jarkko Toivonen},
  title        = {Modeling and learning monomeric and dimeric transcription factor binding
                  motifs},
  school       = {University of Helsinki, Finland},
  year         = {2019},
  url          = {http://hdl.handle.net/10138/306784},
  timestamp    = {Fri, 20 Jan 2023 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/phd/basesearch/Toivonen19.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcc/SilvaH19,
  author       = {Natieli Alves da Silva and
                  Roberto Luiz Andrade Haiduke},
  title        = {Infrared intensity analysis of hydroxyl stretching modes in carboxylic
                  acid dimers by means of the charge-charge flux-dipole flux model},
  journal      = {J. Comput. Chem.},
  volume       = {40},
  number       = {28},
  pages        = {2482--2490},
  year         = {2019},
  url          = {https://doi.org/10.1002/jcc.26024},
  doi          = {10.1002/JCC.26024},
  timestamp    = {Thu, 14 Oct 2021 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/jcc/SilvaH19.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcisd/ChojeckiRK19,
  author       = {Michal Chojecki and
                  Dorota Rutkowska{-}Zbik and
                  Tatiana Korona},
  title        = {Dimerization Behavior of Methyl Chlorophyllide a as the Model of Chlorophyll
                  a in the Presence of Water Molecules - Theoretical Study},
  journal      = {J. Chem. Inf. Model.},
  volume       = {59},
  number       = {5},
  pages        = {2123--2140},
  year         = {2019},
  url          = {https://doi.org/10.1021/acs.jcim.8b00984},
  doi          = {10.1021/ACS.JCIM.8B00984},
  timestamp    = {Tue, 01 Jun 2021 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/jcisd/ChojeckiRK19.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcisd/ErolCD19,
  author       = {Ismail Erol and
                  Bunyemin Cosut and
                  Serdar Durdagi},
  title        = {Toward Understanding the Impact of Dimerization Interfaces in Angiotensin
                  {II} Type 1 Receptor},
  journal      = {J. Chem. Inf. Model.},
  volume       = {59},
  number       = {10},
  pages        = {4314--4327},
  year         = {2019},
  url          = {https://doi.org/10.1021/acs.jcim.9b00294},
  doi          = {10.1021/ACS.JCIM.9B00294},
  timestamp    = {Tue, 01 Jun 2021 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/jcisd/ErolCD19.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcisd/KumarMS19,
  author       = {Abhishek Kumar and
                  Debaditya Mukherjee and
                  Priyadarshi Satpati},
  title        = {Mutations in Parkinson's Disease Associated Protein {DJ-1} Alter the
                  Energetics of {DJ-1} Dimerization},
  journal      = {J. Chem. Inf. Model.},
  volume       = {59},
  number       = {4},
  pages        = {1497--1507},
  year         = {2019},
  url          = {https://doi.org/10.1021/acs.jcim.8b00687},
  doi          = {10.1021/ACS.JCIM.8B00687},
  timestamp    = {Sat, 30 Sep 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/jcisd/KumarMS19.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcisd/LiJCAW19,
  author       = {Cheng{-}Dong Li and
                  Muhammad Junaid and
                  Hui Chen and
                  Arif Ali and
                  Dong{-}Qing Wei},
  title        = {Helix-Switch Enables {C99} Dimer Transition between the Multiple Conformations},
  journal      = {J. Chem. Inf. Model.},
  volume       = {59},
  number       = {1},
  pages        = {339--350},
  year         = {2019},
  url          = {https://doi.org/10.1021/acs.jcim.8b00559},
  doi          = {10.1021/ACS.JCIM.8B00559},
  timestamp    = {Tue, 01 Jun 2021 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/jcisd/LiJCAW19.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcisd/ZhangYXGLLP19,
  author       = {Fuhui Zhang and
                  Yuan Yuan and
                  Minghui Xiang and
                  Yanzhi Guo and
                  Menglong Li and
                  Yijing Liu and
                  Xuemei Pu},
  title        = {Molecular Mechanism Regarding Allosteric Modulation of Ligand Binding
                  and the Impact of Mutations on Dimerization for {CCR5} Homodimer},
  journal      = {J. Chem. Inf. Model.},
  volume       = {59},
  number       = {5},
  pages        = {1965--1976},
  year         = {2019},
  url          = {https://doi.org/10.1021/acs.jcim.8b00850},
  doi          = {10.1021/ACS.JCIM.8B00850},
  timestamp    = {Tue, 01 Jun 2021 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/jcisd/ZhangYXGLLP19.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcisd/Hadi-Alijanvand18,
  author       = {Hamid Hadi{-}Alijanvand and
                  Maryam Rouhani},
  title        = {Partner-Specific Prediction of Protein-Dimer Stability from Unbound
                  Structure of Monomer},
  journal      = {J. Chem. Inf. Model.},
  volume       = {58},
  number       = {3},
  pages        = {733--745},
  year         = {2018},
  url          = {https://doi.org/10.1021/acs.jcim.7b00606},
  doi          = {10.1021/ACS.JCIM.7B00606},
  timestamp    = {Mon, 26 Jun 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/jcisd/Hadi-Alijanvand18.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcisd/SalmasSSD18,
  author       = {Ramin Ekhteiari Salmas and
                  Philip Seeman and
                  Matthias Stein and
                  Serdar Durdagi},
  title        = {Structural Investigation of the Dopamine-2 Receptor Agonist Bromocriptine
                  Binding to Dimeric D2HighR and D2LowR States},
  journal      = {J. Chem. Inf. Model.},
  volume       = {58},
  number       = {4},
  pages        = {826--836},
  year         = {2018},
  url          = {https://doi.org/10.1021/acs.jcim.7b00722},
  doi          = {10.1021/ACS.JCIM.7B00722},
  timestamp    = {Tue, 01 Jun 2021 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/jcisd/SalmasSSD18.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jct/Melotti18,
  author       = {Paul Melotti},
  title        = {The free-fermionic {C2(1)} loop model, double dimers and Kashaev's
                  recurrence},
  journal      = {J. Comb. Theory, Ser. {A}},
  volume       = {158},
  pages        = {407--448},
  year         = {2018},
  url          = {https://doi.org/10.1016/j.jcta.2018.04.005},
  doi          = {10.1016/J.JCTA.2018.04.005},
  timestamp    = {Tue, 10 Jul 2018 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/jct/Melotti18.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jsiaml/ItanoIKMS18,
  author       = {Keiko Itano and
                  Takeshi Ito and
                  Shuji Kawasaki and
                  Yoshinori Murakami and
                  Takashi Suzuki},
  title        = {Mathematical modeling and analysis of ErbB3 and {EGFR} dimerization
                  process for the gefitinib resistance},
  journal      = {{JSIAM} Lett.},
  volume       = {10},
  pages        = {33--36},
  year         = {2018},
  url          = {https://doi.org/10.14495/jsiaml.10.33},
  doi          = {10.14495/JSIAML.10.33},
  timestamp    = {Wed, 17 Feb 2021 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/jsiaml/ItanoIKMS18.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/MaheshwariB17,
  author       = {Surabhi Maheshwari and
                  Michal Brylinski},
  title        = {Across-proteome modeling of dimer structures for the bottom-up assembly
                  of protein-protein interaction networks},
  journal      = {{BMC} Bioinform.},
  volume       = {18},
  number       = {1},
  pages        = {257:1--257:14},
  year         = {2017},
  url          = {https://doi.org/10.1186/s12859-017-1675-z},
  doi          = {10.1186/S12859-017-1675-Z},
  timestamp    = {Sun, 15 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bmcbi/MaheshwariB17.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcisd/KotsLVN17,
  author       = {Ekaterina D. Kots and
                  Sofya V. Lushchekina and
                  Sergey D. Varfolomeev and
                  Alexander V. Nemukhin},
  title        = {Role of Protein Dimeric Interface in Allosteric Inhibition of N-Acetyl-Aspartate
                  Hydrolysis by Human Aspartoacylase},
  journal      = {J. Chem. Inf. Model.},
  volume       = {57},
  number       = {8},
  pages        = {1999--2008},
  year         = {2017},
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  doi          = {10.1021/ACS.JCIM.7B00133},
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  biburl       = {https://dblp.org/rec/journals/jcisd/KotsLVN17.bib},
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@article{DBLP:journals/jcisd/LeeCWC17,
  author       = {Yie{-}Vern Lee and
                  Sy Bing Choi and
                  Habibah A. Wahab and
                  Yee{-}Siew Choong},
  title        = {Active Site Flexibility of \emph{Mycobacterium tuberculosis} Isocitrate
                  Lyase in Dimer Form},
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  doi          = {10.1021/ACS.JCIM.7B00265},
  timestamp    = {Mon, 28 Aug 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/jcisd/LeeCWC17.bib},
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}
@article{DBLP:journals/jcisd/SunCWCDXL17,
  author       = {Fude Sun and
                  Long Chen and
                  Peng Wei and
                  Mengya Chai and
                  Xiufang Ding and
                  Lida Xu and
                  Shi{-}Zhong Luo},
  title        = {Dimerization and Structural Stability of Amyloid Precursor Proteins
                  Affected by the Membrane Microenvironments},
  journal      = {J. Chem. Inf. Model.},
  volume       = {57},
  number       = {6},
  pages        = {1375--1387},
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  doi          = {10.1021/ACS.JCIM.7B00196},
  timestamp    = {Mon, 28 Aug 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/jcisd/SunCWCDXL17.bib},
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}
@article{DBLP:journals/jcisd/ZhangTLLHYLLZ17,
  author       = {Tingting Zhang and
                  Yuan{-}xin Tian and
                  Zhonghuang Li and
                  Siming Liu and
                  Xiang Hu and
                  Zichao Yang and
                  Xiaotong Ling and
                  Shuwen Liu and
                  Jiajie Zhang},
  title        = {Molecular Dynamics Study to Investigate the Dimeric Structure of the
                  Full-Length {\(\alpha\)}-Synuclein in Aqueous Solution},
  journal      = {J. Chem. Inf. Model.},
  volume       = {57},
  number       = {9},
  pages        = {2281--2293},
  year         = {2017},
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  doi          = {10.1021/ACS.JCIM.7B00210},
  timestamp    = {Mon, 28 Aug 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/jcisd/ZhangTLLHYLLZ17.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/LegrandLRVG16,
  author       = {Jonathan Legrand and
                  Jean{-}Benoist L{\'{e}}ger and
                  St{\'{e}}phane Robin and
                  Teva Vernoux and
                  Yann Gu{\'{e}}don},
  title        = {Modelling the influence of dimerisation sequence dissimilarities on
                  the auxin signalling network},
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  biburl       = {https://dblp.org/rec/journals/bmcsb/LegrandLRVG16.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcc/ChenBTZ16,
  author       = {Xi Chen and
                  Fu{-}Quan Bai and
                  Yongan Tang and
                  Hong{-}Xing Zhang},
  title        = {How the substituents in corannulene and sumanene derivatives alter
                  their molecular assemblings and charge transport properties? - {A}
                  theoretical study with a dimer model},
  journal      = {J. Comput. Chem.},
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  doi          = {10.1002/JCC.24271},
  timestamp    = {Thu, 14 Oct 2021 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/jcc/ChenBTZ16.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jct/KenyonP16,
  author       = {Richard W. Kenyon and
                  Robin Pemantle},
  title        = {Double-dimers, the Ising model and the hexahedron recurrence},
  journal      = {J. Comb. Theory, Ser. {A}},
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  pages        = {27--63},
  year         = {2016},
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  doi          = {10.1016/J.JCTA.2015.07.005},
  timestamp    = {Tue, 16 Feb 2021 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/jct/KenyonP16.bib},
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}
@article{DBLP:journals/jcisd/ZhouXHHPZYHJLZL15,
  author       = {Ran Zhou and
                  Yiqian Xie and
                  Hao Hu and
                  Guang Hu and
                  Viral Sanjay Patel and
                  Jin Zhang and
                  Kunqian Yu and
                  Yiran Huang and
                  Hualiang Jiang and
                  Zhongjie Liang and
                  Yujun George Zheng and
                  Cheng Luo},
  title        = {Molecular Mechanism underlying {PRMT1} Dimerization for {SAM} Binding
                  and Methylase Activity},
  journal      = {J. Chem. Inf. Model.},
  volume       = {55},
  number       = {12},
  pages        = {2623--2632},
  year         = {2015},
  url          = {https://doi.org/10.1021/acs.jcim.5b00454},
  doi          = {10.1021/ACS.JCIM.5B00454},
  timestamp    = {Sat, 30 May 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/jcisd/ZhouXHHPZYHJLZL15.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bcb/HashmiVKS14,
  author       = {Irina Hashmi and
                  Daniel Veltri and
                  Nadine Kabbani and
                  Amarda Shehu},
  editor       = {Pierre Baldi and
                  Wei Wang},
  title        = {Knowledge-based search and multi-objective filters: proposed structural
                  models of {GPCR} dimerization},
  booktitle    = {Proceedings of the 5th {ACM} Conference on Bioinformatics, Computational
                  Biology, and Health Informatics, {BCB} '14, Newport Beach, California,
                  USA, September 20-23, 2014},
  pages        = {279--288},
  publisher    = {{ACM}},
  year         = {2014},
  url          = {https://doi.org/10.1145/2649387.2649391},
  doi          = {10.1145/2649387.2649391},
  timestamp    = {Tue, 06 Nov 2018 16:59:10 +0100},
  biburl       = {https://dblp.org/rec/conf/bcb/HashmiVKS14.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcisd/WuSE13,
  author       = {Min Wu and
                  {\AA}ke Strid and
                  Leif A. Eriksson},
  title        = {Interactions and Stabilities of the {UV} {RESISTANCE} {LOCUS8} {(UVR8)}
                  Protein Dimer and Its Key Mutants},
  journal      = {J. Chem. Inf. Model.},
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  number       = {7},
  pages        = {1736--1746},
  year         = {2013},
  url          = {https://doi.org/10.1021/ci4001822},
  doi          = {10.1021/CI4001822},
  timestamp    = {Fri, 06 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/jcisd/WuSE13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ploscb/PangZ12,
  author       = {Xiaodong Pang and
                  Huan{-}Xiang Zhou},
  title        = {A Common Model for Cytokine Receptor Activation: Combined Scissor-Like
                  Rotation and Self-Rotation of Receptor Dimer Induced by Class {I}
                  Cytokine},
  journal      = {PLoS Comput. Biol.},
  volume       = {8},
  number       = {3},
  year         = {2012},
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  timestamp    = {Thu, 10 Sep 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/ploscb/PangZ12.bib},
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@article{DBLP:journals/cphysics/Otsuka11,
  author       = {Hiromi Otsuka},
  title        = {Phase transitions in square-lattice dimer model with anisotropic interactions},
  journal      = {Comput. Phys. Commun.},
  volume       = {182},
  number       = {9},
  pages        = {1888--1891},
  year         = {2011},
  url          = {https://doi.org/10.1016/j.cpc.2010.12.018},
  doi          = {10.1016/J.CPC.2010.12.018},
  timestamp    = {Sat, 30 Sep 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/cphysics/Otsuka11.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcisd/LanzarottiBEMT11,
  author       = {Esteban Lanzarotti and
                  Rolf R. Biekofsky and
                  Dario A. Estrin and
                  Marcelo A. Marti and
                  Adrian Gustavo Turjanski},
  title        = {Aromatic-Aromatic Interactions in Proteins: Beyond the Dimer},
  journal      = {J. Chem. Inf. Model.},
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  number       = {7},
  pages        = {1623--1633},
  year         = {2011},
  url          = {https://doi.org/10.1021/ci200062e},
  doi          = {10.1021/CI200062E},
  timestamp    = {Sat, 30 May 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/jcisd/LanzarottiBEMT11.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcisd/LiuLLZ11,
  author       = {Jing{-}Yuan Liu and
                  Zhaomin Li and
                  Huian Li and
                  Jian{-}Ting Zhang},
  title        = {Critical Residue That Promotes Protein Dimerization: {A} Story of
                  Partially Exposed Phe\({}^{\mbox{25}}\) in 14-3-3{\(\sigma\)}},
  journal      = {J. Chem. Inf. Model.},
  volume       = {51},
  number       = {10},
  pages        = {2612--2625},
  year         = {2011},
  url          = {https://doi.org/10.1021/ci200212y},
  doi          = {10.1021/CI200212Y},
  timestamp    = {Fri, 06 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/jcisd/LiuLLZ11.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcc/TognettiFA10,
  author       = {Vincent Tognetti and
                  Pascal Le Floch and
                  Carlo Adamo},
  title        = {How the choice of a computational model could rule the chemical interpretation:
                  The Ni(II) catalyzed ethylene dimerization as a case study},
  journal      = {J. Comput. Chem.},
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  number       = {5},
  pages        = {1053--1062},
  year         = {2010},
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  doi          = {10.1002/JCC.21392},
  timestamp    = {Sat, 30 May 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/jcc/TognettiFA10.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcisd/SippelS10,
  author       = {Martin Sippel and
                  Christoph A. Sotriffer},
  title        = {Molecular Dynamics Simulations of the {HIV-1} Integrase Dimerization
                  Interface: Guidelines for the Design of a Novel Class of Integrase
                  Inhibitors},
  journal      = {J. Chem. Inf. Model.},
  volume       = {50},
  number       = {4},
  pages        = {604--614},
  year         = {2010},
  url          = {https://doi.org/10.1021/ci900403s},
  doi          = {10.1021/CI900403S},
  timestamp    = {Fri, 06 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/jcisd/SippelS10.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cisis/ManioudakiP10,
  author       = {Maria Manioudaki and
                  Panayiota Poirazi},
  editor       = {Leonard Barolli and
                  Fatos Xhafa and
                  Salvatore Vitabile and
                  Hui{-}Huang Hsu},
  title        = {Modeling of Stress-induced Regulatory Cascades Involving Transcription
                  Factor Dimers},
  booktitle    = {{CISIS} 2010, The Fourth International Conference on Complex, Intelligent
                  and Software Intensive Systems, Krakow, Poland, 15-18 February 2010},
  pages        = {667--671},
  publisher    = {{IEEE} Computer Society},
  year         = {2010},
  url          = {https://doi.org/10.1109/CISIS.2010.171},
  doi          = {10.1109/CISIS.2010.171},
  timestamp    = {Fri, 24 Mar 2023 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/cisis/ManioudakiP10.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ploscb/MorraVC09,
  author       = {Giulia Morra and
                  Gennady Verkhivker and
                  Giorgio Colombo},
  title        = {Modeling Signal Propagation Mechanisms and Ligand-Based Conformational
                  Dynamics of the Hsp90 Molecular Chaperone Full-Length Dimer},
  journal      = {PLoS Comput. Biol.},
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  number       = {3},
  year         = {2009},
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  timestamp    = {Thu, 10 Sep 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/ploscb/MorraVC09.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/Radivoyevitch08,
  author       = {Tomas Radivoyevitch},
  title        = {Equilibrium model selection: dTTP induced {R1} dimerization},
  journal      = {{BMC} Syst. Biol.},
  volume       = {2},
  pages        = {15},
  year         = {2008},
  url          = {https://doi.org/10.1186/1752-0509-2-15},
  doi          = {10.1186/1752-0509-2-15},
  timestamp    = {Tue, 05 May 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bmcsb/Radivoyevitch08.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcamd/CuiMO08,
  author       = {Meng Cui and
                  Mihaly Mezei and
                  Roman Osman},
  title        = {Modeling dimerizations of transmembrane proteins using Brownian dynamics
                  simulations},
  journal      = {J. Comput. Aided Mol. Des.},
  volume       = {22},
  number       = {8},
  pages        = {553--561},
  year         = {2008},
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  doi          = {10.1007/S10822-008-9198-3},
  timestamp    = {Thu, 16 Apr 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/jcamd/CuiMO08.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcisd/CasciariDF08,
  author       = {Daniele Casciari and
                  Daniele Dell'Orco and
                  Francesca Fanelli},
  title        = {Homodimerization of Neurotensin 1 Receptor Involves Helices 1, 2,
                  and 4: Insights from Quaternary Structure Predictions and Dimerization
                  Free Energy Estimations},
  journal      = {J. Chem. Inf. Model.},
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  number       = {8},
  pages        = {1669--1678},
  year         = {2008},
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  doi          = {10.1021/CI800048D},
  timestamp    = {Fri, 06 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/jcisd/CasciariDF08.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-0809-3481,
  author       = {Vladimir Y. Chernyak and
                  Michael Chertkov},
  title        = {Fermions and Loops on Graphs. {II.} Monomer-Dimer Model as Series
                  of Determinants},
  journal      = {CoRR},
  volume       = {abs/0809.3481},
  year         = {2008},
  url          = {http://arxiv.org/abs/0809.3481},
  eprinttype    = {arXiv},
  eprint       = {0809.3481},
  timestamp    = {Mon, 13 Aug 2018 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/corr/abs-0809-3481.bib},
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}
@article{DBLP:journals/bmcbi/SureshV06,
  author       = {Anita Suresh and
                  Chandra Verma},
  title        = {Modelling study of dimerization in mammalian defensins},
  journal      = {{BMC} Bioinform.},
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  number       = {{S-5}},
  year         = {2006},
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  timestamp    = {Thu, 14 Oct 2021 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bmcbi/SureshV06.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcamd/FilizolaWW06,
  author       = {Marta Filizola and
                  Simon X. Wang and
                  Harel Weinstein},
  title        = {Dynamic models of G-protein coupled receptor dimers: indications of
                  asymmetry in the rhodopsin dimer from molecular dynamics simulations
                  in a {POPC} bilayer},
  journal      = {J. Comput. Aided Mol. Des.},
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  year         = {2006},
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  doi          = {10.1007/S10822-006-9053-3},
  timestamp    = {Thu, 16 Apr 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/jcamd/FilizolaWW06.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcisd/RemkoL06a,
  author       = {Milan Remko and
                  Claus{-}Wilhelm von der Lieth},
  title        = {Gas-Phase and Solution Conformations of Selected Dimeric Structural
                  Units of Heparin},
  journal      = {J. Chem. Inf. Model.},
  volume       = {46},
  number       = {4},
  pages        = {1687--1694},
  year         = {2006},
  url          = {https://doi.org/10.1021/ci060060\%2B},
  doi          = {10.1021/CI060060\%2B},
  timestamp    = {Fri, 06 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/jcisd/RemkoL06a.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/GrynbergJG03,
  author       = {Marcin Grynberg and
                  Lukasz Jaroszewski and
                  Adam Godzik},
  title        = {Domain analysis of the tubulin cofactor system: a model for tubulin
                  folding and dimerization},
  journal      = {{BMC} Bioinform.},
  volume       = {4},
  pages        = {46},
  year         = {2003},
  url          = {https://doi.org/10.1186/1471-2105-4-46},
  doi          = {10.1186/1471-2105-4-46},
  timestamp    = {Sun, 15 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bmcbi/GrynbergJG03.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcc/Krol03,
  author       = {Marcin Kr{\'{o}}l},
  title        = {Comparison of various implicit solvent models in molecular dynamics
                  simulations of immunoglobulin {G} light chain dimer},
  journal      = {J. Comput. Chem.},
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  number       = {5},
  pages        = {531--546},
  year         = {2003},
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  doi          = {10.1002/JCC.10186},
  timestamp    = {Wed, 01 Apr 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/jcc/Krol03.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
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@article{DBLP:journals/jcc/OtsukaKEKC02,
  author       = {Takao Otsuka and
                  Seiji Koizumi and
                  Kazunaka Endo and
                  Hiroyuki Kawabe and
                  Delano P. Chong},
  title        = {Theoretical auger electron spectra of polymers by density functional
                  theory calculations using model dimers},
  journal      = {J. Comput. Chem.},
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  number       = {3},
  pages        = {394--401},
  year         = {2002},
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  doi          = {10.1002/JCC.10008},
  timestamp    = {Sat, 30 May 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/jcc/OtsukaKEKC02.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
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@article{DBLP:journals/jcc/MannforsMPK01,
  author       = {Berit Mannfors and
                  Noemi G. Mirkin and
                  Kim Palm{\"{o}} and
                  Samuel Krimm},
  title        = {A polarizable electrostatic model of the N-methylacetamide dimer},
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  pages        = {1933--1943},
  year         = {2001},
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  timestamp    = {Wed, 01 Apr 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/jcc/MannforsMPK01.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
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@article{DBLP:journals/cgf/SavranskyDG99,
  author       = {Guillermo Savransky and
                  Dan Dimerman and
                  Craig Gotsman},
  title        = {Modeling and Rendering Escher-Like Impossible Scenes},
  journal      = {Comput. Graph. Forum},
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  number       = {2},
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  year         = {1999},
  url          = {https://doi.org/10.1111/1467-8659.00367},
  doi          = {10.1111/1467-8659.00367},
  timestamp    = {Mon, 26 Oct 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/cgf/SavranskyDG99.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
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@article{DBLP:journals/jcamd/HilgerothFWH99,
  author       = {Andreas Hilgeroth and
                  Romy Fleischer and
                  Michael Wiese and
                  Frank W. Heinemann},
  title        = {Comparison of azacyclic urea {A-98881} as {HIV-1} protease inhibitor
                  with cage dimeric N-benzyl 4-(4-methoxyphenyl)-1, 4- dihydropyridine
                  as representative of a novel class of {HIV-1} protease inhibitors:
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