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@article{DBLP:journals/bmcsb/AdapaTWTJJ19,
author = {Swamy Rakesh Adapa and
Rachel A. Taylor and
Chengqi Wang and
Richard Thomson{-}Luque and
Leah R. Johnson and
Rays H. Y. Jiang},
title = {Plasmodium vivax readiness to transmit: implication for malaria eradication},
journal = {{BMC} Syst. Biol.},
volume = {13},
number = {1},
pages = {5:1--5:12},
year = {2019},
url = {https://doi.org/10.1186/s12918-018-0669-4},
doi = {10.1186/S12918-018-0669-4},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcsb/AdapaTWTJJ19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/Anda-JaureguiGM19,
author = {Guillermo de Anda{-}J{\'{a}}uregui and
Kai Guo and
Brett A. McGregor and
Eva L. Feldman and
Junguk Hur},
title = {Pathway crosstalk perturbation network modeling for identification
of connectivity changes induced by diabetic neuropathy and pioglitazone},
journal = {{BMC} Syst. Biol.},
volume = {13},
number = {1},
pages = {1:1--1:11},
year = {2019},
url = {https://doi.org/10.1186/s12918-018-0674-7},
doi = {10.1186/S12918-018-0674-7},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/Anda-JaureguiGM19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/Anda-JaureguiGM19a,
author = {Guillermo de Anda{-}J{\'{a}}uregui and
Kai Guo and
Brett A. McGregor and
Eva L. Feldman and
Junguk Hur},
title = {Correction to: Pathway crosstalk perturbation network modeling for
identification of connectivity changes induced by diabetic neuropathy
and pioglitazone},
journal = {{BMC} Syst. Biol.},
volume = {13},
number = {1},
pages = {31:1},
year = {2019},
url = {https://doi.org/10.1186/s12918-019-0707-x},
doi = {10.1186/S12918-019-0707-X},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/Anda-JaureguiGM19a.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/BanckG19,
author = {Jan Christoph Banck and
Dennis G{\"{o}}rlich},
title = {In-silico comparison of two induction regimens {(7} + 3 vs 7 + 3 plus
additional bone marrow evaluation) in acute myeloid leukemia treatment},
journal = {{BMC} Syst. Biol.},
volume = {13},
number = {1},
pages = {18:1--18:14},
year = {2019},
url = {https://doi.org/10.1186/s12918-019-0684-0},
doi = {10.1186/S12918-019-0684-0},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/BanckG19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/ContadorRAA19,
author = {Carolina A. Contador and
Vida Rodr{\'{\i}}guez and
Barbara A. Andrews and
Juan A. Asenjo},
title = {Use of genome-scale models to get new insights into the marine actinomycete
genus Salinispora},
journal = {{BMC} Syst. Biol.},
volume = {13},
number = {1},
pages = {11:1--11:14},
year = {2019},
url = {https://doi.org/10.1186/s12918-019-0683-1},
doi = {10.1186/S12918-019-0683-1},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/ContadorRAA19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/DuttaMASZ19,
author = {Pritha Dutta and
Lichun Ma and
Yusuf Ali and
Peter M. A. Sloot and
Jie Zheng},
title = {Boolean network modeling of {\(\beta\)}-cell apoptosis and insulin
resistance in type 2 diabetes mellitus},
journal = {{BMC} Syst. Biol.},
volume = {13-S},
number = {2},
pages = {36:1--36:12},
year = {2019},
url = {https://doi.org/10.1186/s12918-019-0692-0},
doi = {10.1186/S12918-019-0692-0},
timestamp = {Thu, 02 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcsb/DuttaMASZ19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/GeraldDBS19,
author = {Nishant Gerald and
Dibyendu Dutta and
R. G. Brajesh and
Supreet Saini},
title = {Mathematical modeling of movement on fitness landscapes},
journal = {{BMC} Syst. Biol.},
volume = {13},
number = {1},
pages = {25:1--25:10},
year = {2019},
url = {https://doi.org/10.1186/s12918-019-0704-0},
doi = {10.1186/S12918-019-0704-0},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/GeraldDBS19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/GoTIBD19,
author = {Natacha Go and
Suzanne Touzeau and
Zeenath Islam and
Catherine Belloc and
Andrea Doeschl{-}Wilson},
title = {How to prevent viremia rebound? Evidence from a PRRSv data-supported
model of immune response},
journal = {{BMC} Syst. Biol.},
volume = {13},
number = {1},
pages = {15:1--15:21},
year = {2019},
url = {https://doi.org/10.1186/s12918-018-0666-7},
doi = {10.1186/S12918-018-0666-7},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcsb/GoTIBD19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/HaPP19,
author = {Jihwan Ha and
Chihyun Park and
Sanghyun Park},
title = {{PMAMCA:} prediction of microRNA-disease association utilizing a matrix
completion approach},
journal = {{BMC} Syst. Biol.},
volume = {13},
number = {1},
pages = {33:1--33:13},
year = {2019},
url = {https://doi.org/10.1186/s12918-019-0700-4},
doi = {10.1186/S12918-019-0700-4},
timestamp = {Wed, 01 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcsb/HaPP19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/HaoDKBHTKFWSHK19,
author = {Yangyang Hao and
Quan{-}Yang Duh and
Richard T. Kloos and
Joshua Babiarz and
R. Mack Harrell and
S. Thomas Traweek and
Su Yeon Kim and
Grazyna Fedorowicz and
P. Sean Walsh and
Peter M. Sadow and
Jing Huang and
Giulia C. Kennedy},
title = {Identification of H{\"{u}}rthle cell cancers: solving a clinical
challenge with genomic sequencing and a trio of machine learning algorithms},
journal = {{BMC} Syst. Biol.},
volume = {13-S},
number = {2},
pages = {27:1--27:14},
year = {2019},
url = {https://doi.org/10.1186/s12918-019-0693-z},
doi = {10.1186/S12918-019-0693-Z},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/HaoDKBHTKFWSHK19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/JansenPHW19,
author = {Martin Jansen and
Gerhard Puetz and
Michael M. Hoffmann and
Karl Winkler},
title = {A mathematical model to estimate cholesterylester transfer protein
{(CETP)} triglycerides flux in human plasma},
journal = {{BMC} Syst. Biol.},
volume = {13},
number = {1},
pages = {12:1--12:12},
year = {2019},
url = {https://doi.org/10.1186/s12918-019-0679-x},
doi = {10.1186/S12918-019-0679-X},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/JansenPHW19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/KCLCYH19,
author = {Kishan KC and
Rui Li and
Feng Cui and
Qi Yu and
Anne R. Haake},
title = {{GNE:} a deep learning framework for gene network inference by aggregating
biological information},
journal = {{BMC} Syst. Biol.},
volume = {13-S},
number = {2},
pages = {38:1--38:14},
year = {2019},
url = {https://doi.org/10.1186/s12918-019-0694-y},
doi = {10.1186/S12918-019-0694-Y},
timestamp = {Mon, 26 Jun 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/KCLCYH19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/KrishnanF19,
author = {Jawahar Krishnan and
Ioannis Floros},
title = {Adaptive information processing of network modules to dynamic and
spatial stimuli},
journal = {{BMC} Syst. Biol.},
volume = {13},
number = {1},
pages = {32:1--32:26},
year = {2019},
url = {https://doi.org/10.1186/s12918-019-0703-1},
doi = {10.1186/S12918-019-0703-1},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/KrishnanF19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/LaiF19,
author = {Xiulan Lai and
Avner Friedman},
title = {How to schedule {VEGF} and {PD-1} inhibitors in combination cancer
therapy?},
journal = {{BMC} Syst. Biol.},
volume = {13},
number = {1},
pages = {30:1--30:18},
year = {2019},
url = {https://doi.org/10.1186/s12918-019-0706-y},
doi = {10.1186/S12918-019-0706-Y},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/LaiF19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/LiLGY19,
author = {Xiaoying Li and
Yaping Lin and
Changlong Gu and
Jialiang Yang},
title = {{FCMDAP:} using miRNA family and cluster information to improve the
prediction accuracy of disease related miRNAs},
journal = {{BMC} Syst. Biol.},
volume = {13-S},
number = {2},
pages = {26:1--26:16},
year = {2019},
url = {https://doi.org/10.1186/s12918-019-0696-9},
doi = {10.1186/S12918-019-0696-9},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/LiLGY19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/LiuBAZFCZ19,
author = {Guan{-}Sheng Liu and
Richard Ballweg and
Alan Ashbaugh and
Yin Zhang and
Joseph Facciolo and
Melanie T. Cushion and
Tongli Zhang},
title = {Correction to: {A} quantitative systems pharmacology {(QSP)} model
for Pneumocystis treatment in mice},
journal = {{BMC} Syst. Biol.},
volume = {13},
number = {1},
pages = {40:1--40:7},
year = {2019},
url = {https://doi.org/10.1186/s12918-019-0708-9},
doi = {10.1186/S12918-019-0708-9},
timestamp = {Fri, 09 Apr 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/LiuBAZFCZ19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/LiuCGYZGW19,
author = {Xiaoting Liu and
Jinhu Chen and
Tianyuan Guan and
Hui Yao and
Wenpei Zhang and
Zhenlong Guan and
Yanqin Wang},
title = {miRNAs and target genes in the blood as biomarkers for the early diagnosis
of Parkinson's disease},
journal = {{BMC} Syst. Biol.},
volume = {13},
number = {1},
pages = {10:1--10:8},
year = {2019},
url = {https://doi.org/10.1186/s12918-019-0680-4},
doi = {10.1186/S12918-019-0680-4},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/LiuCGYZGW19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/LiuCGYZGW19a,
author = {Xiaoting Liu and
Jinhu Chen and
Tianyuan Guan and
Hui Yao and
Wenpei Zhang and
Zhenlong Guan and
Yanqin Wang},
title = {Correction to: miRNAs and target genes in the blood as biomarkers
for the early diagnosis of Parkinson's disease},
journal = {{BMC} Syst. Biol.},
volume = {13},
number = {1},
pages = {20:1--20:2},
year = {2019},
url = {https://doi.org/10.1186/s12918-019-0701-3},
doi = {10.1186/S12918-019-0701-3},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/LiuCGYZGW19a.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/LiuLZCZDCLZR19,
author = {Lunfei Liu and
Wenting Liu and
Yuxin Zheng and
Jisu Chen and
Jiong Zhou and
Huatuo Dai and
Suiqing Cai and
Jianjun Liu and
Min Zheng and
Yunqing Ren},
title = {Anti-TNF- {\(\alpha\)}treatment-related pathways and biomarkers revealed
by transcriptome analysis in Chinese psoriasis patients},
journal = {{BMC} Syst. Biol.},
volume = {13-S},
number = {2},
pages = {29:1--29:9},
year = {2019},
url = {https://doi.org/10.1186/s12918-019-0698-7},
doi = {10.1186/S12918-019-0698-7},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcsb/LiuLZCZDCLZR19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/LiuR19,
author = {Wenting Liu and
Jagath C. Rajapakse},
title = {Fusing gene expressions and transitive protein-protein interactions
for inference of gene regulatory networks},
journal = {{BMC} Syst. Biol.},
volume = {13-S},
number = {2},
pages = {37:1--37:13},
year = {2019},
url = {https://doi.org/10.1186/s12918-019-0695-x},
doi = {10.1186/S12918-019-0695-X},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/LiuR19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/MoskalevPZS19,
author = {Alexey Moskalev and
Ekaterina Proshkina and
Alex Zhavoronkov and
Mikhail Shaposhnikov},
title = {Effects of unpaired 1 gene overexpression on the lifespan of Drosophila
melanogaster},
journal = {{BMC} Syst. Biol.},
volume = {13-S},
number = {1},
pages = {13--22},
year = {2019},
url = {https://doi.org/10.1186/s12918-019-0687-x},
doi = {10.1186/S12918-019-0687-X},
timestamp = {Wed, 07 Dec 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcsb/MoskalevPZS19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/OrlovHB19,
author = {Yuriy L. Orlov and
Ralf Hofest{\"{a}}dt and
Ancha V. Baranova},
title = {Systems biology research at {BGRS-2018}},
journal = {{BMC} Syst. Biol.},
volume = {13-S},
number = {1},
pages = {21:1--21:2},
year = {2019},
url = {https://doi.org/10.1186/s12918-019-0685-z},
doi = {10.1186/S12918-019-0685-Z},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/OrlovHB19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/PastushkovaRGBK19,
author = {Lyudmila Kh. Pastushkova and
Vasily B. Rusanov and
Anna G. Goncharova and
Alexander G. Brzhozovskiy and
Alexey S. Kononikhin and
Anna G. Chernikova and
Daria N. Kashirina and
Andrey M. Nosovsky and
Roman M. Baevsky and
Evgeny N. Nikolaev and
Irina M. Larina},
title = {Urine proteome changes associated with autonomic regulation of heart
rate in cosmonauts},
journal = {{BMC} Syst. Biol.},
volume = {13-S},
number = {1},
pages = {23--31},
year = {2019},
url = {https://doi.org/10.1186/s12918-019-0688-9},
doi = {10.1186/S12918-019-0688-9},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/PastushkovaRGBK19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/ReynoldsHSP19,
author = {Elaine R. Reynolds and
Ryan Himmelwright and
Christopher Sanginiti and
Jeffrey O. Pfaffmann},
title = {An agent-based model of the Notch signaling pathway elucidates three
levels of complexity in the determination of developmental patterning},
journal = {{BMC} Syst. Biol.},
volume = {13},
number = {1},
pages = {7:1--7:16},
year = {2019},
url = {https://doi.org/10.1186/s12918-018-0672-9},
doi = {10.1186/S12918-018-0672-9},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/ReynoldsHSP19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/RozendaalWHR19,
author = {Yvonne J. W. Rozendaal and
Yanan Wang and
Peter A. J. Hilbers and
Natal A. W. van Riel},
title = {Computational modelling of energy balance in individuals with Metabolic
Syndrome},
journal = {{BMC} Syst. Biol.},
volume = {13},
number = {1},
pages = {24:1--24:14},
year = {2019},
url = {https://doi.org/10.1186/s12918-019-0705-z},
doi = {10.1186/S12918-019-0705-Z},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/RozendaalWHR19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/SakharovMKNPSBT19,
author = {Dmitry Sakharov and
Diana V. Maltseva and
Evgeny Knyazev and
Sergey Nikulin and
Andrey Poloznikov and
Sergey Shilin and
Ancha V. Baranova and
Irina Tsypina and
Alexander G. Tonevitsky},
title = {Towards embedding Caco-2 model of gut interface in a microfluidic
device to enable multi-organ models for systems biology},
journal = {{BMC} Syst. Biol.},
volume = {13-S},
number = {1},
pages = {3--11},
year = {2019},
url = {https://doi.org/10.1186/s12918-019-0686-y},
doi = {10.1186/S12918-019-0686-Y},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/SakharovMKNPSBT19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/SanchezLKN19,
author = {Benjam{\'{\i}}n J. S{\'{a}}nchez and
Feiran Li and
Eduard J. Kerkhoven and
Jens Nielsen},
title = {SLIMEr: probing flexibility of lipid metabolism in yeast with an improved
constraint-based modeling framework},
journal = {{BMC} Syst. Biol.},
volume = {13},
number = {1},
pages = {4:1--4:9},
year = {2019},
url = {https://doi.org/10.1186/s12918-018-0673-8},
doi = {10.1186/S12918-018-0673-8},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcsb/SanchezLKN19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/SunCLS19,
author = {Shiquan Sun and
Yabo Chen and
Yang Liu and
Xuequn Shang},
title = {A fast and efficient count-based matrix factorization method for detecting
cell types from single-cell RNAseq data},
journal = {{BMC} Syst. Biol.},
volume = {13-S},
number = {2},
pages = {28:1--28:8},
year = {2019},
url = {https://doi.org/10.1186/s12918-019-0699-6},
doi = {10.1186/S12918-019-0699-6},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/SunCLS19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/TabeiKSY19,
author = {Yasuo Tabei and
Masaaki Kotera and
Ryusuke Sawada and
Yoshihiro Yamanishi},
title = {Network-based characterization of drug-protein interaction signatures
with a space-efficient approach},
journal = {{BMC} Syst. Biol.},
volume = {13-S},
number = {2},
pages = {39:1--39:15},
year = {2019},
url = {https://doi.org/10.1186/s12918-019-0691-1},
doi = {10.1186/S12918-019-0691-1},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/TabeiKSY19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/VermaSV19,
author = {Babita K. Verma and
Pushpavanam Subramaniam and
Rajanikanth Vadigepalli},
title = {Model-based virtual patient analysis of human liver regeneration predicts
critical perioperative factors controlling the dynamic mode of response
to resection},
journal = {{BMC} Syst. Biol.},
volume = {13},
number = {1},
pages = {9:1--9:15},
year = {2019},
url = {https://doi.org/10.1186/s12918-019-0678-y},
doi = {10.1186/S12918-019-0678-Y},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/VermaSV19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/WoffordL19,
author = {Joshua D. Wofford and
Paul A. Lindahl},
title = {A mathematical model of iron import and trafficking in wild-type and
Mrs3/4{\(\Delta\)}{\(\Delta\)} yeast cells},
journal = {{BMC} Syst. Biol.},
volume = {13},
number = {1},
pages = {23:1--23:16},
year = {2019},
url = {https://doi.org/10.1186/s12918-019-0702-2},
doi = {10.1186/S12918-019-0702-2},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/WoffordL19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/WuWO19,
author = {Lili Wu and
Hongli Wang and
Qi Ouyang},
title = {Constructing network topologies for multiple signal-encoding functions},
journal = {{BMC} Syst. Biol.},
volume = {13},
number = {1},
pages = {6:1--6:13},
year = {2019},
url = {https://doi.org/10.1186/s12918-018-0676-5},
doi = {10.1186/S12918-018-0676-5},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/WuWO19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/XuePS19,
author = {Hansheng Xue and
Jiajie Peng and
Xuequn Shang},
title = {Predicting disease-related phenotypes using an integrated phenotype
similarity measurement based on {HPO}},
journal = {{BMC} Syst. Biol.},
volume = {13-S},
number = {2},
pages = {34:1--34:12},
year = {2019},
url = {https://doi.org/10.1186/s12918-019-0697-8},
doi = {10.1186/S12918-019-0697-8},
timestamp = {Sun, 12 Nov 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcsb/XuePS19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/YangELSP19,
author = {Laurence Yang and
Ali Ebrahim and
Colton J. Lloyd and
Michael A. Saunders and
Bernhard O. Palsson},
title = {DynamicME: dynamic simulation and refinement of integrated models
of metabolism and protein expression},
journal = {{BMC} Syst. Biol.},
volume = {13},
number = {1},
pages = {2:1--2:15},
year = {2019},
url = {https://doi.org/10.1186/s12918-018-0675-6},
doi = {10.1186/S12918-018-0675-6},
timestamp = {Fri, 05 May 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/YangELSP19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/YangWYZCG19,
author = {Mary Qu Yang and
Sherman Morton Weissman and
William Yang and
Jialing Zhang and
Allon Canaan and
Renchu Guan},
title = {Correction to: {MISC:} missing imputation for single-cell {RNA} sequencing
data},
journal = {{BMC} Syst. Biol.},
volume = {13},
number = {1},
pages = {13:1},
year = {2019},
url = {https://doi.org/10.1186/s12918-019-0681-3},
doi = {10.1186/S12918-019-0681-3},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/YangWYZCG19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/YangWZXZSH19,
author = {Qichang Yang and
Jing Wu and
Jian Zhao and
Tianyi Xu and
Zhongming Zhao and
Xiaofeng Song and
Ping Han},
title = {Correction to: circular {RNA} expression profiles during the differentiation
of mouse neural stem cells},
journal = {{BMC} Syst. Biol.},
volume = {13},
number = {1},
pages = {14:1},
year = {2019},
url = {https://doi.org/10.1186/s12918-019-0682-2},
doi = {10.1186/S12918-019-0682-2},
timestamp = {Wed, 03 May 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/YangWZXZSH19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/YeH19,
author = {Xiaoxin Ye and
Joshua Wing Kei Ho},
title = {Ultrafast clustering of single-cell flow cytometry data using FlowGrid},
journal = {{BMC} Syst. Biol.},
volume = {13-S},
number = {2},
pages = {35:1--35:8},
year = {2019},
url = {https://doi.org/10.1186/s12918-019-0690-2},
doi = {10.1186/S12918-019-0690-2},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/YeH19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/ZengY19,
author = {Hong Zeng and
Aidong Yang},
title = {Modelling overflow metabolism in Escherichia coli with flux balance
analysis incorporating differential proteomic efficiencies of energy
pathways},
journal = {{BMC} Syst. Biol.},
volume = {13},
number = {1},
pages = {3:1--3:18},
year = {2019},
url = {https://doi.org/10.1186/s12918-018-0677-4},
doi = {10.1186/S12918-018-0677-4},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/ZengY19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/ZhaoJSARY19,
author = {Yuqi Zhao and
Deepali Jhamb and
Le Shu and
Douglas Arneson and
Deepak K. Rajpal and
Xia Yang},
title = {Multi-omics integration reveals molecular networks and regulators
of psoriasis},
journal = {{BMC} Syst. Biol.},
volume = {13},
number = {1},
pages = {8:1--8:14},
year = {2019},
url = {https://doi.org/10.1186/s12918-018-0671-x},
doi = {10.1186/S12918-018-0671-X},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcsb/ZhaoJSARY19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/ZubairovaVOED19,
author = {Ulyana S. Zubairova and
Pavel Yu. Verman and
Polina A. Oshchepkova and
Alina S. Elsukova and
Alexey V. Doroshkov},
title = {{LSM-W2:} laser scanning microscopy worker for wheat leaf surface
morphology},
journal = {{BMC} Syst. Biol.},
volume = {13-S},
number = {1},
pages = {33--44},
year = {2019},
url = {https://doi.org/10.1186/s12918-019-0689-8},
doi = {10.1186/S12918-019-0689-8},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/ZubairovaVOED19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/AnandSC18,
author = {Rajat Anand and
Dipanka Sarmah and
Samrat Chatterjee},
title = {Extracting proteins involved in disease progression using temporally
connected networks},
journal = {{BMC} Syst. Biol.},
volume = {12},
number = {1},
pages = {78:1--78:13},
year = {2018},
url = {https://doi.org/10.1186/s12918-018-0600-z},
doi = {10.1186/S12918-018-0600-Z},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/AnandSC18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/AshtianiSRHWMJ18,
author = {Minoo Ashtiani and
Ali Salehzadeh{-}Yazdi and
Zahra Razaghi{-}Moghadam and
Holger Hennig and
Olaf Wolkenhauer and
Mehdi Mirzaie and
Mohieddin Jafari},
title = {A systematic survey of centrality measures for protein-protein interaction
networks},
journal = {{BMC} Syst. Biol.},
volume = {12},
number = {1},
pages = {80:1--80:17},
year = {2018},
url = {https://doi.org/10.1186/s12918-018-0598-2},
doi = {10.1186/S12918-018-0598-2},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/AshtianiSRHWMJ18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/BelorkarVW18,
author = {Abha Belorkar and
Rajanikanth Vadigepalli and
Limsoon Wong},
title = {SPSNet: subpopulation-sensitive network-based analysis of heterogeneous
gene expression data},
journal = {{BMC} Syst. Biol.},
volume = {12},
number = {{S-2}},
pages = {93--108},
year = {2018},
url = {https://doi.org/10.1186/s12918-018-0538-1},
doi = {10.1186/S12918-018-0538-1},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/BelorkarVW18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/BuigaETS18,
author = {Petronela Buiga and
Ari Elson and
Lydia Tabernero and
Jean{-}Marc Schwartz},
title = {Regulation of dual specificity phosphatases in breast cancer during
initial treatment with Herceptin: a Boolean model analysis},
journal = {{BMC} Syst. Biol.},
volume = {12},
number = {1},
pages = {13--24},
year = {2018},
url = {https://doi.org/10.1186/s12918-018-0534-5},
doi = {10.1186/S12918-018-0534-5},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/BuigaETS18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/CaoWLZQ18,
author = {Yan{-}feng Cao and
Shi{-}feng Wang and
Xi Li and
Yan{-}ling Zhang and
Yanjiang Qiao},
title = {The anticancer mechanism investigation of Tanshinone {IIA} by pharmacological
clustering in protein network},
journal = {{BMC} Syst. Biol.},
volume = {12},
number = {1},
pages = {90:1--90:12},
year = {2018},
url = {https://doi.org/10.1186/s12918-018-0606-6},
doi = {10.1186/S12918-018-0606-6},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/CaoWLZQ18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/CasagrandaTRG18,
author = {Stefano Casagranda and
Suzanne Touzeau and
Delphine Ropers and
Jean{-}Luc Gouz{\'{e}}},
title = {Principal process analysis of biological models},
journal = {{BMC} Syst. Biol.},
volume = {12},
number = {1},
pages = {68:1--68:26},
year = {2018},
url = {https://doi.org/10.1186/s12918-018-0586-6},
doi = {10.1186/S12918-018-0586-6},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/CasagrandaTRG18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/ChooBJC18,
author = {Sang{-}Mok Choo and
Byunghyun Ban and
Jae Il Joo and
Kwang{-}Hyun Cho},
title = {The phenotype control kernel of a biomolecular regulatory network},
journal = {{BMC} Syst. Biol.},
volume = {12},
number = {1},
pages = {49:1--49:15},
year = {2018},
url = {https://doi.org/10.1186/s12918-018-0576-8},
doi = {10.1186/S12918-018-0576-8},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/ChooBJC18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/CogillSYW18,
author = {Steven B. Cogill and
Anand K. Srivastava and
Mary Qu Yang and
Liangjiang Wang},
title = {Co-expression of long non-coding RNAs and autism risk genes in the
developing human brain},
journal = {{BMC} Syst. Biol.},
volume = {12},
number = {7},
pages = {65--73},
year = {2018},
url = {https://doi.org/10.1186/s12918-018-0639-x},
doi = {10.1186/S12918-018-0639-X},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/CogillSYW18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/ConradKHKMVGJBV18,
author = {Theresia Conrad and
Olaf Kniemeyer and
Sebastian Henkel and
Thomas Kr{\"{u}}ger and
D. J. Mattern and
Vito Valiante and
Reinhard Guthke and
I. D. Jacobsen and
Axel A. Brakhage and
Sebastian Vlaic and
J{\"{o}}rg Linde},
title = {Module-detection approaches for the integration of multilevel omics
data highlight the comprehensive response of Aspergillus fumigatus
to caspofungin},
journal = {{BMC} Syst. Biol.},
volume = {12},
number = {1},
pages = {88:1--88:18},
year = {2018},
url = {https://doi.org/10.1186/s12918-018-0620-8},
doi = {10.1186/S12918-018-0620-8},
timestamp = {Thu, 24 Nov 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcsb/ConradKHKMVGJBV18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/CookAHOV18,
author = {Daniel Cook and
Sirisha Achanta and
Jan B. Hoek and
Babatunde A. Ogunnaike and
Rajanikanth Vadigepalli},
title = {Cellular network modeling and single cell gene expression analysis
reveals novel hepatic stellate cell phenotypes controlling liver regeneration
dynamics},
journal = {{BMC} Syst. Biol.},
volume = {12},
number = {1},
pages = {86:1--86:29},
year = {2018},
url = {https://doi.org/10.1186/s12918-018-0605-7},
doi = {10.1186/S12918-018-0605-7},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/CookAHOV18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/CuiY18,
author = {Fangshu Cui and
Bo Yuan},
title = {Fixation probability of a beneficial mutation conferring decreased
generation time in changing environments},
journal = {{BMC} Syst. Biol.},
volume = {12},
number = {4},
pages = {157--166},
year = {2018},
url = {https://doi.org/10.1186/s12918-018-0575-9},
doi = {10.1186/S12918-018-0575-9},
timestamp = {Sat, 06 Aug 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/CuiY18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/DaiLLLL18,
author = {Wentao Dai and
Quanxue Li and
Bing{-}Ya Liu and
Yi{-}Xue Li and
Yuan{-}Yuan Li},
title = {Differential networking meta-analysis of gastric cancer across Asian
and American racial groups},
journal = {{BMC} Syst. Biol.},
volume = {12},
number = {4},
pages = {17--28},
year = {2018},
url = {https://doi.org/10.1186/s12918-018-0564-z},
doi = {10.1186/S12918-018-0564-Z},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/DaiLLLL18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/DimitrovaCLS18,
author = {Elena S. Dimitrova and
Leslie A. Caromile and
Reinhard C. Laubenbacher and
Linda H. Shapiro},
title = {The innate immune response to ischemic injury: a multiscale modeling
perspective},
journal = {{BMC} Syst. Biol.},
volume = {12},
number = {1},
pages = {50:1--50:13},
year = {2018},
url = {https://doi.org/10.1186/s12918-018-0580-z},
doi = {10.1186/S12918-018-0580-Z},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/DimitrovaCLS18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/FangMMDSKSSP18,
author = {Xin Fang and
Jonathan M. Monk and
Nathan Mih and
Bin Du and
Anand Sastry and
Erol S. Kavvas and
Yara Seif and
Larry Smarr and
Bernhard O. Palsson},
title = {Escherichia coli {B2} strains prevalent in inflammatory bowel disease
patients have distinct metabolic capabilities that enable colonization
of intestinal mucosa},
journal = {{BMC} Syst. Biol.},
volume = {12},
number = {1},
pages = {66:1--66:10},
year = {2018},
url = {https://doi.org/10.1186/s12918-018-0587-5},
doi = {10.1186/S12918-018-0587-5},
timestamp = {Thu, 29 Apr 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/FangMMDSKSSP18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/Folch-FortunyTH18,
author = {Abel Folch{-}Fortuny and
Bas Teusink and
Huub C. J. Hoefsloot and
Age K. Smilde and
Alberto Ferrer},
title = {Dynamic elementary mode modelling of non-steady state flux data},
journal = {{BMC} Syst. Biol.},
volume = {12},
number = {1},
pages = {71:1--71:15},
year = {2018},
url = {https://doi.org/10.1186/s12918-018-0589-3},
doi = {10.1186/S12918-018-0589-3},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/Folch-FortunyTH18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/FroysaFB18,
author = {H{\aa}vard G. Fr{\o}ysa and
Shirin Fallahi and
Nello Blaser},
title = {Evaluating model reduction under parameter uncertainty},
journal = {{BMC} Syst. Biol.},
volume = {12},
number = {1},
pages = {79:1--79:10},
year = {2018},
url = {https://doi.org/10.1186/s12918-018-0602-x},
doi = {10.1186/S12918-018-0602-X},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/FroysaFB18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/FuWHLJOZG18,
author = {Min Fu and
Wenming Wu and
Xiafei Hong and
Qiuhua Liu and
Jialin Jiang and
Yaobin Ou and
Yupei Zhao and
Xinqi Gong},
title = {Hierarchical combinatorial deep learning architecture for pancreas
segmentation of medical computed tomography cancer images},
journal = {{BMC} Syst. Biol.},
volume = {12},
number = {4},
pages = {119--127},
year = {2018},
url = {https://doi.org/10.1186/s12918-018-0572-z},
doi = {10.1186/S12918-018-0572-Z},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/FuWHLJOZG18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/GongDMWHWBGG18,
author = {Ping Gong and
Keri B. Donohue and
Anne M. Mayo and
Yuping Wang and
Huixiao Hong and
Mitchell S. Wilbanks and
Natalie D. Barker and
Xin Guan and
Kurt A. Gust},
title = {Comparative toxicogenomics of three insensitive munitions constituents
2, 4-dinitroanisole, nitroguanidine and nitrotriazolone in the soil
nematode Caenorhabditis elegans},
journal = {{BMC} Syst. Biol.},
volume = {12},
number = {7},
pages = {31--46},
year = {2018},
url = {https://doi.org/10.1186/s12918-018-0636-0},
doi = {10.1186/S12918-018-0636-0},
timestamp = {Mon, 03 Jan 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcsb/GongDMWHWBGG18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/Gonzalez-Menendez18,
author = {V{\'{\i}}ctor Gonz{\'{a}}lez{-}Men{\'{e}}ndez and
Germ{\'{a}}n Mart{\'{\i}}nez and
Rachel Serrano and
Francisca Mu{\~{n}}oz and
Jes{\'{u}}s Mart{\'{\i}}n and
Olga Genilloud and
Jos{\'{e}} R. Tormo},
title = {Ultraviolet {(IUV)} and mass spectrometry {(IMS)} imaging for the
deconvolution of microbial interactions},
journal = {{BMC} Syst. Biol.},
volume = {12},
number = {5},
pages = {91--97},
year = {2018},
url = {https://doi.org/10.1186/s12918-018-0617-3},
doi = {10.1186/S12918-018-0617-3},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/Gonzalez-Menendez18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/GuoLHWYYFJD18,
author = {Mengjie Guo and
Sicheng Lu and
Hongming Huang and
Yaohui Wang and
Mary Qu Yang and
Ye Yang and
Zhimin Fan and
Bin Jiang and
Youping Deng},
title = {Increased {AURKA} promotes cell proliferation and predicts poor prognosis
in bladder cancer},
journal = {{BMC} Syst. Biol.},
volume = {12},
number = {7},
pages = {11--17},
year = {2018},
url = {https://doi.org/10.1186/s12918-018-0634-2},
doi = {10.1186/S12918-018-0634-2},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/GuoLHWYYFJD18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/GuyeuxAACS18,
author = {Christophe Guyeux and
Bashar Al{-}Nuaimi and
Bassam AlKindy and
Jean{-}Fran{\c{c}}ois Couchot and
Michel Salomon},
title = {On the reconstruction of the ancestral bacterial genomes in genus
Mycobacterium and Brucella},
journal = {{BMC} Syst. Biol.},
volume = {12},
number = {5},
pages = {99--121},
year = {2018},
url = {https://doi.org/10.1186/s12918-018-0618-2},
doi = {10.1186/S12918-018-0618-2},
timestamp = {Sat, 05 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/GuyeuxAACS18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/GuzmanOHPCCMPF18,
author = {Gabriela I. Guzm{\'{a}}n and
Connor A. Olson and
Ying Hefner and
Patrick V. Phaneuf and
Edward Catoiu and
Lais B. Crepaldi and
Lucas Goldschmidt Micas and
Bernhard O. Palsson and
Adam M. Feist},
title = {Reframing gene essentiality in terms of adaptive flexibility},
journal = {{BMC} Syst. Biol.},
volume = {12},
number = {1},
pages = {143:1--143:20},
year = {2018},
url = {https://doi.org/10.1186/s12918-018-0653-z},
doi = {10.1186/S12918-018-0653-Z},
timestamp = {Mon, 03 Jan 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcsb/GuzmanOHPCCMPF18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/Hall-SwanCNC18a,
title = {Retraction Note: detangling {PPI} networks to uncover functionally
meaningful clusters},
journal = {{BMC} Syst. Biol.},
volume = {12},
number = {1},
pages = {113:1},
year = {2018},
url = {https://doi.org/10.1186/s12918-018-0641-3},
doi = {10.1186/S12918-018-0641-3},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/Hall-SwanCNC18a.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/HaridasBMMS18,
author = {Parvathi Haridas and
Alexander P. Browning and
Jacqui A. McGovern and
D. L. Sean McElwain and
Matthew J. Simpson},
title = {Three-dimensional experiments and individual based simulations show
that cell proliferation drives melanoma nest formation in human skin
tissue},
journal = {{BMC} Syst. Biol.},
volume = {12},
number = {1},
pages = {34:1--34:15},
year = {2018},
url = {https://doi.org/10.1186/s12918-018-0559-9},
doi = {10.1186/S12918-018-0559-9},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/HaridasBMMS18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/HeJDZ18,
author = {Wenying He and
Cangzhi Jia and
Yucong Duan and
Quan Zou},
title = {70ProPred: a predictor for discovering sigma70 promoters based on
combining multiple features},
journal = {{BMC} Syst. Biol.},
volume = {12},
number = {4},
pages = {99--107},
year = {2018},
url = {https://doi.org/10.1186/s12918-018-0570-1},
doi = {10.1186/S12918-018-0570-1},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/HeJDZ18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/HeLCYLYG18,
author = {Guannan He and
Yanchun Liang and
Yan Chen and
William Yang and
Jun S. Liu and
Mary Qu Yang and
Renchu Guan},
title = {A hotspots analysis-relation discovery representation model for revealing
diabetes mellitus and obesity},
journal = {{BMC} Syst. Biol.},
volume = {12},
number = {7},
pages = {75--85},
year = {2018},
url = {https://doi.org/10.1186/s12918-018-0640-4},
doi = {10.1186/S12918-018-0640-4},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/HeLCYLYG18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/Hernansaiz-Ballesteros18,
author = {Rosa D. Hernansaiz{-}Ballesteros and
Luca Cardelli and
Attila Csik{\'{a}}sz{-}Nagy},
title = {Single molecules can operate as primitive biological sensors, switches
and oscillators},
journal = {{BMC} Syst. Biol.},
volume = {12},
number = {1},
pages = {70:1--70:14},
year = {2018},
url = {https://doi.org/10.1186/s12918-018-0596-4},
doi = {10.1186/S12918-018-0596-4},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcsb/Hernansaiz-Ballesteros18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/HidalgoEAG18,
author = {Jos{\'{e}} F. Hidalgo and
Jose A. Egea and
Francisco De As{\'{\i}}s Guil Asensio and
Jos{\'{e}} M. Garc{\'{\i}}a},
title = {Improving the EFMs quality by augmenting their representativeness
in {LP} methods},
journal = {{BMC} Syst. Biol.},
volume = {12},
number = {5},
pages = {123--131},
year = {2018},
url = {https://doi.org/10.1186/s12918-018-0619-1},
doi = {10.1186/S12918-018-0619-1},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/HidalgoEAG18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/HongPKCMKJY18,
author = {Yourae Hong and
Choa Park and
Nayoung Kim and
Juyeon Cho and
Sung Ung Moon and
Jongmin Kim and
Euna Jeong and
Sukjoon Yoon},
title = {QSurface: fast identification of surface expression markers in cancers},
journal = {{BMC} Syst. Biol.},
volume = {12},
number = {{S-2}},
pages = {1--8},
year = {2018},
url = {https://doi.org/10.1186/s12918-018-0541-6},
doi = {10.1186/S12918-018-0541-6},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/HongPKCMKJY18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/HuGZS18,
author = {Jialu Hu and
Yiqun Gao and
Yan Zheng and
Xuequn Shang},
title = {KF-finder: identification of key factors from host-microbial networks
in cervical cancer},
journal = {{BMC} Syst. Biol.},
volume = {12},
number = {4},
pages = {41--48},
year = {2018},
url = {https://doi.org/10.1186/s12918-018-0566-x},
doi = {10.1186/S12918-018-0566-X},
timestamp = {Mon, 05 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcsb/HuGZS18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/HuZYGYZHSYYMCDH18,
author = {Ling Hu and
Rong Zhang and
Qiong Yuan and
Yinping Gao and
Mary Qu Yang and
Chunxiang Zhang and
Jiankun Huang and
Yufei Sun and
William Yang and
Jack Y. Yang and
Zhen{-}li Min and
Jing Cheng and
Youping Deng and
Xiamin Hu},
title = {The emerging role of microRNA-4487/6845-3p in Alzheimer's disease
pathologies is induced by A{\(\beta\)}25-35 triggered in {SH-SY5Y}
cell},
journal = {{BMC} Syst. Biol.},
volume = {12},
number = {7},
pages = {119:1--119:10},
year = {2018},
url = {https://doi.org/10.1186/s12918-018-0633-3},
doi = {10.1186/S12918-018-0633-3},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/HuZYGYZHSYYMCDH18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/HuangJFLOL18,
author = {Bin Huang and
Dongya Jia and
Jingchen Feng and
Herbert Levine and
Jos{\'{e}} N. Onuchic and
Mingyang Lu},
title = {{RACIPE:} a computational tool for modeling gene regulatory circuits
using randomization},
journal = {{BMC} Syst. Biol.},
volume = {12},
number = {1},
pages = {74:1--74:12},
year = {2018},
url = {https://doi.org/10.1186/s12918-018-0594-6},
doi = {10.1186/S12918-018-0594-6},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/HuangJFLOL18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/HuangLLTY18,
author = {Sing{-}Han Huang and
Yu{-}Shu Lo and
Yong{-}Chun Luo and
Yu{-}Yao Tseng and
Jinn{-}Moon Yang},
title = {A homologous mapping method for three-dimensional reconstruction of
protein networks reveals disease-associated mutations},
journal = {{BMC} Syst. Biol.},
volume = {12},
number = {{S-2}},
pages = {79--91},
year = {2018},
url = {https://doi.org/10.1186/s12918-018-0537-2},
doi = {10.1186/S12918-018-0537-2},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcsb/HuangLLTY18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/HungHPHTWC18,
author = {Kuo{-}Sheng Hung and
Chung{-}Chi Hsiao and
Tun{-}Wen Pai and
Chin{-}Hwa Hu and
Wen{-}Shyong Tzou and
Wen{-}Der Wang and
Yet{-}Ran Chen},
title = {Functional enrichment analysis based on long noncoding {RNA} associations},
journal = {{BMC} Syst. Biol.},
volume = {12},
number = {4},
pages = {109--118},
year = {2018},
url = {https://doi.org/10.1186/s12918-018-0571-0},
doi = {10.1186/S12918-018-0571-0},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/HungHPHTWC18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/JeonKPLK18,
author = {Minji Jeon and
Sunkyu Kim and
Sungjoon Park and
Heewon Lee and
Jaewoo Kang},
title = {In silico drug combination discovery for personalized cancer therapy},
journal = {{BMC} Syst. Biol.},
volume = {12},
number = {{S-2}},
pages = {59--67},
year = {2018},
url = {https://doi.org/10.1186/s12918-018-0546-1},
doi = {10.1186/S12918-018-0546-1},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/JeonKPLK18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/JiaoLW18,
author = {Jianfeng Jiao and
Min Luo and
Ruiqi Wang},
title = {Feedback regulation in a stem cell model with acute myeloid leukaemia},
journal = {{BMC} Syst. Biol.},
volume = {12},
number = {4},
pages = {75--83},
year = {2018},
url = {https://doi.org/10.1186/s12918-018-0561-2},
doi = {10.1186/S12918-018-0561-2},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/JiaoLW18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/JungKBYL18,
author = {Jinmyung Jung and
Mijin Kwon and
Sunghwa Bae and
Soorin Yim and
Doheon Lee},
title = {Petri net-based prediction of therapeutic targets that recover abnormally
phosphorylated proteins in muscle atrophy},
journal = {{BMC} Syst. Biol.},
volume = {12},
number = {1},
pages = {26:1--26:11},
year = {2018},
url = {https://doi.org/10.1186/s12918-018-0555-0},
doi = {10.1186/S12918-018-0555-0},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/JungKBYL18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/JungKKCKJ18,
author = {Inuk Jung and
Hyejin Kang and
Jang Uk Kim and
Hyeonsook Chang and
Sun Kim and
Woosuk Jung},
title = {The mRNA and miRNA transcriptomic landscape of Panax ginseng under
the high ambient temperature},
journal = {{BMC} Syst. Biol.},
volume = {12},
number = {{S-2}},
pages = {117--130},
year = {2018},
url = {https://doi.org/10.1186/s12918-018-0548-z},
doi = {10.1186/S12918-018-0548-Z},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/JungKKCKJ18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/KarpWL18,
author = {Peter D. Karp and
Daniel S. Weaver and
Mario Latendresse},
title = {How accurate is automated gap filling of metabolic models?},
journal = {{BMC} Syst. Biol.},
volume = {12},
number = {1},
pages = {73:1--73:11},
year = {2018},
url = {https://doi.org/10.1186/s12918-018-0593-7},
doi = {10.1186/S12918-018-0593-7},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/KarpWL18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/KavvasSYNPGGPM18,
author = {Erol S. Kavvas and
Yara Seif and
James T. Yurkovich and
Charles J. Norsigian and
Saugat Poudel and
William W. Greenwald and
Sankha Ghatak and
Bernhard O. Palsson and
Jonathan M. Monk},
title = {Updated and standardized genome-scale reconstruction of Mycobacterium
tuberculosis H37Rv, iEK1011, simulates flux states indicative of physiological
conditions},
journal = {{BMC} Syst. Biol.},
volume = {12},
number = {1},
pages = {25:1--25:15},
year = {2018},
url = {https://doi.org/10.1186/s12918-018-0557-y},
doi = {10.1186/S12918-018-0557-Y},
timestamp = {Mon, 26 Apr 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/KavvasSYNPGGPM18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/KhanAJLKCW18,
author = {Abbas Khan and
Arif Ali and
Muhammad Junaid and
Chang Liu and
Aman Chandra Kaushik and
William C. S. Cho and
Dong{-}Qing Wei},
title = {Identification of novel drug targets for diamond-blackfan anemia based
on {RPS19} gene mutation using protein-protein interaction network},
journal = {{BMC} Syst. Biol.},
volume = {12},
number = {4},
pages = {5--16},
year = {2018},
url = {https://doi.org/10.1186/s12918-018-0563-0},
doi = {10.1186/S12918-018-0563-0},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/KhanAJLKCW18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/KramerJZ18,
author = {Frank Kramer and
Steffen Just and
Tanja Zeller},
title = {New perspectives: systems medicine in cardiovascular disease},
journal = {{BMC} Syst. Biol.},
volume = {12},
number = {1},
pages = {57:1--57:13},
year = {2018},
url = {https://doi.org/10.1186/s12918-018-0579-5},
doi = {10.1186/S12918-018-0579-5},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/KramerJZ18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/KremlingGRJ18,
author = {Andreas Kremling and
Johannes Geiselmann and
Delphine Ropers and
Hidde de Jong},
title = {An ensemble of mathematical models showing diauxic growth behaviour},
journal = {{BMC} Syst. Biol.},
volume = {12},
number = {1},
pages = {82:1--82:16},
year = {2018},
url = {https://doi.org/10.1186/s12918-018-0604-8},
doi = {10.1186/S12918-018-0604-8},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/KremlingGRJ18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/KwonLYP18,
author = {Min{-}Seok Kwon and
Sangseob Leem and
Joon Yoon and
Taesung Park},
title = {GxGrare: gene-gene interaction analysis method for rare variants from
high-throughput sequencing data},
journal = {{BMC} Syst. Biol.},
volume = {12},
number = {{S-2}},
pages = {21--31},
year = {2018},
url = {https://doi.org/10.1186/s12918-018-0543-4},
doi = {10.1186/S12918-018-0543-4},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/KwonLYP18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/LegeayARD18,
author = {Marc Legeay and
S{\'{e}}bastien Aubourg and
Jean{-}Pierre Renou and
B{\'{e}}atrice Duval},
title = {Large scale study of anti-sense regulation by differential network
analysis},
journal = {{BMC} Syst. Biol.},
volume = {12},
number = {5},
pages = {27--41},
year = {2018},
url = {https://doi.org/10.1186/s12918-018-0613-7},
doi = {10.1186/S12918-018-0613-7},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/LegeayARD18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/LeiFWC18,
author = {Xiujuan Lei and
Ming Fang and
Fang{-}Xiang Wu and
Luonan Chen},
title = {Improved flower pollination algorithm for identifying essential proteins},
journal = {{BMC} Syst. Biol.},
volume = {12},
number = {4},
pages = {129--140},
year = {2018},
url = {https://doi.org/10.1186/s12918-018-0573-y},
doi = {10.1186/S12918-018-0573-Y},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/LeiFWC18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/LiHB18,
author = {Limin Li and
Xiao He and
Karsten M. Borgwardt},
title = {Multi-target drug repositioning by bipartite block-wise sparse multi-task
learning},
journal = {{BMC} Syst. Biol.},
volume = {12},
number = {4},
pages = {85--97},
year = {2018},
url = {https://doi.org/10.1186/s12918-018-0569-7},
doi = {10.1186/S12918-018-0569-7},
timestamp = {Wed, 25 Oct 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/LiHB18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/LiYALCY18,
author = {Dan Li and
William Yang and
Carolyn Arthur and
Jun S. Liu and
Carolina Cruz{-}Niera and
Mary Qu Yang},
title = {Systems biology analysis reveals new insights into invasive lung cancer},
journal = {{BMC} Syst. Biol.},
volume = {12},
number = {7},
pages = {47--53},
year = {2018},
url = {https://doi.org/10.1186/s12918-018-0637-z},
doi = {10.1186/S12918-018-0637-Z},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/LiYALCY18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/LiZN18,
author = {Chunhe Li and
Lei Zhang and
Qing Nie},
title = {Landscape reveals critical network structures for sharpening gene
expression boundaries},
journal = {{BMC} Syst. Biol.},
volume = {12},
number = {1},
pages = {67:1--67:13},
year = {2018},
url = {https://doi.org/10.1186/s12918-018-0595-5},
doi = {10.1186/S12918-018-0595-5},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/LiZN18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/LiuBAZFCZ18,
author = {Guan{-}Sheng Liu and
Richard Ballweg and
Alan Ashbaugh and
Yin Zhang and
Joseph Facciolo and
Melanie T. Cushion and
Tongli Zhang},
title = {A quantitative systems pharmacology {(QSP)} model for Pneumocystis
treatment in mice},
journal = {{BMC} Syst. Biol.},
volume = {12},
number = {1},
pages = {77:1--77:12},
year = {2018},
url = {https://doi.org/10.1186/s12918-018-0603-9},
doi = {10.1186/S12918-018-0603-9},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/LiuBAZFCZ18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/LiuCHS18,
author = {Fei Liu and
Siyuan Chen and
Monika Heiner and
Hengjie Song},
title = {Modeling biological systems with uncertain kinetic data using fuzzy
continuous Petri nets},
journal = {{BMC} Syst. Biol.},
volume = {12},
number = {4},
pages = {63--74},
year = {2018},
url = {https://doi.org/10.1186/s12918-018-0568-8},
doi = {10.1186/S12918-018-0568-8},
timestamp = {Tue, 29 Dec 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcsb/LiuCHS18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/LiuCWZL18,
author = {Quanya Liu and
Peng Chen and
Bing Wang and
Jun Zhang and
Jinyan Li},
title = {Hot spot prediction in protein-protein interactions by an ensemble
system},
journal = {{BMC} Syst. Biol.},
volume = {12},
number = {9},
pages = {132},
year = {2018},
url = {https://doi.org/10.1186/s12918-018-0665-8},
doi = {10.1186/S12918-018-0665-8},
timestamp = {Sat, 12 Mar 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcsb/LiuCWZL18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/LiuHCLCCL18,
author = {Fang{-}Yu Liu and
Te{-}Cheng Hsu and
Patrick Choong and
Min{-}Hsuan Lin and
Yung{-}Jen Chuang and
Bor{-}Sen Chen and
Che Lin},
title = {Uncovering the regeneration strategies of zebrafish organs: a comprehensive
systems biology study on heart, cerebellum, fin, and retina regeneration},
journal = {{BMC} Syst. Biol.},
volume = {12},
number = {{S-2}},
pages = {33--46},
year = {2018},
url = {https://doi.org/10.1186/s12918-018-0544-3},
doi = {10.1186/S12918-018-0544-3},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/LiuHCLCCL18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/LuoSA18,
author = {Xinyue Luo and
Ruijie Song and
Murat Acar},
title = {Multi-component gene network design as a survival strategy in diverse
environments},
journal = {{BMC} Syst. Biol.},
volume = {12},
number = {1},
pages = {85:1--85:11},
year = {2018},
url = {https://doi.org/10.1186/s12918-018-0609-3},
doi = {10.1186/S12918-018-0609-3},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/LuoSA18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/LyuCJDFL18,
author = {Mengxuan Lyu and
Jiaxing Chen and
Yiqi Jiang and
Wei Dong and
Zhou Fang and
Shuai Cheng Li},
title = {KDiamend: a package for detecting key drivers in a molecular ecological
network of disease},
journal = {{BMC} Syst. Biol.},
volume = {12},
number = {1},
pages = {89--99},
year = {2018},
url = {https://doi.org/10.1186/s12918-018-0531-8},
doi = {10.1186/S12918-018-0531-8},
timestamp = {Mon, 03 Jan 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcsb/LyuCJDFL18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/MartinezRMFLRGB18,
author = {Juan A. Mart{\'{\i}}nez and
Alberto Rodriguez and
Fabian Moreno and
Noem{\'{\i}} Flores and
Alvaro R. Lara and
Octavio T. Ram{\'{\i}}rez and
Guillermo Gosset and
Francisco Bolivar},
title = {Metabolic modeling and response surface analysis of an Escherichia
coli strain engineered for shikimic acid production},
journal = {{BMC} Syst. Biol.},
volume = {12},
number = {1},
pages = {102:1--102:26},
year = {2018},
url = {https://doi.org/10.1186/s12918-018-0632-4},
doi = {10.1186/S12918-018-0632-4},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/MartinezRMFLRGB18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/McNallyB18,
author = {Colin P. McNally and
Elhanan Borenstein},
title = {Metabolic model-based analysis of the emergence of bacterial cross-feeding
via extensive gene loss},
journal = {{BMC} Syst. Biol.},
volume = {12},
number = {1},
pages = {69:1--69:14},
year = {2018},
url = {https://doi.org/10.1186/s12918-018-0588-4},
doi = {10.1186/S12918-018-0588-4},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/McNallyB18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/MessinaFPRU18,
author = {Antonio Messina and
Antonino Fiannaca and
Laura La Paglia and
Massimo La Rosa and
Alfonso Urso},
title = {BioGraph: a web application and a graph database for querying and
analyzing bioinformatics resources},
journal = {{BMC} Syst. Biol.},
volume = {12},
number = {5},
pages = {75--89},
year = {2018},
url = {https://doi.org/10.1186/s12918-018-0616-4},
doi = {10.1186/S12918-018-0616-4},
timestamp = {Mon, 26 Jun 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/MessinaFPRU18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/MeulderLBMCABSP18,
author = {Bertrand De Meulder and
Diane Lefaudeux and
Aruna T. Bansal and
Alexander Mazein and
Amphun Chaiboonchoe and
Hassan Ahmed and
Irina Balaur and
Mansoor A. S. Saqi and
Johann Pellet and
St{\'{e}}phane Ballereau and
Nathana{\"{e}}l Lemonnier and
Kai Sun and
Ioannis Pandis and
Xian Yang and
Manohara Batuwitage and
Kosmas Kretsos and
Jonathan van Eyll and
Alun Bedding and
Timothy Davison and
Paul Dodson and
Christopher Larminie and
Anthony D. Postle and
Julie Corfield and
Ratko Djukanovic and
Kian Fan Chung and
Ian M. Adcock and
Yike Guo and
Peter J. Sterk and
Alexander Manta and
Anthony Rowe and
Fr{\'{e}}d{\'{e}}ric Baribaud and
Charles Auffray},
title = {A computational framework for complex disease stratification from
multiple large-scale datasets},
journal = {{BMC} Syst. Biol.},
volume = {12},
number = {1},
pages = {60:1--60:23},
year = {2018},
url = {https://doi.org/10.1186/s12918-018-0556-z},
doi = {10.1186/S12918-018-0556-Z},
timestamp = {Mon, 22 May 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/MeulderLBMCABSP18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/MiannayMMG18,
author = {Bertrand Miannay and
St{\'{e}}phane Minvielle and
Florence Magrangeas and
Carito Guziolowski},
title = {Constraints on signaling network logic reveal functional subgraphs
on Multiple Myeloma {OMIC} data},
journal = {{BMC} Syst. Biol.},
volume = {12},
number = {3},
pages = {25--37},
year = {2018},
url = {https://doi.org/10.1186/s12918-018-0551-4},
doi = {10.1186/S12918-018-0551-4},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/MiannayMMG18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/MishraLLKKL18,
author = {Pranjul Mishra and
Na{-}Rae Lee and
Meiyappan Lakshmanan and
Minsuk Kim and
Byung{-}Gee Kim and
Dong{-}Yup Lee},
title = {Genome-scale model-driven strain design for dicarboxylic acid production
in Yarrowia lipolytica},
journal = {{BMC} Syst. Biol.},
volume = {12},
number = {{S-2}},
pages = {9--20},
year = {2018},
url = {https://doi.org/10.1186/s12918-018-0542-5},
doi = {10.1186/S12918-018-0542-5},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/MishraLLKKL18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/MoriMYYK18,
author = {Hiroshi Mori and
Takayuki Maruyama and
Masahiro Yano and
Takuji Yamada and
Ken Kurokawa},
title = {{VITCOMIC2:} visualization tool for the phylogenetic composition of
microbial communities based on 16S rRNA gene amplicons and metagenomic
shotgun sequencing},
journal = {{BMC} Syst. Biol.},
volume = {12},
number = {{S-2}},
pages = {47--58},
year = {2018},
url = {https://doi.org/10.1186/s12918-018-0545-2},
doi = {10.1186/S12918-018-0545-2},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/MoriMYYK18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/MoriNHAN18,
author = {Takuya Mori and
Hayliang Ngouv and
Morihiro Hayashida and
Tatsuya Akutsu and
Jose C. Nacher},
title = {ncRNA-disease association prediction based on sequence information
and tripartite network},
journal = {{BMC} Syst. Biol.},
volume = {12},
number = {1},
pages = {41--51},
year = {2018},
url = {https://doi.org/10.1186/s12918-018-0527-4},
doi = {10.1186/S12918-018-0527-4},
timestamp = {Fri, 09 Apr 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/MoriNHAN18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/MukherjeeHBK18,
author = {Kingshuk Mukherjee and
Md Mahmudul Hasan and
Christina Boucher and
Tamer Kahveci},
title = {Counting motifs in dynamic networks},
journal = {{BMC} Syst. Biol.},
volume = {12},
number = {1},
pages = {1--12},
year = {2018},
url = {https://doi.org/10.1186/s12918-018-0533-6},
doi = {10.1186/S12918-018-0533-6},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/MukherjeeHBK18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/NeumannWRMR18,
author = {G{\"{u}}nter Neumann and
Rebecca Wall and
Ignacio Rangel and
Tatiana M. Marques and
Dirk Repsilber},
title = {Qualitative modelling of the interplay of inflammatory status and
butyrate in the human gut: a hypotheses about robust bi-stability},
journal = {{BMC} Syst. Biol.},
volume = {12},
number = {1},
pages = {144:1--144:11},
year = {2018},
url = {https://doi.org/10.1186/s12918-018-0667-6},
doi = {10.1186/S12918-018-0667-6},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/NeumannWRMR18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/OlneyNVSH18,
author = {Kimberly C. Olney and
David B. Nyer and
Daniel A. Vargas and
Melissa A. Wilson Sayres and
Karmella A. Haynes},
title = {The synthetic histone-binding regulator protein PcTF activates interferon
genes in breast cancer cells},
journal = {{BMC} Syst. Biol.},
volume = {12},
number = {1},
pages = {83:1--83:17},
year = {2018},
url = {https://doi.org/10.1186/s12918-018-0608-4},
doi = {10.1186/S12918-018-0608-4},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/OlneyNVSH18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/OrdinelliBOMB18,
author = {Alessandra Ordinelli and
Nicola Bernab{\`{o}} and
Massimiliano Orsini and
Mauro Mattioli and
Barbara Barboni},
title = {Putative human sperm Interactome: a networks study},
journal = {{BMC} Syst. Biol.},
volume = {12},
number = {1},
pages = {52:1--52:10},
year = {2018},
url = {https://doi.org/10.1186/s12918-018-0578-6},
doi = {10.1186/S12918-018-0578-6},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/OrdinelliBOMB18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/PapacekJP18,
author = {Step{\'{a}}n Pap{\'{a}}cek and
Jiri Jablonsky and
Karel Petera},
title = {Advanced integration of fluid dynamics and photosynthetic reaction
kinetics for microalgae culture systems},
journal = {{BMC} Syst. Biol.},
volume = {12},
number = {5},
pages = {93:1--93:12},
year = {2018},
url = {https://doi.org/10.1186/s12918-018-0611-9},
doi = {10.1186/S12918-018-0611-9},
timestamp = {Fri, 09 Apr 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/PapacekJP18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/ParkKSHJJJK18,
author = {Sungjoon Park and
Jung Min Kim and
Won{-}Ho Shin and
Sung Won Han and
Minji Jeon and
Hyun Jin Jang and
Ik{-}Soon Jang and
Jaewoo Kang},
title = {{BTNET} : boosted tree based gene regulatory network inference algorithm
using time-course measurement data},
journal = {{BMC} Syst. Biol.},
volume = {12},
number = {{S-2}},
pages = {69--77},
year = {2018},
url = {https://doi.org/10.1186/s12918-018-0547-0},
doi = {10.1186/S12918-018-0547-0},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcsb/ParkKSHJJJK18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/PengZHLLLS18,
author = {Jiajie Peng and
Xuanshuo Zhang and
Weiwei Hui and
Junya Lu and
Qianqian Li and
Shuhui Liu and
Xuequn Shang},
title = {Improving the measurement of semantic similarity by combining gene
ontology and co-functional network: a random walk based approach},
journal = {{BMC} Syst. Biol.},
volume = {12},
number = {{S-2}},
pages = {109--116},
year = {2018},
url = {https://doi.org/10.1186/s12918-018-0539-0},
doi = {10.1186/S12918-018-0539-0},
timestamp = {Sun, 25 Jul 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/PengZHLLLS18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/PereiraMVSRC18,
author = {Bruno Pereira and
Joana Miguel and
Paulo Vila{\c{c}}a and
Sim{\~{a}}o Soares and
Isabel Rocha and
S{\'{o}}nia Carneiro},
title = {Reconstruction of a genome-scale metabolic model for Actinobacillus
succinogenes 130Z},
journal = {{BMC} Syst. Biol.},
volume = {12},
number = {1},
pages = {61:1--61:12},
year = {2018},
url = {https://doi.org/10.1186/s12918-018-0585-7},
doi = {10.1186/S12918-018-0585-7},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/PereiraMVSRC18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/PrestonWRSEF18,
author = {Claudia C. Preston and
Saranya Wyles and
Santiago Reyes and
Emily C. Storm and
Bruce W. Eckloff and
Randolph Faustino},
title = {{NUP155} insufficiency recalibrates a pluripotent transcriptome with
network remodeling of a cardiogenic signaling module},
journal = {{BMC} Syst. Biol.},
volume = {12},
number = {1},
pages = {62:1--62:13},
year = {2018},
url = {https://doi.org/10.1186/s12918-018-0590-x},
doi = {10.1186/S12918-018-0590-X},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/PrestonWRSEF18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/QiuJCC18,
author = {Yushan Qiu and
Hao Jiang and
Wai{-}Ki Ching and
Xiaoqing Cheng},
title = {Discovery of Boolean metabolic networks: integer linear programming
based approach},
journal = {{BMC} Syst. Biol.},
volume = {12},
number = {1},
pages = {53--60},
year = {2018},
url = {https://doi.org/10.1186/s12918-018-0528-3},
doi = {10.1186/S12918-018-0528-3},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/QiuJCC18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/RanjanCZ18,
author = {Bobby Ranjan and
Ket Hing Chong and
Jie Zheng},
title = {Composite mathematical modeling of calcium signaling behind neuronal
cell death in Alzheimer's disease},
journal = {{BMC} Syst. Biol.},
volume = {12},
number = {1},
pages = {61--74},
year = {2018},
url = {https://doi.org/10.1186/s12918-018-0529-2},
doi = {10.1186/S12918-018-0529-2},
timestamp = {Thu, 02 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcsb/RanjanCZ18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/RossBWC18,
author = {Brian C. Ross and
Mayla Boguslav and
Holly Weeks and
James C. Costello},
title = {Simulating heterogeneous populations using Boolean models},
journal = {{BMC} Syst. Biol.},
volume = {12},
number = {1},
pages = {64:1--64:11},
year = {2018},
url = {https://doi.org/10.1186/s12918-018-0591-9},
doi = {10.1186/S12918-018-0591-9},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/RossBWC18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/RowePK18,
author = {Elliot Rowe and
Bernhard O. Palsson and
Zachary A. King},
title = {Escher-FBA: a web application for interactive flux balance analysis},
journal = {{BMC} Syst. Biol.},
volume = {12},
number = {1},
pages = {84:1--84:7},
year = {2018},
url = {https://doi.org/10.1186/s12918-018-0607-5},
doi = {10.1186/S12918-018-0607-5},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/RowePK18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/RowlandWWGM18,
author = {Michael A. Rowland and
Hannah Wear and
Karen H. Watanabe and
Kurt A. Gust and
Michael L. Mayo},
title = {Statistical relationship between metabolic decomposition and chemical
uptake predicts bioconcentration factor data for diverse chemical
exposures},
journal = {{BMC} Syst. Biol.},
volume = {12},
number = {1},
pages = {81:1--81:12},
year = {2018},
url = {https://doi.org/10.1186/s12918-018-0601-y},
doi = {10.1186/S12918-018-0601-Y},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcsb/RowlandWWGM18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/RucciGBGNP18,
author = {Enzo Rucci and
Carlos Garc{\'{\i}}a and
Guillermo Botella and
Armando De Giusti and
Marcelo R. Naiouf and
Manuel Prieto},
title = {{SWIFOLD:} Smith-Waterman implementation on {FPGA} with OpenCL for
long {DNA} sequences},
journal = {{BMC} Syst. Biol.},
volume = {12},
number = {5},
pages = {43--53},
year = {2018},
url = {https://doi.org/10.1186/s12918-018-0614-6},
doi = {10.1186/S12918-018-0614-6},
timestamp = {Mon, 26 Jun 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/RucciGBGNP18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/Sadre-MarandiDR18,
author = {Farrah Sadre{-}Marandi and
Thabat Dahdoul and
Michael C. Reed and
H. Frederik Nijhout},
title = {Sex differences in hepatic one-carbon metabolism},
journal = {{BMC} Syst. Biol.},
volume = {12},
number = {1},
pages = {89:1--89:13},
year = {2018},
url = {https://doi.org/10.1186/s12918-018-0621-7},
doi = {10.1186/S12918-018-0621-7},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/Sadre-MarandiDR18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/SaeedABPSPHA18,
author = {Muhammad Tariq Saeed and
Jamil Ahmad and
Jan Baumbach and
Josch Pauling and
Aamir Shafi and
Rehan Zafar Paracha and
Asad Hayat and
Amjad Ali},
title = {Parameter estimation of qualitative biological regulatory networks
on high performance computing hardware},
journal = {{BMC} Syst. Biol.},
volume = {12},
number = {1},
pages = {146:1--146:15},
year = {2018},
url = {https://doi.org/10.1186/s12918-018-0670-y},
doi = {10.1186/S12918-018-0670-Y},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/SaeedABPSPHA18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/SagarLSV18,
author = {Adithya Sagar and
Rachel LeCover and
Christine Ann Shoemaker and
Jeffrey D. Varner},
title = {Dynamic Optimization with Particle Swarms {(DOPS):} a meta-heuristic
for parameter estimation in biochemical models},
journal = {{BMC} Syst. Biol.},
volume = {12},
number = {1},
pages = {87:1--87:15},
year = {2018},
url = {https://doi.org/10.1186/s12918-018-0610-x},
doi = {10.1186/S12918-018-0610-X},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/SagarLSV18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/ScharmGTBSWW18,
author = {Martin Scharm and
Tom Gebhardt and
Vasundra Tour{\'{e}} and
Andrea Bagnacani and
Ali Salehzadeh{-}Yazdi and
Olaf Wolkenhauer and
Dagmar Waltemath},
title = {Evolution of computational models in BioModels Database and the Physiome
Model Repository},
journal = {{BMC} Syst. Biol.},
volume = {12},
number = {1},
pages = {53:1--53:10},
year = {2018},
url = {https://doi.org/10.1186/s12918-018-0553-2},
doi = {10.1186/S12918-018-0553-2},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/ScharmGTBSWW18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/SedghamizMCWB18,
author = {Hooman Sedghamiz and
Matthew C. Morris and
Travis J. A. Craddock and
L. Darrell Whitley and
Gordon Broderick},
title = {High-fidelity discrete modeling of the {HPA} axis: a study of regulatory
plasticity in biology},
journal = {{BMC} Syst. Biol.},
volume = {12},
number = {1},
pages = {76:1--76:16},
year = {2018},
url = {https://doi.org/10.1186/s12918-018-0599-1},
doi = {10.1186/S12918-018-0599-1},
timestamp = {Thu, 12 Jan 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcsb/SedghamizMCWB18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/ShahenGSETZWBFZ18,
author = {Mohamed Shahen and
Zihu Guo and
Akhtar Hussain Shar and
Reham Ebaid and
Qin Tao and
Wenjuan Zhang and
Ziyin Wu and
Yaofei Bai and
Yingxue Fu and
Chunli Zheng and
He Wang and
Piar Ali Shar and
Jianling Liu and
Zhenzhong Wang and
Wei Xiao and
Yonghua Wang},
title = {Dengue virus causes changes of MicroRNA-genes regulatory network revealing
potential targets for antiviral drugs},
journal = {{BMC} Syst. Biol.},
volume = {12},
number = {1},
pages = {2:1--2:13},
year = {2018},
url = {https://doi.org/10.1186/s12918-017-0518-x},
doi = {10.1186/S12918-017-0518-X},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcsb/ShahenGSETZWBFZ18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/ShahenGSETZWBFZ18a,
author = {Mohamed Shahen and
Zihu Guo and
Akhtar Hussain Shar and
Reham Ebaid and
Qin Tao and
Wenjuan Zhang and
Ziyin Wu and
Yaofei Bai and
Yingxue Fu and
Chunli Zheng and
He Wang and
Piar Ali Shar and
Jianling Liu and
Zhenzhong Wang and
Wei Xiao and
Yonghua Wang},
title = {Correction to: dengue virus causes changes of MicroRNA-genes regulatory
network revealing potential targets for antiviral drugs},
journal = {{BMC} Syst. Biol.},
volume = {12},
number = {1},
pages = {21:1},
year = {2018},
url = {https://doi.org/10.1186/s12918-018-0536-3},
doi = {10.1186/S12918-018-0536-3},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcsb/ShahenGSETZWBFZ18a.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/ShenWSZCQWL18,
author = {Fangzhou Shen and
Xueting Wu and
Luoxi Shi and
Hang Zhang and
Yangmin Chen and
Xiaoquan Qi and
Zhuo Wang and
Xuan Li},
title = {Transcriptomic and metabolic flux analyses reveal shift of metabolic
patterns during rice grain development},
journal = {{BMC} Syst. Biol.},
volume = {12},
number = {4},
pages = {141--156},
year = {2018},
url = {https://doi.org/10.1186/s12918-018-0574-x},
doi = {10.1186/S12918-018-0574-X},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/ShenWSZCQWL18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/SmithRSF18,
author = {Robert W. Smith and
Rik P. van Rosmalen and
V{\'{\i}}tor A. P. Martins dos Santos and
Christian Fleck},
title = {DMPy: a Python package for automated mathematical model construction
of large-scale metabolic systems},
journal = {{BMC} Syst. Biol.},
volume = {12},
number = {1},
pages = {72:1--72:16},
year = {2018},
url = {https://doi.org/10.1186/s12918-018-0584-8},
doi = {10.1186/S12918-018-0584-8},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/SmithRSF18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/SongF18,
author = {Min Song and
Stacey D. Finley},
title = {Mechanistic insight into activation of {MAPK} signaling by pro-angiogenic
factors},
journal = {{BMC} Syst. Biol.},
volume = {12},
number = {1},
pages = {145:1--145:17},
year = {2018},
url = {https://doi.org/10.1186/s12918-018-0668-5},
doi = {10.1186/S12918-018-0668-5},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/SongF18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/StromeHMZBM18,
author = {Bob Strome and
Ian Shenyen Hsu and
Mitchell Li Cheong Man and
Taraneh Zarin and
Alex N. Nguyen Ba and
Alan M. Moses},
title = {Short linear motifs in intrinsically disordered regions modulate {HOG}
signaling capacity},
journal = {{BMC} Syst. Biol.},
volume = {12},
number = {1},
pages = {75:1--75:13},
year = {2018},
url = {https://doi.org/10.1186/s12918-018-0597-3},
doi = {10.1186/S12918-018-0597-3},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/StromeHMZBM18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/TeraguchiK18,
author = {Shunsuke Teraguchi and
Yutaro Kumagai},
title = {Estimation of diffusion constants from single molecular measurement
without explicit tracking},
journal = {{BMC} Syst. Biol.},
volume = {12},
number = {1},
pages = {25--39},
year = {2018},
url = {https://doi.org/10.1186/s12918-018-0526-5},
doi = {10.1186/S12918-018-0526-5},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/TeraguchiK18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/ThomasS18,
author = {Marcus Thomas and
Russell Schwartz},
title = {A method for efficient Bayesian optimization of self-assembly systems
from scattering data},
journal = {{BMC} Syst. Biol.},
volume = {12},
number = {1},
pages = {65:1--65:17},
year = {2018},
url = {https://doi.org/10.1186/s12918-018-0592-8},
doi = {10.1186/S12918-018-0592-8},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/ThomasS18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/TianTCG18,
author = {Zhen Tian and
Zhixia Teng and
Shuang Cheng and
Maozu Guo},
title = {Computational drug repositioning using meta-path-based semantic network
analysis},
journal = {{BMC} Syst. Biol.},
volume = {12},
number = {9},
pages = {134},
year = {2018},
url = {https://doi.org/10.1186/s12918-018-0658-7},
doi = {10.1186/S12918-018-0658-7},
timestamp = {Wed, 11 Nov 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcsb/TianTCG18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/UrdaABFVCJ18,
author = {Daniel Urda and
Francisco Arag{\'{o}}n and
Roc{\'{\i}}o Bautista and
Leonardo Franco and
Francisco J. Veredas and
Manuel Gonzalo Claros and
Jos{\'{e}} Manuel Jerez},
title = {{BLASSO:} integration of biological knowledge into a regularized linear
model},
journal = {{BMC} Syst. Biol.},
volume = {12},
number = {5},
pages = {13--26},
year = {2018},
url = {https://doi.org/10.1186/s12918-018-0612-8},
doi = {10.1186/S12918-018-0612-8},
timestamp = {Tue, 29 Dec 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcsb/UrdaABFVCJ18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/ValdesGRDYGRC18,
author = {Mar{\'{\i}}a Gabriela Vald{\'{e}}s and
Iv{\'{a}}n Galv{\'{a}}n{-}Femen{\'{\i}}a and
Vicent J. Ribas Ripoll and
Xavier Duran and
Jun Yokota and
Ricard Gavald{\`{a}} and
Xavier Rafael{-}Palou and
Rafael de Cid},
title = {Pipeline design to identify key features and classify the chemotherapy
response on lung cancer patients using large-scale genetic data},
journal = {{BMC} Syst. Biol.},
volume = {12},
number = {5},
pages = {55--74},
year = {2018},
url = {https://doi.org/10.1186/s12918-018-0615-5},
doi = {10.1186/S12918-018-0615-5},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcsb/ValdesGRDYGRC18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/Vazquez-Hernandez18,
author = {Carlos Vazquez{-}Hernandez and
Antonio Loza and
Esteban Peguero{-}Sanchez and
Lorenzo Segovia and
Rosa{-}Mar{\'{\i}}a Guti{\'{e}}rrez{-}R{\'{\i}}os},
title = {Identification of reaction organization patterns that naturally cluster
enzymatic transformations},
journal = {{BMC} Syst. Biol.},
volume = {12},
number = {1},
pages = {63:1--63:17},
year = {2018},
url = {https://doi.org/10.1186/s12918-018-0583-9},
doi = {10.1186/S12918-018-0583-9},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/Vazquez-Hernandez18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/VernonLGRTL18,
author = {Ian R. Vernon and
Junli Liu and
Michael Goldstein and
James Rowe and
Jen Topping and
Keith Lindsey},
title = {Bayesian uncertainty analysis for complex systems biology models:
emulation, global parameter searches and evaluation of gene functions},
journal = {{BMC} Syst. Biol.},
volume = {12},
number = {1},
pages = {1:1--1:29},
year = {2018},
url = {https://doi.org/10.1186/s12918-017-0484-3},
doi = {10.1186/S12918-017-0484-3},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/VernonLGRTL18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/WangAMB18,
author = {Zhang Wang and
Seda Arat and
Michal Magid{-}Slav and
James R. Brown},
title = {Meta-analysis of human gene expression in response to Mycobacterium
tuberculosis infection reveals potential therapeutic targets},
journal = {{BMC} Syst. Biol.},
volume = {12},
number = {1},
pages = {3:1--3:18},
year = {2018},
url = {https://doi.org/10.1186/s12918-017-0524-z},
doi = {10.1186/S12918-017-0524-Z},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/WangAMB18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/WangYLJCC18,
author = {Yan{-}Bin Wang and
Zhu{-}Hong You and
Xiao Li and
Tong{-}Hai Jiang and
Li Cheng and
Zhan{-}Heng Chen},
title = {Prediction of protein self-interactions using stacked long short-term
memory from protein sequences information},
journal = {{BMC} Syst. Biol.},
volume = {12},
number = {8},
pages = {129},
year = {2018},
url = {https://doi.org/10.1186/s12918-018-0647-x},
doi = {10.1186/S12918-018-0647-X},
timestamp = {Wed, 07 Dec 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcsb/WangYLJCC18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/WangZC18,
author = {Yong Wang and
Xiang{-}Sun Zhang and
Luonan Chen},
title = {Integrating data- and model-driven strategies in systems biology},
journal = {{BMC} Syst. Biol.},
volume = {12},
number = {4},
pages = {38:1--38:3},
year = {2018},
url = {https://doi.org/10.1186/s12918-018-0562-1},
doi = {10.1186/S12918-018-0562-1},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/WangZC18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/WoodhousePWGF18,
author = {Steven Woodhouse and
Nir Piterman and
Christoph M. Wintersteiger and
Berthold G{\"{o}}ttgens and
Jasmin Fisher},
title = {{SCNS:} a graphical tool for reconstructing executable regulatory
networks from single-cell genomic data},
journal = {{BMC} Syst. Biol.},
volume = {12},
number = {1},
pages = {59:1--59:7},
year = {2018},
url = {https://doi.org/10.1186/s12918-018-0581-y},
doi = {10.1186/S12918-018-0581-Y},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/WoodhousePWGF18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/YangWYZCG18,
author = {Mary Qu Yang and
Sherman Morton Weissman and
William Yang and
Jialing Zhang and
Allon Canaan and
Renchu Guan},
title = {{MISC:} missing imputation for single-cell {RNA} sequencing data},
journal = {{BMC} Syst. Biol.},
volume = {12},
number = {7},
pages = {55--63},
year = {2018},
url = {https://doi.org/10.1186/s12918-018-0638-y},
doi = {10.1186/S12918-018-0638-Y},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/YangWYZCG18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/YangWZXZCW18,
author = {Fang Yang and
Meng Wang and
Baoyun Zhang and
Wei Xiang and
Ke Zhang and
Mingxin Chu and
Pingqing Wang},
title = {Identification of new progestogen-associated networks in mammalian
ovulation using bioinformatics},
journal = {{BMC} Syst. Biol.},
volume = {12},
number = {1},
pages = {36:1--36:12},
year = {2018},
url = {https://doi.org/10.1186/s12918-018-0577-7},
doi = {10.1186/S12918-018-0577-7},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/YangWZXZCW18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/YangXMKGZ18,
author = {Bei Yang and
Yaohui Xu and
Andrew S. Maxwell and
Wonryull Koh and
Ping Gong and
Chaoyang Zhang},
title = {{MICRAT:} a novel algorithm for inferring gene regulatory networks
using time series gene expression data},
journal = {{BMC} Syst. Biol.},
volume = {12},
number = {7},
pages = {19--29},
year = {2018},
url = {https://doi.org/10.1186/s12918-018-0635-1},
doi = {10.1186/S12918-018-0635-1},
timestamp = {Tue, 24 Aug 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/YangXMKGZ18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/YimYJL18,
author = {Soorin Yim and
Hasun Yu and
Dongjin Jang and
Doheon Lee},
title = {Annotating activation/inhibition relationships to protein-protein
interactions using gene ontology relations},
journal = {{BMC} Syst. Biol.},
volume = {12},
number = {1},
pages = {111--122},
year = {2018},
url = {https://doi.org/10.1186/s12918-018-0535-4},
doi = {10.1186/S12918-018-0535-4},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/YimYJL18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/YuMSHCDY18,
author = {Hui Yu and
Kui{-}Tao Mao and
Jian{-}Yu Shi and
Hua Huang and
Zhi Chen and
Kai Dong and
Siu{-}Ming Yiu},
title = {Predicting and understanding comprehensive drug-drug interactions
via semi-nonnegative matrix factorization},
journal = {{BMC} Syst. Biol.},
volume = {12},
number = {1},
pages = {101--110},
year = {2018},
url = {https://doi.org/10.1186/s12918-018-0532-7},
doi = {10.1186/S12918-018-0532-7},
timestamp = {Thu, 27 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/YuMSHCDY18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/YuNTZ18,
author = {Peijia Yu and
Qing Nie and
Chao Tang and
Lei Zhang},
title = {Nanog induced intermediate state in regulating stem cell differentiation
and reprogramming},
journal = {{BMC} Syst. Biol.},
volume = {12},
number = {1},
pages = {22:1--22:13},
year = {2018},
url = {https://doi.org/10.1186/s12918-018-0552-3},
doi = {10.1186/S12918-018-0552-3},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcsb/YuNTZ18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/YurkovichBSP18,
author = {James T. Yurkovich and
Aarash Bordbar and
{\'{O}}lafur E. Sigurj{\'{o}}nsson and
Bernhard O. Palsson},
title = {Systems biology as an emerging paradigm in transfusion medicine},
journal = {{BMC} Syst. Biol.},
volume = {12},
number = {1},
pages = {31:1--31:9},
year = {2018},
url = {https://doi.org/10.1186/s12918-018-0558-x},
doi = {10.1186/S12918-018-0558-X},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/YurkovichBSP18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/ZecenaTWFPLSSBT18,
author = {Helma Zecena and
Daniel Tveit and
Zi Wang and
Ahmed Farhat and
Parvita Panchal and
Jing Liu and
Simar J. Singh and
Amandeep Sanghera and
Ajay Bainiwal and
Shuan Y. Teo and
Frank L. Meyskens Jr and
Feng Liu{-}Smith and
Fabian V. Filipp},
title = {Systems biology analysis of mitogen activated protein kinase inhibitor
resistance in malignant melanoma},
journal = {{BMC} Syst. Biol.},
volume = {12},
number = {1},
pages = {33:1--33:12},
year = {2018},
url = {https://doi.org/10.1186/s12918-018-0554-1},
doi = {10.1186/S12918-018-0554-1},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/ZecenaTWFPLSSBT18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/Zhang18,
author = {Shuqin Zhang},
title = {Comparisons of gene coexpression network modules in breast cancer
and ovarian cancer},
journal = {{BMC} Syst. Biol.},
volume = {12},
number = {1},
pages = {75--87},
year = {2018},
url = {https://doi.org/10.1186/s12918-018-0530-9},
doi = {10.1186/S12918-018-0530-9},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/Zhang18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/Zhang18a,
author = {Qingyang Zhang},
title = {A powerful nonparametric method for detecting differentially co-expressed
genes: distance correlation screening and edge-count test},
journal = {{BMC} Syst. Biol.},
volume = {12},
number = {1},
pages = {58:1--58:16},
year = {2018},
url = {https://doi.org/10.1186/s12918-018-0582-x},
doi = {10.1186/S12918-018-0582-X},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/Zhang18a.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/ZhangGZ18,
author = {Ke Zhang and
Wei Geng and
Shuqin Zhang},
title = {Network-based logistic regression integration method for biomarker
identification},
journal = {{BMC} Syst. Biol.},
volume = {12},
number = {9},
pages = {135},
year = {2018},
url = {https://doi.org/10.1186/s12918-018-0657-8},
doi = {10.1186/S12918-018-0657-8},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/ZhangGZ18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/ZhangSTXG18,
author = {Zehua Zhang and
Jian Song and
Jijun Tang and
Xinying Xu and
Fei Guo},
title = {Detecting complexes from edge-weighted {PPI} networks via genes expression
analysis},
journal = {{BMC} Syst. Biol.},
volume = {12},
number = {4},
pages = {29--40},
year = {2018},
url = {https://doi.org/10.1186/s12918-018-0565-y},
doi = {10.1186/S12918-018-0565-Y},
timestamp = {Tue, 12 Apr 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/ZhangSTXG18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/ZhangYY18,
author = {Bo Zhang and
Hua Ye and
Aidong Yang},
title = {Mathematical modelling of interacting mechanisms for hypoxia mediated
cell cycle commitment for mesenchymal stromal cells},
journal = {{BMC} Syst. Biol.},
volume = {12},
number = {1},
pages = {35:1--35:18},
year = {2018},
url = {https://doi.org/10.1186/s12918-018-0560-3},
doi = {10.1186/S12918-018-0560-3},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/ZhangYY18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/ZouAWY18,
author = {Xudong Zou and
Ke An and
Yun{-}Dong Wu and
Zhi{-}Qiang Ye},
title = {{PPI} network analyses of human {WD40} protein family systematically
reveal their tendency to assemble complexes and facilitate the complex
predictions},
journal = {{BMC} Syst. Biol.},
volume = {12},
number = {4},
pages = {49--62},
year = {2018},
url = {https://doi.org/10.1186/s12918-018-0567-9},
doi = {10.1186/S12918-018-0567-9},
timestamp = {Thu, 19 Nov 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcsb/ZouAWY18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/Hall-SwanCNC18,
title = {Detangling {PPI} networks to uncover functionally meaningful clusters},
journal = {{BMC} Syst. Biol.},
volume = {12},
number = {3},
pages = {11--23},
year = {2018},
note = {Withdrawn.},
url = {https://doi.org/10.1186/s12918-018-0550-5},
doi = {10.1186/S12918-018-0550-5},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/Hall-SwanCNC18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/Abd-RabboM17,
author = {Diala Abd{-}Rabbo and
Stephen W. Michnick},
title = {Delineating functional principles of the bow tie structure of a kinase-phosphatase
network in the budding yeast},
journal = {{BMC} Syst. Biol.},
volume = {11},
number = {1},
pages = {38:1--38:14},
year = {2017},
url = {https://doi.org/10.1186/s12918-017-0418-0},
doi = {10.1186/S12918-017-0418-0},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/Abd-RabboM17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/AguileraZK17,
author = {Luis U. Aguilera and
Christoph Zimmer and
Ursula Kummer},
title = {A new efficient approach to fit stochastic models on the basis of
high-throughput experimental data using a model of {IRF7} gene expression
as case study},
journal = {{BMC} Syst. Biol.},
volume = {11},
number = {1},
pages = {26:1--26:14},
year = {2017},
url = {https://doi.org/10.1186/s12918-017-0406-4},
doi = {10.1186/S12918-017-0406-4},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/AguileraZK17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/AmsteinASFDK17,
author = {Leonie Amstein and
J{\"{o}}rg Ackermann and
Jennifer Scheidel and
Simone Fulda and
Ivan Dikic and
Ina Koch},
title = {Manatee invariants reveal functional pathways in signaling networks},
journal = {{BMC} Syst. Biol.},
volume = {11},
number = {1},
pages = {72:1--72:11},
year = {2017},
url = {https://doi.org/10.1186/s12918-017-0448-7},
doi = {10.1186/S12918-017-0448-7},
timestamp = {Mon, 03 Jan 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcsb/AmsteinASFDK17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/AquinoHJLHCEHJS17,
author = {Patricia Aquino and
Brent Honda and
Suma Jaini and
Anna Lyubetskaya and
Krutika Hosur and
Joanna G. Chiu and
Iriny Ekladious and
Dongjian Hu and
Lin Jin and
Marianna K. Sayeg and
Arion Stettner and
Julia Wang and
Brandon G. Wong and
Winnie S. Wong and
Stephen L. Alexander and
Cong Ba and
Seth I. Bensussen and
David B. Bernstein and
Dana Braff and
Susie Cha and
Daniel I. Cheng and
Jang{-}Hwan Cho and
Kenny Chou and
James Chuang and
Daniel E. Gastler and
Daniel J. Grasso and
John S. Greifenberger and
Chen Guo and
Anna K. Hawes and
Divya V. Israni and
Saloni R. Jain and
Jessica Kim and
Junyu Lei and
Hao Li and
David Li and
Qian Li and
Christopher P. Mancuso and
Ning Mao and
Salwa F. Masud and
Cari L. Meisel and
Jing Mi and
Christine S. Nykyforchyn and
Minhee Park and
Hannah M. Peterson and
Alfred K. Ramirez and
Daniel S. Reynolds and
Nae Gyune Rim and
Jared C. Saffie and
Hang Su and
Wendell R. Su and
Yaqing Su and
Meng Sun and
Meghan M. Thommes and
Tao Tu and
Nitinun Varongchayakul and
Tyler E. Wagner and
Benjamin H. Weinberg and
Rouhui Yang and
Anastasia Yaroslavsky and
Christine Yoon and
Yanyu Zhao and
Alicia J. Zollinger and
Anne M. Stringer and
John W. Foster and
Joseph Wade and
Sahadaven Raman and
Natasha Broude and
Wilson W. Wong and
James E. Galagan},
title = {Coordinated regulation of acid resistance in Escherichia coli},
journal = {{BMC} Syst. Biol.},
volume = {11},
number = {1},
pages = {1:1--1:15},
year = {2017},
url = {https://doi.org/10.1186/s12918-016-0376-y},
doi = {10.1186/S12918-016-0376-Y},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/AquinoHJLHCEHJS17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/AsamiKK17,
author = {Shun Asami and
Daisuke Kiga and
Akihiko Konagaya},
title = {Constraint-based perturbation analysis with cluster Newton method:
a case study of personalized parameter estimations with irinotecan
whole-body physiologically based pharmacokinetic model},
journal = {{BMC} Syst. Biol.},
volume = {11},
number = {{S-7}},
pages = {151--162},
year = {2017},
url = {https://doi.org/10.1186/s12918-017-0513-2},
doi = {10.1186/S12918-017-0513-2},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/AsamiKK17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/AvramidisA17,
author = {Eleftherios Avramidis and
Ozgur E. Akman},
title = {Optimisation of an exemplar oculomotor model using multi-objective
genetic algorithms executed on a {GPU-CPU} combination},
journal = {{BMC} Syst. Biol.},
volume = {11},
number = {1},
pages = {40:1--40:23},
year = {2017},
url = {https://doi.org/10.1186/s12918-017-0416-2},
doi = {10.1186/S12918-017-0416-2},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/AvramidisA17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/Balasubramanian17,
author = {Pavithra K. Balasubramanian and
Anand Balupuri and
Hee{-}Young Kang and
Seung Joo Cho},
title = {Receptor-guided 3D-QSAR studies, molecular dynamics simulation and
free energy calculations of Btk kinase inhibitors},
journal = {{BMC} Syst. Biol.},
volume = {11},
number = {{S-2}},
pages = {6:1--6:11},
year = {2017},
url = {https://doi.org/10.1186/s12918-017-0385-5},
doi = {10.1186/S12918-017-0385-5},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/Balasubramanian17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/BallnusHHGHT17,
author = {Benjamin Ballnus and
Sabine Hug and
Kathrin Hatz and
Linus G{\"{o}}rlitz and
Jan Hasenauer and
Fabian J. Theis},
title = {Comprehensive benchmarking of Markov chain Monte Carlo methods for
dynamical systems},
journal = {{BMC} Syst. Biol.},
volume = {11},
number = {1},
pages = {63:1--63:18},
year = {2017},
url = {https://doi.org/10.1186/s12918-017-0433-1},
doi = {10.1186/S12918-017-0433-1},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/BallnusHHGHT17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/BalomenosTATKM17,
author = {Athanasios D. Balomenos and
Panagiotis Tsakanikas and
Zafiro Aspridou and
Anastasia P. Tampakaki and
Konstantinos P. Koutsoumanis and
Elias S. Manolakos},
title = {Image analysis driven single-cell analytics for systems microbiology},
journal = {{BMC} Syst. Biol.},
volume = {11},
number = {1},
pages = {43:1--43:21},
year = {2017},
url = {https://doi.org/10.1186/s12918-017-0399-z},
doi = {10.1186/S12918-017-0399-Z},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcsb/BalomenosTATKM17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/BanerjeePBGPR17,
author = {Deepanwita Banerjee and
Dharmeshkumar Parmar and
Nivedita Bhattacharya and
Avinash D. Ghanate and
Venkateswarlu Panchagnula and
Anu Raghunathan},
title = {A scalable metabolite supplementation strategy against antibiotic
resistant pathogen Chromobacterium violaceum induced by {NAD+/NADH+}
imbalance},
journal = {{BMC} Syst. Biol.},
volume = {11},
number = {1},
pages = {51:1--51:20},
year = {2017},
url = {https://doi.org/10.1186/s12918-017-0427-z},
doi = {10.1186/S12918-017-0427-Z},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/BanerjeePBGPR17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/BassenVMBV17,
author = {David M. Bassen and
Michael Vilkhovoy and
Mason Minot and
Jonathan T. Butcher and
Jeffrey D. Varner},
title = {JuPOETs: a constrained multiobjective optimization approach to estimate
biochemical model ensembles in the Julia programming language},
journal = {{BMC} Syst. Biol.},
volume = {11},
number = {1},
pages = {10:1--10:11},
year = {2017},
url = {https://doi.org/10.1186/s12918-016-0380-2},
doi = {10.1186/S12918-016-0380-2},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/BassenVMBV17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/BotiaVFGDHLRW17,
author = {Juan A. Bot{\'{\i}}a and
Jana Vandrovcova and
Paola Forabosco and
Sebastian Guelfi and
Karishma D'Sa and
John Hardy and
Cathryn M. Lewis and
Mina Ryten and
Michael E. Weale},
title = {An additional k-means clustering step improves the biological features
of {WGCNA} gene co-expression networks},
journal = {{BMC} Syst. Biol.},
volume = {11},
number = {1},
pages = {47:1--47:16},
year = {2017},
url = {https://doi.org/10.1186/s12918-017-0420-6},
doi = {10.1186/S12918-017-0420-6},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/BotiaVFGDHLRW17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/BottjeKRWLH17,
author = {Walter Bottje and
Byung{-}Whi Kong and
Antonio Reverter and
Ashley J. Waardenberg and
Kentu Lassiter and
Nicholas J. Hudson},
title = {Progesterone signalling in broiler skeletal muscle is associated with
divergent feed efficiency},
journal = {{BMC} Syst. Biol.},
volume = {11},
number = {1},
pages = {29:1--29:16},
year = {2017},
url = {https://doi.org/10.1186/s12918-017-0396-2},
doi = {10.1186/S12918-017-0396-2},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/BottjeKRWLH17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/BourdakouS17,
author = {Marilena M. Bourdakou and
George M. Spyrou},
title = {Informed walks: whispering hints to gene hunters inside networks'
jungle},
journal = {{BMC} Syst. Biol.},
volume = {11},
number = {1},
pages = {97:1--97:11},
year = {2017},
url = {https://doi.org/10.1186/s12918-017-0473-6},
doi = {10.1186/S12918-017-0473-6},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/BourdakouS17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/ChenLH17,
author = {Weiqi Chen and
Jing Liu and
Shan He},
title = {Prior knowledge guided active modules identification: an integrated
multi-objective approach},
journal = {{BMC} Syst. Biol.},
volume = {11},
number = {{S-2}},
pages = {8:1--8:12},
year = {2017},
url = {https://doi.org/10.1186/s12918-017-0388-2},
doi = {10.1186/S12918-017-0388-2},
timestamp = {Thu, 25 Nov 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcsb/ChenLH17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/ChenLWC17,
author = {Minghan Chen and
Fei Li and
Shuo Wang and
Young Cao},
title = {Stochastic modeling and simulation of reaction-diffusion system with
Hill function dynamics},
journal = {{BMC} Syst. Biol.},
volume = {11},
number = {3},
pages = {21:1--21:11},
year = {2017},
url = {https://doi.org/10.1186/s12918-017-0401-9},
doi = {10.1186/S12918-017-0401-9},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/ChenLWC17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/ChenardGVCTN17,
author = {Thierry Ch{\'{e}}nard and
Fr{\'{e}}d{\'{e}}ric Gu{\'{e}}nard and
Marie{-}Claude Vohl and
Andr{\'{e}} Carpentier and
Andr{\'{e}} Tchernof and
Rafael J. Najmanovich},
title = {Remodeling adipose tissue through in silico modulation of fat storage
for the prevention of type 2 diabetes},
journal = {{BMC} Syst. Biol.},
volume = {11},
number = {1},
pages = {60:1--60:15},
year = {2017},
url = {https://doi.org/10.1186/s12918-017-0438-9},
doi = {10.1186/S12918-017-0438-9},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/ChenardGVCTN17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/ChengHWLGZ17,
author = {Zhanzhan Cheng and
Kai Huang and
Yang Wang and
Hui Liu and
Jihong Guan and
Shuigeng Zhou},
title = {Selecting high-quality negative samples for effectively predicting
protein-RNA interactions},
journal = {{BMC} Syst. Biol.},
volume = {11},
number = {{S-2}},
pages = {9:1--9:11},
year = {2017},
url = {https://doi.org/10.1186/s12918-017-0390-8},
doi = {10.1186/S12918-017-0390-8},
timestamp = {Mon, 26 Jun 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/ChengHWLGZ17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/ChoiPCLH17,
author = {Daesik Choi and
Byungkyu Park and
Hanju Chae and
Wook Lee and
Kyungsook Han},
title = {Predicting protein-binding regions in {RNA} using nucleotide profiles
and compositions},
journal = {{BMC} Syst. Biol.},
volume = {11},
number = {{S-2}},
pages = {16:1--16:12},
year = {2017},
url = {https://doi.org/10.1186/s12918-017-0386-4},
doi = {10.1186/S12918-017-0386-4},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/ChoiPCLH17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/ChuTSR17,
author = {Brian K. Chu and
Margaret J. Tse and
Royce R. Sato and
Elizabeth L. Read},
title = {Markov State Models of gene regulatory networks},
journal = {{BMC} Syst. Biol.},
volume = {11},
number = {1},
pages = {14:1--14:17},
year = {2017},
url = {https://doi.org/10.1186/s12918-017-0394-4},
doi = {10.1186/S12918-017-0394-4},
timestamp = {Sat, 05 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/ChuTSR17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/Cueto-RojasMHPM17,
author = {Hugo F. Cueto{-}Rojas and
Nicholas Milne and
Ward van Helmond and
Mervin M. Pieterse and
Antonius J. A. van Maris and
Jean{-}Marc Daran and
Sebastian Aljoscha Wahl},
title = {Membrane potential independent transport of {NH3} in the absence of
ammonium permeases in Saccharomyces cerevisiae},
journal = {{BMC} Syst. Biol.},
volume = {11},
number = {1},
pages = {49:1--49:13},
year = {2017},
url = {https://doi.org/10.1186/s12918-016-0381-1},
doi = {10.1186/S12918-016-0381-1},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/Cueto-RojasMHPM17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/DolomanVMF17,
author = {Anna Doloman and
Honey Varghese and
Charles D. Miller and
Nicholas S. Flann},
title = {Modeling de novo granulation of anaerobic sludge},
journal = {{BMC} Syst. Biol.},
volume = {11},
number = {1},
pages = {69:1--69:12},
year = {2017},
url = {https://doi.org/10.1186/s12918-017-0443-z},
doi = {10.1186/S12918-017-0443-Z},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/DolomanVMF17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/FuDJWY17,
author = {Changhe Fu and
Su Deng and
Guangxu Jin and
Xinxin Wang and
Zu{-}Guo Yu},
title = {Bayesian network model for identification of pathways by integrating
protein interaction with genetic interaction data},
journal = {{BMC} Syst. Biol.},
volume = {11},
number = {{S-4}},
pages = {35--42},
year = {2017},
url = {https://doi.org/10.1186/s12918-017-0454-9},
doi = {10.1186/S12918-017-0454-9},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/FuDJWY17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/GaborVB17,
author = {Attila G{\'{a}}bor and
Alejandro Fern{\'{a}}ndez Villaverde and
Julio R. Banga},
title = {Parameter identifiability analysis and visualization in large-scale
kinetic models of biosystems},
journal = {{BMC} Syst. Biol.},
volume = {11},
number = {1},
pages = {54:1--54:16},
year = {2017},
url = {https://doi.org/10.1186/s12918-017-0428-y},
doi = {10.1186/S12918-017-0428-Y},
timestamp = {Sat, 09 Apr 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/GaborVB17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/GanLZWJ17,
author = {Mingxin Gan and
Wenran Li and
Wanwen Zeng and
Xiaojian Wang and
Rui Jiang},
title = {Mimvec: a deep learning approach for analyzing the human phenome},
journal = {{BMC} Syst. Biol.},
volume = {11},
number = {{S-4}},
pages = {3--16},
year = {2017},
url = {https://doi.org/10.1186/s12918-017-0451-z},
doi = {10.1186/S12918-017-0451-Z},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/GanLZWJ17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/GaoWDZ17,
author = {Jie Gao and
Kang Wang and
Tao Ding and
Shanshan Zhu},
title = {Forecasting influenza {A} pandemic outbreak using protein dynamical
network biomarkers},
journal = {{BMC} Syst. Biol.},
volume = {11},
number = {{S-4}},
pages = {113--119},
year = {2017},
url = {https://doi.org/10.1186/s12918-017-0460-y},
doi = {10.1186/S12918-017-0460-Y},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/GaoWDZ17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/GlatignyGBDM17,
author = {Annie Glatigny and
Philippe Gambette and
Alexa Bourand{-}Plantefol and
Genevi{\`{e}}ve Dujardin and
Marie{-}H{\'{e}}l{\`{e}}ne Mucchielli{-}Giorgi},
title = {Development of an in silico method for the identification of subcomplexes
involved in the biogenesis of multiprotein complexes in Saccharomyces
cerevisiae},
journal = {{BMC} Syst. Biol.},
volume = {11},
number = {1},
pages = {67:1--67:12},
year = {2017},
url = {https://doi.org/10.1186/s12918-017-0442-0},
doi = {10.1186/S12918-017-0442-0},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/GlatignyGBDM17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/GuoCTLWBZ17,
author = {Wenbin Guo and
Cristiane P. G. Calixto and
Nikoleta Tzioutziou and
Ping Lin and
Robbie Waugh and
John W. S. Brown and
Runxuan Zhang},
title = {Evaluation and improvement of the regulatory inference for large co-expression
networks with limited sample size},
journal = {{BMC} Syst. Biol.},
volume = {11},
number = {1},
pages = {62:1--62:12},
year = {2017},
url = {https://doi.org/10.1186/s12918-017-0440-2},
doi = {10.1186/S12918-017-0440-2},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/GuoCTLWBZ17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/GuoTWW17,
author = {Yuzhen Guo and
Fengying Tao and
Zikai Wu and
Yong Wang},
title = {Hybrid method to solve {HP} model on 3D lattice and to probe protein
stability upon amino acid mutations},
journal = {{BMC} Syst. Biol.},
volume = {11},
number = {{S-4}},
pages = {99--111},
year = {2017},
url = {https://doi.org/10.1186/s12918-017-0459-4},
doi = {10.1186/S12918-017-0459-4},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/GuoTWW17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/HartungBWK17,
author = {Niklas Hartung and
Uwe Benary and
Jana Wolf and
Bente Kofahl},
title = {Paracrine and autocrine regulation of gene expression by Wnt-inhibitor
Dickkopf in wild-type and mutant hepatocytes},
journal = {{BMC} Syst. Biol.},
volume = {11},
number = {1},
pages = {98:1--98:16},
year = {2017},
url = {https://doi.org/10.1186/s12918-017-0470-9},
doi = {10.1186/S12918-017-0470-9},
timestamp = {Mon, 26 Jun 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/HartungBWK17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/HeZRC17,
author = {Jing He and
Zhou Zhou and
Michael Reed and
Andrea Califano},
title = {Accelerated parallel algorithm for gene network reverse engineering},
journal = {{BMC} Syst. Biol.},
volume = {11},
number = {{S-4}},
pages = {85--97},
year = {2017},
url = {https://doi.org/10.1186/s12918-017-0458-5},
doi = {10.1186/S12918-017-0458-5},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/HeZRC17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/HerajyLRH17,
author = {Mostafa Herajy and
Fei Liu and
Christian Rohr and
Monika Heiner},
title = {Snoopy's hybrid simulator: a tool to construct and simulate hybrid
biological models},
journal = {{BMC} Syst. Biol.},
volume = {11},
number = {1},
pages = {71:1--71:16},
year = {2017},
url = {https://doi.org/10.1186/s12918-017-0449-6},
doi = {10.1186/S12918-017-0449-6},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcsb/HerajyLRH17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/HoekM17,
author = {Milan J. A. van Hoek and
Roeland M. H. Merks},
title = {Emergence of microbial diversity due to cross-feeding interactions
in a spatial model of gut microbial metabolism},
journal = {{BMC} Syst. Biol.},
volume = {11},
number = {1},
pages = {56:1--56:18},
year = {2017},
url = {https://doi.org/10.1186/s12918-017-0430-4},
doi = {10.1186/S12918-017-0430-4},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/HoekM17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/HuangCJCLCLL17,
author = {Kai{-}Yao Huang and
Tzu{-}Hao Chang and
Jhih{-}Hua Jhong and
Yu{-}Hsiang Chi and
Wen{-}Chi Li and
Chien{-}Lung Chan and
K. Robert Lai and
Tzong{-}Yi Lee},
title = {Identification of natural antimicrobial peptides from bacteria through
metagenomic and metatranscriptomic analysis of high-throughput transcriptome
data of Taiwanese oolong teas},
journal = {{BMC} Syst. Biol.},
volume = {11},
number = {{S-7}},
pages = {29--44},
year = {2017},
url = {https://doi.org/10.1186/s12918-017-0503-4},
doi = {10.1186/S12918-017-0503-4},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/HuangCJCLCLL17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/HuhtinenHLLPS17,
author = {Anna Huhtinen and
Vesa Hongisto and
Asta Laiho and
Eliisa L{\"{o}}yttyniemi and
Dirk Pijnenburg and
Mika Scheinin},
title = {Gene expression profiles and signaling mechanisms in {\(\alpha\)}2B-adrenoceptor-evoked
proliferation of vascular smooth muscle cells},
journal = {{BMC} Syst. Biol.},
volume = {11},
number = {1},
pages = {65:1--65:30},
year = {2017},
url = {https://doi.org/10.1186/s12918-017-0439-8},
doi = {10.1186/S12918-017-0439-8},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/HuhtinenHLLPS17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/JayasundaraPMJ17,
author = {S. D. Pavithra Jayasundara and
S. S. N. Perera and
Gathsaurie Neelika Malavige and
Saroj Jayasinghe},
title = {Mathematical modelling and a systems science approach to describe
the role of cytokines in the evolution of severe dengue},
journal = {{BMC} Syst. Biol.},
volume = {11},
number = {1},
pages = {34:1--34:14},
year = {2017},
url = {https://doi.org/10.1186/s12918-017-0415-3},
doi = {10.1186/S12918-017-0415-3},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/JayasundaraPMJ17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/JenschTR17,
author = {Antje Jensch and
Caterina Thomaseth and
Nicole Radde},
title = {Sampling-based Bayesian approaches reveal the importance of quasi-bistable
behavior in cellular decision processes on the example of the {MAPK}
signaling pathway in {PC-12} cell lines},
journal = {{BMC} Syst. Biol.},
volume = {11},
number = {1},
pages = {11:1--11:15},
year = {2017},
url = {https://doi.org/10.1186/s12918-017-0392-6},
doi = {10.1186/S12918-017-0392-6},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/JenschTR17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/JeongY17,
author = {Hyundoo Jeong and
Byung{-}Jun Yoon},
title = {{SEQUOIA:} significance enhanced network querying through context-sensitive
random walk and minimization of network conductance},
journal = {{BMC} Syst. Biol.},
volume = {11},
number = {3},
pages = {20:1--20:11},
year = {2017},
url = {https://doi.org/10.1186/s12918-017-0404-6},
doi = {10.1186/S12918-017-0404-6},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/JeongY17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/JiWYDMS17,
author = {Zhiwei Ji and
Bing Wang and
Ke Yan and
Ligang Dong and
Guanmin Meng and
Lei Shi},
title = {A linear programming computational framework integrates phosphor-proteomics
and prior knowledge to predict drug efficacy},
journal = {{BMC} Syst. Biol.},
volume = {11},
number = {{S-7}},
pages = {127:1--127:13},
year = {2017},
url = {https://doi.org/10.1186/s12918-017-0501-6},
doi = {10.1186/S12918-017-0501-6},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/JiWYDMS17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/JiangCCHY17,
author = {Hao Jiang and
Wai{-}Ki Ching and
Wai{-}Shun Cheung and
Wenpin Hou and
Hong Yin},
title = {Hadamard Kernel {SVM} with applications for breast cancer outcome
predictions},
journal = {{BMC} Syst. Biol.},
volume = {11},
number = {{S-7}},
pages = {163--174},
year = {2017},
url = {https://doi.org/10.1186/s12918-017-0514-1},
doi = {10.1186/S12918-017-0514-1},
timestamp = {Sun, 12 Nov 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcsb/JiangCCHY17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/JiangCQC17,
author = {Hao Jiang and
Wai{-}Ki Ching and
Yushan Qiu and
Xiaoqing Cheng},
title = {Optimal projection method determination by Logdet Divergence and perturbed
von-Neumann Divergence},
journal = {{BMC} Syst. Biol.},
volume = {11},
number = {6},
pages = {45--61},
year = {2017},
url = {https://doi.org/10.1186/s12918-017-0479-0},
doi = {10.1186/S12918-017-0479-0},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/JiangCQC17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/KangC17,
author = {Jun Hyuk Kang and
Kwang{-}Hyun Cho},
title = {A novel interaction perturbation analysis reveals a comprehensive
regulatory principle underlying various biochemical oscillators},
journal = {{BMC} Syst. Biol.},
volume = {11},
number = {1},
pages = {95:1--95:12},
year = {2017},
url = {https://doi.org/10.1186/s12918-017-0472-7},
doi = {10.1186/S12918-017-0472-7},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/KangC17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/KaoWHKHHL17,
author = {Hui{-}Ju Kao and
Shun{-}Long Weng and
Kai{-}Yao Huang and
Fergie Joanda Kaunang and
Justin Bo{-}Kai Hsu and
Chien{-}Hsun Huang and
Tzong{-}Yi Lee},
title = {MDD-carb: a combinatorial model for the identification of protein
carbonylation sites with substrate motifs},
journal = {{BMC} Syst. Biol.},
volume = {11},
number = {{S-7}},
pages = {127--140},
year = {2017},
url = {https://doi.org/10.1186/s12918-017-0511-4},
doi = {10.1186/S12918-017-0511-4},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/KaoWHKHHL17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/KapetisSYGXWSLF17,
author = {Dimos Kapetis and
Jenny Sassone and
Yang Yang and
Barbara Galbardi and
Markos N. Xenakis and
Ronald L. Westra and
Radek Szklarczyk and
Patrick Lindsey and
Catharina G. Faber and
Monique Gerrits and
Ingemar S. J. Merkies and
Sulayman D. Dib{-}Hajj and
Massimo Mantegazza and
Stephen G. Waxman and
Giuseppe Lauria and
Michela Taiana and
Margherita Marchi and
Raffaella Lombardi and
Daniele Cazzato and
Filippo Martinelli{-}Boneschi and
Andrea Zauli and
Ferdinando Clarelli and
Silvia Santoro and
Ignazio Lopez and
Angelo Quattrini and
Janneke Hoeijmakers and
Maurice Sopacua and
Bianca de Greef and
Hubert J. M. Smeets and
Rowida Al Momani and
Jo Michel Vanoevelen and
Ivo Eijkenboom and
Sandrine Cest{\`{e}}le and
Oana Chever and
Rayaz A. Malik and
Mitra Tavakoli and
Dan Ziegler},
title = {Network topology of NaV1.7 mutations in sodium channel-related painful
disorders},
journal = {{BMC} Syst. Biol.},
volume = {11},
number = {1},
pages = {28:1--28:16},
year = {2017},
url = {https://doi.org/10.1186/s12918-016-0382-0},
doi = {10.1186/S12918-016-0382-0},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/KapetisSYGXWSLF17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/KashafAL17,
author = {Sara Saheb Kashaf and
Claudio Angione and
Pietro Li{\`{o}}},
title = {Making life difficult for Clostridium difficile: augmenting the pathogen's
metabolic model with transcriptomic and codon usage data for better
therapeutic target characterization},
journal = {{BMC} Syst. Biol.},
volume = {11},
number = {1},
pages = {25:1--25:13},
year = {2017},
url = {https://doi.org/10.1186/s12918-017-0395-3},
doi = {10.1186/S12918-017-0395-3},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/KashafAL17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/KhatibiZWTMB17,
author = {Shabnam Khatibi and
Hong{-}Jian Zhu and
John Wagner and
Chin Wee Tan and
Jonathan H. Manton and
Antony W. Burgess},
title = {Mathematical model of TGF-{\(\beta\)}signalling: feedback coupling
is consistent with signal switching},
journal = {{BMC} Syst. Biol.},
volume = {11},
number = {1},
pages = {48:1--48:15},
year = {2017},
url = {https://doi.org/10.1186/s12918-017-0421-5},
doi = {10.1186/S12918-017-0421-5},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/KhatibiZWTMB17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/KimCSC17,
author = {Yunseong Kim and
Sea Choi and
Dongkwan Shin and
Kwang{-}Hyun Cho},
title = {Quantitative evaluation and reversion analysis of the attractor landscapes
of an intracellular regulatory network for colorectal cancer},
journal = {{BMC} Syst. Biol.},
volume = {11},
number = {1},
pages = {45:1--45:11},
year = {2017},
url = {https://doi.org/10.1186/s12918-017-0424-2},
doi = {10.1186/S12918-017-0424-2},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/KimCSC17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/KuglerBE17,
author = {Philipp K{\"{u}}gler and
M. A. K. Bulelzai and
Andr{\'{e}} H. Erhardt},
title = {Period doubling cascades of limit cycles in cardiac action potential
models as precursors to chaotic early Afterdepolarizations},
journal = {{BMC} Syst. Biol.},
volume = {11},
number = {1},
pages = {42:1--42:13},
year = {2017},
url = {https://doi.org/10.1186/s12918-017-0422-4},
doi = {10.1186/S12918-017-0422-4},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/KuglerBE17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/KuzmanovskaMMZK17,
author = {Irena Kuzmanovska and
Andreas Milias{-}Argeitis and
Jan Mikelson and
Christoph Zechner and
Mustafa Khammash},
title = {Parameter inference for stochastic single-cell dynamics from lineage
tree data},
journal = {{BMC} Syst. Biol.},
volume = {11},
number = {1},
pages = {52:1--52:13},
year = {2017},
url = {https://doi.org/10.1186/s12918-017-0425-1},
doi = {10.1186/S12918-017-0425-1},
timestamp = {Mon, 26 Jun 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/KuzmanovskaMMZK17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/LabenaYDZG17,
author = {Abraham A. Labena and
Yuan{-}Nong Ye and
Chuan Dong and
Fa{-}Zhan Zhang and
Feng{-}Biao Guo},
title = {{SSER:} Species specific essential reactions database},
journal = {{BMC} Syst. Biol.},
volume = {11},
number = {1},
pages = {50:1--50:8},
year = {2017},
url = {https://doi.org/10.1186/s12918-017-0426-0},
doi = {10.1186/S12918-017-0426-0},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/LabenaYDZG17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/LaiF17,
author = {Xiulan Lai and
Avner Friedman},
title = {Combination therapy for melanoma with {BRAF/MEK} inhibitor and immune
checkpoint inhibitor: a mathematical model},
journal = {{BMC} Syst. Biol.},
volume = {11},
number = {1},
pages = {70:1--70:18},
year = {2017},
url = {https://doi.org/10.1186/s12918-017-0446-9},
doi = {10.1186/S12918-017-0446-9},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/LaiF17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/LeP17,
author = {Duc{-}Hau Le and
Van{-}Huy Pham},
title = {{HGPEC:} a Cytoscape app for prediction of novel disease-gene and
disease-disease associations and evidence collection based on a random
walk on heterogeneous network},
journal = {{BMC} Syst. Biol.},
volume = {11},
number = {1},
pages = {61:1--61:10},
year = {2017},
url = {https://doi.org/10.1186/s12918-017-0437-x},
doi = {10.1186/S12918-017-0437-X},
timestamp = {Mon, 05 Oct 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/LeP17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/LiG17,
author = {Qi Li and
Yongyi Gong},
title = {A geometric method for contour extraction of Drosophila embryos},
journal = {{BMC} Syst. Biol.},
volume = {11},
number = {6},
pages = {35--44},
year = {2017},
url = {https://doi.org/10.1186/s12918-017-0478-1},
doi = {10.1186/S12918-017-0478-1},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/LiG17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/LiSDSLKM17,
author = {Biao Li and
Amanda Sierra and
Juan Jose Deudero and
Fatih Semerci and
Andrew Laitman and
Marek Kimmel and
Mirjana Maletic{-}Savatic},
title = {Multitype Bellman-Harris branching model provides biological predictors
of early stages of adult hippocampal neurogenesis},
journal = {{BMC} Syst. Biol.},
volume = {11},
number = {{S-5}},
pages = {90:1--90:16},
year = {2017},
url = {https://doi.org/10.1186/s12918-017-0468-3},
doi = {10.1186/S12918-017-0468-3},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/LiSDSLKM17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/LiVNWYT17,
author = {Huipeng Li and
Lakshmi Venkatraman and
Balakrishnan Chakrapani Narmada and
Jacob K. White and
Hanry Yu and
Lisa Tucker{-}Kellogg},
title = {Computational analysis reveals the coupling between bistability and
the sign of a feedback loop in a TGF-{\(\beta\)}1 activation model},
journal = {{BMC} Syst. Biol.},
volume = {11},
number = {{S-7}},
pages = {91--99},
year = {2017},
url = {https://doi.org/10.1186/s12918-017-0508-z},
doi = {10.1186/S12918-017-0508-Z},
timestamp = {Mon, 08 May 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/LiVNWYT17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/LiWCLCLL17,
author = {Ru{-}Dong Li and
Yin Wang and
Hui Cheng and
Gang Liu and
Tao Cheng and
Yunlong Liu and
Lei Liu},
title = {System modeling reveals the molecular mechanisms of {HSC} cell cycle
alteration mediated by Maff and Egr3 under leukemia},
journal = {{BMC} Syst. Biol.},
volume = {11},
number = {{S-5}},
pages = {91:1--91:12},
year = {2017},
url = {https://doi.org/10.1186/s12918-017-0467-4},
doi = {10.1186/S12918-017-0467-4},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/LiWCLCLL17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/LiWRWFLL17,
author = {Jin Li and
Yang Wang and
Xi Rao and
Yue Wang and
Weixing Feng and
Hong Liang and
Yunlong Liu},
title = {Roles of alternative splicing in modulating transcriptional regulation},
journal = {{BMC} Syst. Biol.},
volume = {11},
number = {{S-5}},
pages = {89:1--89:12},
year = {2017},
url = {https://doi.org/10.1186/s12918-017-0465-6},
doi = {10.1186/S12918-017-0465-6},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/LiWRWFLL17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/LiuGJ17,
author = {Qiao Liu and
Mingxin Gan and
Rui Jiang},
title = {A sequence-based method to predict the impact of regulatory variants
using random forest},
journal = {{BMC} Syst. Biol.},
volume = {11},
number = {{S-2}},
pages = {7:1--7:9},
year = {2017},
url = {https://doi.org/10.1186/s12918-017-0389-1},
doi = {10.1186/S12918-017-0389-1},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcsb/LiuGJ17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/LiuSMM17,
author = {Fei Liu and
Deshun Sun and
Ryutaro Murakami and
Hiroshi Matsuno},
title = {Modeling and analysis of the Delta-Notch dependent boundary formation
in the Drosophila large intestine},
journal = {{BMC} Syst. Biol.},
volume = {11},
number = {{S-4}},
pages = {43--60},
year = {2017},
url = {https://doi.org/10.1186/s12918-017-0455-8},
doi = {10.1186/S12918-017-0455-8},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/LiuSMM17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/LiuWZGWS17,
author = {Jin{-}Xing Liu and
Dong{-}Qin Wang and
Chun{-}Hou Zheng and
Ying{-}Lian Gao and
Sha{-}Sha Wu and
Junliang Shang},
title = {Identifying drug-pathway association pairs based on L2, 1-integrative
penalized matrix decomposition},
journal = {{BMC} Syst. Biol.},
volume = {11},
number = {6},
pages = {63--73},
year = {2017},
url = {https://doi.org/10.1186/s12918-017-0480-7},
doi = {10.1186/S12918-017-0480-7},
timestamp = {Sat, 13 Jun 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/LiuWZGWS17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/LiuWZH17,
author = {Qingping Liu and
Jiahao Wang and
Yan Zhu and
Yongqun He},
title = {Ontology-based systematic representation and analysis of traditional
Chinese drugs against rheumatism},
journal = {{BMC} Syst. Biol.},
volume = {11},
number = {{S-7}},
pages = {113--125},
year = {2017},
url = {https://doi.org/10.1186/s12918-017-0510-5},
doi = {10.1186/S12918-017-0510-5},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/LiuWZH17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/LiuYLSL17,
author = {Xiaoxia Liu and
Zhihao Yang and
Hongfei Lin and
Michael Simmons and
Zhiyong Lu},
title = {DIGNiFI: Discovering causative genes for orphan diseases using protein-protein
interaction networks},
journal = {{BMC} Syst. Biol.},
volume = {11},
number = {3},
pages = {23:1--23:11},
year = {2017},
url = {https://doi.org/10.1186/s12918-017-0402-8},
doi = {10.1186/S12918-017-0402-8},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/LiuYLSL17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/LoiraMCRTGGEM17,
author = {Nicol{\'{a}}s Loira and
Sebasti{\'{a}}n N. Mendoza and
Mar{\'{\i}}a Paz Cort{\'{e}}s and
Natalia Rojas and
Dante Travisany and
Alex Di G{\'{e}}nova and
Natalia Gajardo and
Nicole Ehrenfeld and
Alejandro Maass},
title = {Reconstruction of the microalga Nannochloropsis salina genome-scale
metabolic model with applications to lipid production},
journal = {{BMC} Syst. Biol.},
volume = {11},
number = {1},
pages = {66:1--66:17},
year = {2017},
url = {https://doi.org/10.1186/s12918-017-0441-1},
doi = {10.1186/S12918-017-0441-1},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/LoiraMCRTGGEM17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/LundKBPKKA17,
author = {Anne Mathilde Lund and
Christian Schr{\o}der Kaas and
Julian Brandl and
Lasse Ebdrup Pedersen and
Helene Faustrup Kildegaard and
Claus Kristensen and
Mikael R{\o}rdam Andersen},
title = {Network reconstruction of the mouse secretory pathway applied on {CHO}
cell transcriptome data},
journal = {{BMC} Syst. Biol.},
volume = {11},
number = {1},
pages = {37:1--37:17},
year = {2017},
url = {https://doi.org/10.1186/s12918-017-0414-4},
doi = {10.1186/S12918-017-0414-4},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/LundKBPKKA17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/MaZ17,
author = {Lichun Ma and
Jie Zheng},
title = {A polynomial based model for cell fate prediction in human diseases},
journal = {{BMC} Syst. Biol.},
volume = {11},
number = {{S-7}},
pages = {15--27},
year = {2017},
url = {https://doi.org/10.1186/s12918-017-0502-5},
doi = {10.1186/S12918-017-0502-5},
timestamp = {Thu, 02 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcsb/MaZ17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/MallCBIC17,
author = {Raghvendra Mall and
Luigi Cerulo and
Halima Bensmail and
Antonio Iavarone and
Michele Ceccarelli},
title = {Detection of statistically significant network changes in complex
biological networks},
journal = {{BMC} Syst. Biol.},
volume = {11},
number = {1},
pages = {32:1--32:17},
year = {2017},
url = {https://doi.org/10.1186/s12918-017-0412-6},
doi = {10.1186/S12918-017-0412-6},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcsb/MallCBIC17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/Martinez-Sanchez17,
author = {Mariana Esther Martinez{-}Sanchez and
Marcia Hiriart and
Elena R. {\'{A}}lvarez{-}Buylla},
title = {The {CD4+} {T} cell regulatory network mediates inflammatory responses
during acute hyperinsulinemia: a simulation study},
journal = {{BMC} Syst. Biol.},
volume = {11},
number = {1},
pages = {64:1--64:12},
year = {2017},
url = {https://doi.org/10.1186/s12918-017-0436-y},
doi = {10.1186/S12918-017-0436-Y},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/Martinez-Sanchez17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/MazayaTK17,
author = {Maulida Mazaya and
Hung{-}Cuong Trinh and
Yung{-}Keun Kwon},
title = {Construction and analysis of gene-gene dynamics influence networks
based on a Boolean model},
journal = {{BMC} Syst. Biol.},
volume = {11},
number = {{S-7}},
pages = {101--111},
year = {2017},
url = {https://doi.org/10.1186/s12918-017-0509-y},
doi = {10.1186/S12918-017-0509-Y},
timestamp = {Mon, 05 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcsb/MazayaTK17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/Mendez-LopezDDE17,
author = {Luis Fernando M{\'{e}}ndez{-}L{\'{o}}pez and
Jose Davila{-}Velderrain and
Elisa Dom{\'{\i}}nguez{-}H{\"{u}}ttinger and
Christian Enr{\'{\i}}quez{-}Olgu{\'{\i}}n and
Juan Carlos Mart{\'{\i}}nez{-}Garc{\'{\i}}a and
Elena R. {\'{A}}lvarez{-}Buylla},
title = {Gene regulatory network underlying the immortalization of epithelial
cells},
journal = {{BMC} Syst. Biol.},
volume = {11},
number = {1},
pages = {24:1--24:15},
year = {2017},
url = {https://doi.org/10.1186/s12918-017-0393-5},
doi = {10.1186/S12918-017-0393-5},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/Mendez-LopezDDE17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/MoonLJLSK17,
author = {Ji Hwan Moon and
Sangsoo Lim and
Kyuri Jo and
Sangseon Lee and
Seokjun Seo and
Sun Kim},
title = {PINTnet: construction of condition-specific pathway interaction network
by computing shortest paths on weighted {PPI}},
journal = {{BMC} Syst. Biol.},
volume = {11},
number = {{S-2}},
pages = {15:1--15:13},
year = {2017},
url = {https://doi.org/10.1186/s12918-017-0387-3},
doi = {10.1186/S12918-017-0387-3},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/MoonLJLSK17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/NortonWPP17,
author = {Kerri{-}Ann Norton and
Travis Wallace and
Niranjan B. Pandey and
Aleksander S. Popel},
title = {An agent-based model of triple-negative breast cancer: the interplay
between chemokine receptor {CCR5} expression, cancer stem cells, and
hypoxia},
journal = {{BMC} Syst. Biol.},
volume = {11},
number = {1},
pages = {68:1--68:15},
year = {2017},
url = {https://doi.org/10.1186/s12918-017-0445-x},
doi = {10.1186/S12918-017-0445-X},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/NortonWPP17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/OguzWBT17,
author = {Cihan Oguz and
Layne T. Watson and
William T. Baumann and
John J. Tyson},
title = {Predicting network modules of cell cycle regulators using relative
protein abundance statistics},
journal = {{BMC} Syst. Biol.},
volume = {11},
number = {1},
pages = {30:1--30:24},
year = {2017},
url = {https://doi.org/10.1186/s12918-017-0409-1},
doi = {10.1186/S12918-017-0409-1},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/OguzWBT17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/OmelyanchukM17,
author = {Leonid V. Omelyanchuk and
Alina F. Munzarova},
title = {Theoretical model of mitotic spindle microtubule growth for {FRAP}
curve interpretation},
journal = {{BMC} Syst. Biol.},
volume = {11},
number = {{S-1}},
pages = {17--26},
year = {2017},
url = {https://doi.org/10.1186/s12918-016-0378-9},
doi = {10.1186/S12918-016-0378-9},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/OmelyanchukM17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/PapadopoulosCNB17,
author = {Theofilos Papadopoulos and
Audrey Casemayou and
Eric Neau and
Benjamin Breuil and
C{\'{e}}cile Caubet and
Denis Calise and
Barbara A. Thornhill and
Magdalena Bachvarova and
Julie Belliere and
Robert L. Chevalier and
Panagiotis Moulos and
Dimcho Bachvarov and
Benedicte Buffin{-}Meyer and
St{\'{e}}phane Decramer and
Fran{\c{c}}oise Conte Auriol and
Jean{-}Loup Bascands and
Joost P. Schanstra and
Julie Klein},
title = {Systems biology combining human- and animal-data miRNA and mRNA data
identifies new targets in ureteropelvic junction obstruction},
journal = {{BMC} Syst. Biol.},
volume = {11},
number = {1},
pages = {31:1--31:11},
year = {2017},
url = {https://doi.org/10.1186/s12918-017-0411-7},
doi = {10.1186/S12918-017-0411-7},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/PapadopoulosCNB17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/ParkYRLLYP17,
author = {Chihyun Park and
So Jeong Yun and
Sung Jin Ryu and
Soyoung Lee and
Young Sam Lee and
Youngmi Yoon and
Sang{-}Chul Park},
title = {Systematic identification of an integrative network module during
senescence from time-series gene expression},
journal = {{BMC} Syst. Biol.},
volume = {11},
number = {1},
pages = {36:1--36:13},
year = {2017},
url = {https://doi.org/10.1186/s12918-017-0417-1},
doi = {10.1186/S12918-017-0417-1},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/ParkYRLLYP17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/ParmarDSM17,
author = {Jignesh H. Parmar and
Grey Davis and
Hope Shevchuk and
Pedro Mendes},
title = {Modeling the dynamics of mouse iron body distribution: hepcidin is
necessary but not sufficient},
journal = {{BMC} Syst. Biol.},
volume = {11},
number = {1},
pages = {57:1--57:13},
year = {2017},
url = {https://doi.org/10.1186/s12918-017-0431-3},
doi = {10.1186/S12918-017-0431-3},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/ParmarDSM17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/PengLMWZN17,
author = {Tao Peng and
Linan Liu and
Adam L. Maclean and
Chi Wut Wong and
Weian Zhao and
Qing Nie},
title = {A mathematical model of mechanotransduction reveals how mechanical
memory regulates mesenchymal stem cell fate decisions},
journal = {{BMC} Syst. Biol.},
volume = {11},
number = {1},
pages = {55:1--55:15},
year = {2017},
url = {https://doi.org/10.1186/s12918-017-0429-x},
doi = {10.1186/S12918-017-0429-X},
timestamp = {Thu, 23 Dec 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcsb/PengLMWZN17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/PezzeN17,
author = {Piero Dalle Pezze and
Nicolas Le Nov{\`{e}}re},
title = {SBpipe: a collection of pipelines for automating repetitive simulation
and analysis tasks},
journal = {{BMC} Syst. Biol.},
volume = {11},
number = {1},
pages = {46:1--46:5},
year = {2017},
url = {https://doi.org/10.1186/s12918-017-0423-3},
doi = {10.1186/S12918-017-0423-3},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/PezzeN17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/PodkolodnayaTP17,
author = {Olga A. Podkolodnaya and
Natalya N. Tverdokhleb and
Nikolay Podkolodnyy},
title = {Computational modeling of the cell-autonomous mammalian circadian
oscillator},
journal = {{BMC} Syst. Biol.},
volume = {11},
number = {{S-1}},
pages = {27--42},
year = {2017},
url = {https://doi.org/10.1186/s12918-016-0379-8},
doi = {10.1186/S12918-016-0379-8},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/PodkolodnayaTP17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/RodicBZDD17,
author = {Andjela Rodic and
Bojana Blagojevic and
Evgeny M. Zdobnov and
Magdalena Djordjevic and
Marko Djordjevic},
title = {Understanding key features of bacterial restriction-modification systems
through quantitative modeling},
journal = {{BMC} Syst. Biol.},
volume = {11},
number = {{S-1}},
pages = {1--15},
year = {2017},
url = {https://doi.org/10.1186/s12918-016-0377-x},
doi = {10.1186/S12918-016-0377-X},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcsb/RodicBZDD17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/RowlandPM17,
author = {Michael A. Rowland and
Edward J. Perkins and
Michael L. Mayo},
title = {Physiological fidelity or model parsimony? The relative performance
of reverse-toxicokinetic modeling approaches},
journal = {{BMC} Syst. Biol.},
volume = {11},
number = {1},
pages = {35:1--35:11},
year = {2017},
url = {https://doi.org/10.1186/s12918-017-0407-3},
doi = {10.1186/S12918-017-0407-3},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/RowlandPM17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/RoyRS17,
author = {Ranjita Dutta Roy and
Christian Rosenmund and
Melanie I. Stefan},
title = {Cooperative binding mitigates the high-dose hook effect},
journal = {{BMC} Syst. Biol.},
volume = {11},
number = {1},
pages = {74:1--74:10},
year = {2017},
url = {https://doi.org/10.1186/s12918-017-0447-8},
doi = {10.1186/S12918-017-0447-8},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/RoyRS17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/RuffaloSPVB17,
author = {Matthew Ruffalo and
Petar Stojanov and
Venkata Krishna Pillutla and
Rohan Varma and
Ziv Bar{-}Joseph},
title = {Reconstructing cancer drug response networks using multitask learning},
journal = {{BMC} Syst. Biol.},
volume = {11},
number = {1},
pages = {96:1--96:15},
year = {2017},
url = {https://doi.org/10.1186/s12918-017-0471-8},
doi = {10.1186/S12918-017-0471-8},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/RuffaloSPVB17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/SaituaTPA17,
author = {Francisco Saitua and
Paulina Torres and
Jose Ricardo P{\'{e}}rez{-}Correa and
Eduardo Agosin},
title = {Dynamic genome-scale metabolic modeling of the yeast Pichia pastoris},
journal = {{BMC} Syst. Biol.},
volume = {11},
number = {1},
pages = {27:1--27:21},
year = {2017},
url = {https://doi.org/10.1186/s12918-017-0408-2},
doi = {10.1186/S12918-017-0408-2},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcsb/SaituaTPA17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/SarkerPNKUR17,
author = {Joyatee M. Sarker and
Serena M. Pearce and
Robert P. Nelson Jr. and
Tamara Kinzer{-}Ursem and
David M. Umulis and
Ann E. Rundell},
title = {An Integrative multi-lineage model of variation in leukopoiesis and
acute myelogenous leukemia},
journal = {{BMC} Syst. Biol.},
volume = {11},
number = {1},
pages = {78:1--78:18},
year = {2017},
url = {https://doi.org/10.1186/s12918-017-0469-2},
doi = {10.1186/S12918-017-0469-2},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/SarkerPNKUR17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/Serrano-Bermudez17,
author = {Luis Miguel Serrano{-}Berm{\'{u}}dez and
Andr{\'{e}}s Fernando Gonz{\'{a}}lez Barrios and
Costas D. Maranas and
Dolly Montoya Casta{\~{n}}o},
title = {Clostridium butyricum maximizes growth while minimizing enzyme usage
and {ATP} production: metabolic flux distribution of a strain cultured
in glycerol},
journal = {{BMC} Syst. Biol.},
volume = {11},
number = {1},
pages = {58:1--58:13},
year = {2017},
url = {https://doi.org/10.1186/s12918-017-0434-0},
doi = {10.1186/S12918-017-0434-0},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/Serrano-Bermudez17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/ShiW17,
author = {Xiaofei Shi and
Ruiqi Wang},
title = {Glioma cell fate decisions mediated by Dll1-Jag1-Fringe in Notch1
signaling pathway},
journal = {{BMC} Syst. Biol.},
volume = {11},
number = {{S-4}},
pages = {75--84},
year = {2017},
url = {https://doi.org/10.1186/s12918-017-0457-6},
doi = {10.1186/S12918-017-0457-6},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/ShiW17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/SimpsonLS17,
author = {Matthew J. Simpson and
Kai{-}Yin Lo and
Yung{-}Shin Sun},
title = {Quantifying the roles of random motility and directed motility using
advection-diffusion theory for a 3T3 fibroblast cell migration assay
stimulated with an electric field},
journal = {{BMC} Syst. Biol.},
volume = {11},
number = {1},
pages = {39:1--39:9},
year = {2017},
url = {https://doi.org/10.1186/s12918-017-0413-5},
doi = {10.1186/S12918-017-0413-5},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/SimpsonLS17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/SnowdenGT17,
author = {Thomas J. Snowden and
Piet H. Van Der Graaf and
Marcus J. Tindall},
title = {A combined model reduction algorithm for controlled biochemical systems},
journal = {{BMC} Syst. Biol.},
volume = {11},
number = {1},
pages = {17:1--17:18},
year = {2017},
url = {https://doi.org/10.1186/s12918-017-0397-1},
doi = {10.1186/S12918-017-0397-1},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/SnowdenGT17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/SuWHHCL17,
author = {Min{-}Gang Su and
Julia Tzu{-}Ya Weng and
Justin Bo{-}Kai Hsu and
Kai{-}Yao Huang and
Yu{-}Hsiang Chi and
Tzong{-}Yi Lee},
title = {Investigation and identification of functional post-translational
modification sites associated with drug binding and protein-protein
interactions},
journal = {{BMC} Syst. Biol.},
volume = {11},
number = {{S-7}},
pages = {69--80},
year = {2017},
url = {https://doi.org/10.1186/s12918-017-0506-1},
doi = {10.1186/S12918-017-0506-1},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/SuWHHCL17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/SunLZW17,
author = {Duanchen Sun and
Yinliang Liu and
Xiang{-}Sun Zhang and
Ling{-}Yun Wu},
title = {NetGen: a novel network-based probabilistic generative model for gene
set functional enrichment analysis},
journal = {{BMC} Syst. Biol.},
volume = {11},
number = {{S-4}},
pages = {61--74},
year = {2017},
url = {https://doi.org/10.1186/s12918-017-0456-7},
doi = {10.1186/S12918-017-0456-7},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/SunLZW17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/SunWZWLX17,
author = {Jingchun Sun and
Qiang Wei and
Yubo Zhou and
Jingqi Wang and
Qi Liu and
Hua Xu},
title = {A systematic analysis of FDA-approved anticancer drugs},
journal = {{BMC} Syst. Biol.},
volume = {11},
number = {{S-5}},
pages = {87:1--87:17},
year = {2017},
url = {https://doi.org/10.1186/s12918-017-0464-7},
doi = {10.1186/S12918-017-0464-7},
timestamp = {Thu, 19 May 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/SunWZWLX17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/TianZGH17,
author = {Bo Tian and
Can Zhao and
Feiyang Gu and
Zengyou He},
title = {A two-step framework for inferring direct protein-protein interaction
network from {AP-MS} data},
journal = {{BMC} Syst. Biol.},
volume = {11},
number = {{S-4}},
pages = {17--25},
year = {2017},
url = {https://doi.org/10.1186/s12918-017-0452-y},
doi = {10.1186/S12918-017-0452-Y},
timestamp = {Thu, 28 Mar 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcsb/TianZGH17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/Trejo-BanosTE17,
author = {Daniel Trejo{-}Ba{\~{n}}os and
Pauline Tr{\'{e}}bulle and
Mohamed Elati},
title = {Integrating transcriptional activity in genome-scale models of metabolism},
journal = {{BMC} Syst. Biol.},
volume = {11},
number = {{S-7}},
pages = {81--90},
year = {2017},
url = {https://doi.org/10.1186/s12918-017-0507-0},
doi = {10.1186/S12918-017-0507-0},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/Trejo-BanosTE17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/TrescherML17,
author = {Saskia Trescher and
Jannes M{\"{u}}nchmeyer and
Ulf Leser},
title = {Estimating genome-wide regulatory activity from multi-omics data sets
using mathematical optimization},
journal = {{BMC} Syst. Biol.},
volume = {11},
number = {1},
pages = {41:1--41:18},
year = {2017},
url = {https://doi.org/10.1186/s12918-017-0419-z},
doi = {10.1186/S12918-017-0419-Z},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcsb/TrescherML17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/TruongK17,
author = {Cong{-}Doan Truong and
Yung{-}Keun Kwon},
title = {Investigation on changes of modularity and robustness by edge-removal
mutations in signaling networks},
journal = {{BMC} Syst. Biol.},
volume = {11},
number = {{S-7}},
pages = {57--68},
year = {2017},
url = {https://doi.org/10.1186/s12918-017-0505-2},
doi = {10.1186/S12918-017-0505-2},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/TruongK17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/Tsuruyama17,
author = {Tatsuaki Tsuruyama},
title = {Kinetic stability analysis of protein assembly on the center manifold
around the critical point},
journal = {{BMC} Syst. Biol.},
volume = {11},
number = {1},
pages = {13:1--13:9},
year = {2017},
url = {https://doi.org/10.1186/s12918-017-0391-7},
doi = {10.1186/S12918-017-0391-7},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/Tsuruyama17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/TurkiW17,
author = {Turki Turki and
Zhi Wei},
title = {A link prediction approach to cancer drug sensitivity prediction},
journal = {{BMC} Syst. Biol.},
volume = {11},
number = {{S-5}},
pages = {94:1--94:14},
year = {2017},
url = {https://doi.org/10.1186/s12918-017-0463-8},
doi = {10.1186/S12918-017-0463-8},
timestamp = {Thu, 28 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/TurkiW17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/WangM17,
author = {Yulin Wang and
Hongyu Miao},
title = {Parameter identifiability-based optimal observation remedy for biological
networks},
journal = {{BMC} Syst. Biol.},
volume = {11},
number = {1},
pages = {53:1--53:13},
year = {2017},
url = {https://doi.org/10.1186/s12918-017-0432-2},
doi = {10.1186/S12918-017-0432-2},
timestamp = {Tue, 09 Feb 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcsb/WangM17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/WangQ17,
author = {Yijie Wang and
Xiaoning Qian},
title = {Finding low-conductance sets with dense interactions {(FLCD)} for
better protein complex prediction},
journal = {{BMC} Syst. Biol.},
volume = {11},
number = {3},
pages = {22:1--22:11},
year = {2017},
url = {https://doi.org/10.1186/s12918-017-0405-5},
doi = {10.1186/S12918-017-0405-5},
timestamp = {Mon, 01 Mar 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcsb/WangQ17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/WangZC17,
author = {Yong Wang and
Xiang{-}Sun Zhang and
Luonan Chen},
title = {Understanding biological systems through the lens of data},
journal = {{BMC} Syst. Biol.},
volume = {11},
number = {{S-4}},
pages = {77:1--77:2},
year = {2017},
url = {https://doi.org/10.1186/s12918-017-0450-0},
doi = {10.1186/S12918-017-0450-0},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/WangZC17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/WeiGNL17,
author = {Ou Wei and
Zonghao Guo and
Yun Niu and
Wenyuan Liao},
title = {Model checking optimal finite-horizon control for probabilistic gene
regulatory networks},
journal = {{BMC} Syst. Biol.},
volume = {11},
number = {6},
pages = {75--88},
year = {2017},
url = {https://doi.org/10.1186/s12918-017-0481-6},
doi = {10.1186/S12918-017-0481-6},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/WeiGNL17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/WelkenhuysenBBB17,
author = {Niek Welkenhuysen and
Johannes Borgqvist and
Mattias Backman and
Loubna Bendrioua and
Mattias Goks{\"{o}}r and
Caroline Beck Adiels and
Marija Cvijovic and
Stefan Hohmann},
title = {Single-cell study links metabolism with nutrient signaling and reveals
sources of variability},
journal = {{BMC} Syst. Biol.},
volume = {11},
number = {1},
pages = {59:1--59:10},
year = {2017},
url = {https://doi.org/10.1186/s12918-017-0435-z},
doi = {10.1186/S12918-017-0435-Z},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/WelkenhuysenBBB17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/WillH17,
author = {Thorsten Will and
Volkhard Helms},
title = {Rewiring of the inferred protein interactome during blood development
studied with the tool PPICompare},
journal = {{BMC} Syst. Biol.},
volume = {11},
number = {1},
pages = {44:1--44:19},
year = {2017},
url = {https://doi.org/10.1186/s12918-017-0400-x},
doi = {10.1186/S12918-017-0400-X},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/WillH17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/WuMWRPL17,
author = {Haoyang Wu and
Elise Miller and
Denethi Wijegunawardana and
Kelly Regan and
Philip R. O. Payne and
Fuhai Li},
title = {MD-Miner: a network-based approach for personalized drug repositioning},
journal = {{BMC} Syst. Biol.},
volume = {11},
number = {{S-5}},
pages = {86:1--86:8},
year = {2017},
url = {https://doi.org/10.1186/s12918-017-0462-9},
doi = {10.1186/S12918-017-0462-9},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/WuMWRPL17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/XuZZG17,
author = {Ying Xu and
Jiaogen Zhou and
Shuigeng Zhou and
Jihong Guan},
title = {CPredictor3.0: detecting protein complexes from {PPI} networks with
expression data and functional annotations},
journal = {{BMC} Syst. Biol.},
volume = {11},
number = {{S-7}},
pages = {45--56},
year = {2017},
url = {https://doi.org/10.1186/s12918-017-0504-3},
doi = {10.1186/S12918-017-0504-3},
timestamp = {Wed, 07 Dec 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcsb/XuZZG17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/YangTSC17,
author = {Xinan Holly Yang and
Fangming Tang and
Jisu Shin and
John M. Cunningham},
title = {Incorporating genomic, transcriptomic and clinical data: a prognostic
and stem cell-like {MYC} and {PRC} imbalance in high-risk neuroblastoma},
journal = {{BMC} Syst. Biol.},
volume = {11},
number = {{S-5}},
pages = {92:1--92:17},
year = {2017},
url = {https://doi.org/10.1186/s12918-017-0466-5},
doi = {10.1186/S12918-017-0466-5},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/YangTSC17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/YangYWLYZ17,
author = {Jian Yang and
Tinghong Yang and
Duzhi Wu and
Limei Lin and
Fan Yang and
Jing Zhao},
title = {The integration of weighted human gene association networks based
on link prediction},
journal = {{BMC} Syst. Biol.},
volume = {11},
number = {1},
pages = {12:1--12:17},
year = {2017},
url = {https://doi.org/10.1186/s12918-017-0398-0},
doi = {10.1186/S12918-017-0398-0},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/YangYWLYZ17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/ZhangGPTG17,
author = {Zehua Zhang and
Kecheng Guo and
Gaofeng Pan and
Jijun Tang and
Fei Guo},
title = {Improvement of phylogenetic method to analyze compositional heterogeneity},
journal = {{BMC} Syst. Biol.},
volume = {11},
number = {{S-4}},
pages = {27--33},
year = {2017},
url = {https://doi.org/10.1186/s12918-017-0453-x},
doi = {10.1186/S12918-017-0453-X},
timestamp = {Tue, 12 Apr 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/ZhangGPTG17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/ZhangLSLC17,
author = {Ben{-}gong Zhang and
Weibo Li and
Yazhou Shi and
Xiaoping Liu and
Luonan Chen},
title = {Detecting causality from short time-series data based on prediction
of topologically equivalent attractors},
journal = {{BMC} Syst. Biol.},
volume = {11},
number = {{S-7}},
pages = {141--150},
year = {2017},
url = {https://doi.org/10.1186/s12918-017-0512-3},
doi = {10.1186/S12918-017-0512-3},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/ZhangLSLC17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/ZhangLZZL17,
author = {Wenfei Zhang and
Ying Liu and
Mindy Zhang and
Cheng Zhu and
Yuefeng Lu},
title = {Quantitative reproducibility analysis for identifying reproducible
targets from high-throughput experiments},
journal = {{BMC} Syst. Biol.},
volume = {11},
number = {1},
pages = {73:1--73:7},
year = {2017},
url = {https://doi.org/10.1186/s12918-017-0444-y},
doi = {10.1186/S12918-017-0444-Y},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/ZhangLZZL17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/ZhangYLCTZ17,
author = {Wen Zhang and
Xiang Yue and
Feng Liu and
Yanlin Chen and
Shikui Tu and
Xining Zhang},
title = {A unified frame of predicting side effects of drugs by using linear
neighborhood similarity},
journal = {{BMC} Syst. Biol.},
volume = {11},
number = {6},
pages = {23--34},
year = {2017},
url = {https://doi.org/10.1186/s12918-017-0477-2},
doi = {10.1186/S12918-017-0477-2},
timestamp = {Sat, 09 Apr 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/ZhangYLCTZ17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/ZhengRXZL17,
author = {W. Jim Zheng and
Jianhua Ruan and
Hua Xu and
Zhongming Zhao and
Zhangdong Liu},
title = {The International Conference on Intelligent Biology and Medicine {(ICIBM)}
2016: putting systems biology to work},
journal = {{BMC} Syst. Biol.},
volume = {11},
number = {{S-5}},
pages = {88:1--88:3},
year = {2017},
url = {https://doi.org/10.1186/s12918-017-0461-x},
doi = {10.1186/S12918-017-0461-X},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/ZhengRXZL17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/ZihayatDA17,
author = {Morteza Zihayat and
Heidar Davoudi and
Aijun An},
title = {Mining significant high utility gene regulation sequential patterns},
journal = {{BMC} Syst. Biol.},
volume = {11},
number = {6},
pages = {109:1--109:14},
year = {2017},
url = {https://doi.org/10.1186/s12918-017-0475-4},
doi = {10.1186/S12918-017-0475-4},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/ZihayatDA17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/ZimmerADA17,
author = {Anat Zimmer and
Shlomit Amar{-}Farkash and
Tamar Danon and
Uri Alon},
title = {Dynamic proteomics reveals bimodal protein dynamics of cancer cells
in response to {HSP90} inhibitor},
journal = {{BMC} Syst. Biol.},
volume = {11},
number = {1},
pages = {33:1--33:11},
year = {2017},
url = {https://doi.org/10.1186/s12918-017-0410-8},
doi = {10.1186/S12918-017-0410-8},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/ZimmerADA17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/ZollanvariA17,
author = {Amin Zollanvari and
Gil Alterovitz},
title = {{SNP} by {SNP} by environment interaction network of alcoholism},
journal = {{BMC} Syst. Biol.},
volume = {11},
number = {3},
pages = {19:1--19:11},
year = {2017},
url = {https://doi.org/10.1186/s12918-017-0403-7},
doi = {10.1186/S12918-017-0403-7},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/ZollanvariA17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/ZouWZM17,
author = {Quan Zou and
Shixiang Wan and
Xiangxiang Zeng and
Zhanshan (Sam) Ma},
title = {Reconstructing evolutionary trees in parallel for massive sequences},
journal = {{BMC} Syst. Biol.},
volume = {11},
number = {6},
pages = {15--21},
year = {2017},
url = {https://doi.org/10.1186/s12918-017-0476-3},
doi = {10.1186/S12918-017-0476-3},
timestamp = {Wed, 07 Dec 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcsb/ZouWZM17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/AndorferHHLMP16,
author = {Peter Andorfer and
Alexander Heuwieser and
Andreas Heinzel and
Arno Lukas and
Bernd Mayer and
Paul Perco},
title = {Vascular endothelial growth factor {A} as predictive marker for mTOR
inhibition in relapsing high-grade serous ovarian cancer},
journal = {{BMC} Syst. Biol.},
volume = {10},
pages = {33},
year = {2016},
url = {https://doi.org/10.1186/s12918-016-0278-z},
doi = {10.1186/S12918-016-0278-Z},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/AndorferHHLMP16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/BabelB16,
author = {Heiko Babel and
Ilka B. Bischofs},
title = {Molecular and cellular factors control signal transduction via switchable
allosteric modulator proteins (SAMPs)},
journal = {{BMC} Syst. Biol.},
volume = {10},
pages = {35},
year = {2016},
url = {https://doi.org/10.1186/s12918-016-0274-3},
doi = {10.1186/S12918-016-0274-3},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcsb/BabelB16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/Bains16,
author = {William Bains},
title = {Low potency toxins reveal dense interaction networks in metabolism},
journal = {{BMC} Syst. Biol.},
volume = {10},
pages = {19},
year = {2016},
url = {https://doi.org/10.1186/s12918-016-0262-7},
doi = {10.1186/S12918-016-0262-7},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/Bains16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/BeckersDLMBFEW16,
author = {Veronique Beckers and
Lisa Maria Dersch and
Katrin Lotz and
Guido Melzer and
Oliver E. Bl{\"{a}}sing and
Regine Fuchs and
Thomas Ehrhardt and
Christoph Wittmann},
title = {\emph{In silico} metabolic network analysis of \emph{Arabidopsis}
leaves},
journal = {{BMC} Syst. Biol.},
volume = {10},
pages = {102},
year = {2016},
url = {https://doi.org/10.1186/s12918-016-0347-3},
doi = {10.1186/S12918-016-0347-3},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/BeckersDLMBFEW16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/BianconiBLPCV16,
author = {Fortunato Bianconi and
Elisa Baldelli and
Vienna Ludovini and
Emanuel F. Petricoin and
Lucio Crin{\`{o}} and
Paolo Valigi},
title = {Erratum to: 'Conditional robustness analysis for fragility discovery
and target identification in biochemical networks and in cancer systems
biology'},
journal = {{BMC} Syst. Biol.},
volume = {10},
pages = {24},
year = {2016},
url = {https://doi.org/10.1186/s12918-016-0267-2},
doi = {10.1186/S12918-016-0267-2},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/BianconiBLPCV16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/BoadaRPV16,
author = {Yadira Boada and
Gilberto Reynoso{-}Meza and
Jes{\'{u}}s Pic{\'{o}} and
Alejandro Vignoni},
title = {Multi-objective optimization framework to obtain model-based guidelines
for tuning biological synthetic devices: an adaptive network case},
journal = {{BMC} Syst. Biol.},
volume = {10},
pages = {27},
year = {2016},
url = {https://doi.org/10.1186/s12918-016-0269-0},
doi = {10.1186/S12918-016-0269-0},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/BoadaRPV16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/BorschS16,
author = {Anastasiya B{\"{o}}rsch and
J{\"{o}}rg Schaber},
title = {How time delay and network design shape response patterns in biochemical
negative feedback systems},
journal = {{BMC} Syst. Biol.},
volume = {10},
pages = {82},
year = {2016},
url = {https://doi.org/10.1186/s12918-016-0325-9},
doi = {10.1186/S12918-016-0325-9},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/BorschS16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/BrubakerBCM16,
author = {Douglas Brubaker and
Alethea Barbaro and
Mark R. Chance and
Sam Mesiano},
title = {A dynamical systems model of progesterone receptor interactions with
inflammation in human parturition},
journal = {{BMC} Syst. Biol.},
volume = {10},
pages = {79},
year = {2016},
url = {https://doi.org/10.1186/s12918-016-0320-1},
doi = {10.1186/S12918-016-0320-1},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/BrubakerBCM16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/BrunkMMZOBCCBP16,
author = {Elizabeth Brunk and
Nathan Mih and
Jonathan Monk and
Zhen Zhang and
Edward J. O'Brien and
Spencer E. Bliven and
Ke Chen and
Roger L. Chang and
Philip E. Bourne and
Bernhard O. Palsson},
title = {Systems biology of the structural proteome},
journal = {{BMC} Syst. Biol.},
volume = {10},
pages = {26},
year = {2016},
url = {https://doi.org/10.1186/s12918-016-0271-6},
doi = {10.1186/S12918-016-0271-6},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/BrunkMMZOBCCBP16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/BuddenC16,
author = {David M. Budden and
Edmund J. Crampin},
title = {Information theoretic approaches for inference of biological networks
from continuous-valued data},
journal = {{BMC} Syst. Biol.},
volume = {10},
pages = {89},
year = {2016},
url = {https://doi.org/10.1186/s12918-016-0331-y},
doi = {10.1186/S12918-016-0331-Y},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/BuddenC16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/CalderoneFAPACB16,
author = {Alberto Calderone and
Matteo Formenti and
Federica Aprea and
Michele Papa and
Lilia Alberghina and
Anna Maria Colangelo and
Paola Bertolazzi},
title = {Comparing Alzheimer's and Parkinson's diseases networks using graph
communities structure},
journal = {{BMC} Syst. Biol.},
volume = {10},
pages = {25},
year = {2016},
url = {https://doi.org/10.1186/s12918-016-0270-7},
doi = {10.1186/S12918-016-0270-7},
timestamp = {Sat, 09 Apr 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/CalderoneFAPACB16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/CamilloCET16,
author = {Barbara Di Camillo and
Azzurra Carlon and
Federica Eduati and
Gianna Maria Toffolo},
title = {A rule-based model of insulin signalling pathway},
journal = {{BMC} Syst. Biol.},
volume = {10},
pages = {38},
year = {2016},
url = {https://doi.org/10.1186/s12918-016-0281-4},
doi = {10.1186/S12918-016-0281-4},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/CamilloCET16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/CatozziDVS16,
author = {Simona Catozzi and
Juan Pablo Di{-}Bella and
Alejandra C. Ventura and
Jacques{-}A. Sepulchre},
title = {Signaling cascades transmit information downstream and upstream but
unlikely simultaneously},
journal = {{BMC} Syst. Biol.},
volume = {10},
pages = {84},
year = {2016},
url = {https://doi.org/10.1186/s12918-016-0303-2},
doi = {10.1186/S12918-016-0303-2},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcsb/CatozziDVS16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/ChaeLNK16,
author = {Heejoon Chae and
Sangseon Lee and
Kenneth P. Nephew and
Sun Kim},
title = {Subtype-specific CpG island shore methylation and mutation patterns
in 30 breast cancer cell lines},
journal = {{BMC} Syst. Biol.},
volume = {10},
number = {4},
pages = {433--443},
year = {2016},
url = {https://doi.org/10.1186/s12918-016-0356-2},
doi = {10.1186/S12918-016-0356-2},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/ChaeLNK16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/ChangHLTTCW16,
author = {Hsin{-}Chuan Chang and
Tsung{-}Han Hsieh and
Yi{-}Wei Lee and
Cheng{-}Fong Tsai and
Ya{-}Ni Tsai and
Cheng{-}Chung Cheng and
Hsei{-}Wei Wang},
title = {c-Myc and viral cofactor Kaposin {B} co-operate to elicit angiogenesis
through modulating miRNome traits of endothelial cells},
journal = {{BMC} Syst. Biol.},
volume = {10},
number = {{S-1}},
pages = {1},
year = {2016},
url = {https://doi.org/10.1186/s12918-015-0242-3},
doi = {10.1186/S12918-015-0242-3},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/ChangHLTTCW16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/ChenGHPBH16,
author = {Jin Chen and
Jose A. Gomez and
Kai H{\"{o}}ffner and
Poonam Phalak and
Paul I. Barton and
Michael A. Henson},
title = {Spatiotemporal modeling of microbial metabolism},
journal = {{BMC} Syst. Biol.},
volume = {10},
pages = {21},
year = {2016},
url = {https://doi.org/10.1186/s12918-016-0259-2},
doi = {10.1186/S12918-016-0259-2},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/ChenGHPBH16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/ChenL16,
author = {Bor{-}Sen Chen and
Cheng{-}Wei Li},
title = {Constructing an integrated genetic and epigenetic cellular network
for whole cellular mechanism using high-throughput next-generation
sequencing data},
journal = {{BMC} Syst. Biol.},
volume = {10},
pages = {18},
year = {2016},
url = {https://doi.org/10.1186/s12918-016-0256-5},
doi = {10.1186/S12918-016-0256-5},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/ChenL16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/ChenL16a,
author = {Pei Chen and
Yongjun Li},
title = {The decrease of consistence probability: at the crossroad of catastrophic
transition of a biological system},
journal = {{BMC} Syst. Biol.},
volume = {10},
number = {{S-2}},
pages = {50},
year = {2016},
url = {https://doi.org/10.1186/s12918-016-0295-y},
doi = {10.1186/S12918-016-0295-Y},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcsb/ChenL16a.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/ChengLSZ16,
author = {Feixiong Cheng and
Chuang Liu and
Bairong Shen and
Zhongming Zhao},
title = {Investigating cellular network heterogeneity and modularity in cancer:
a network entropy and unbalanced motif approach},
journal = {{BMC} Syst. Biol.},
volume = {10},
number = {{S-3}},
pages = {65},
year = {2016},
url = {https://doi.org/10.1186/s12918-016-0309-9},
doi = {10.1186/S12918-016-0309-9},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/ChengLSZ16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/ChoPLLC16,
author = {Sung{-}Hwan Cho and
Sang{-}Min Park and
Hosung Lee and
Hwang{-}Yeol Lee and
Kwang{-}Hyun Cho},
title = {Attractor landscape analysis of colorectal tumorigenesis and its reversion},
journal = {{BMC} Syst. Biol.},
volume = {10},
pages = {96},
year = {2016},
url = {https://doi.org/10.1186/s12918-016-0341-9},
doi = {10.1186/S12918-016-0341-9},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/ChoPLLC16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/ChooC16,
author = {Sang{-}Mok Choo and
Kwang{-}Hyun Cho},
title = {An efficient algorithm for identifying primary phenotype attractors
of a large-scale Boolean network},
journal = {{BMC} Syst. Biol.},
volume = {10},
pages = {95},
year = {2016},
url = {https://doi.org/10.1186/s12918-016-0338-4},
doi = {10.1186/S12918-016-0338-4},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/ChooC16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/DaiWMLJL16,
author = {Wentao Dai and
Aiping Wu and
Liang{-}Xiao Ma and
Yi{-}Xue Li and
Taijiao Jiang and
Yuan{-}Yuan Li},
title = {A novel index of protein-protein interface propensity improves interface
residue recognition},
journal = {{BMC} Syst. Biol.},
volume = {10},
number = {4},
pages = {381--392},
year = {2016},
url = {https://doi.org/10.1186/s12918-016-0351-7},
doi = {10.1186/S12918-016-0351-7},
timestamp = {Mon, 05 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcsb/DaiWMLJL16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/Doeschl-WilsonW16,
author = {Andrea Doeschl{-}Wilson and
Alison Wilson and
Jens Nielsen and
Hans Nauwynck and
Alan L. Archibald and
Tahar Ait{-}Ali},
title = {Combining laboratory and mathematical models to infer mechanisms underlying
kinetic changes in macrophage susceptibility to an {RNA} virus},
journal = {{BMC} Syst. Biol.},
volume = {10},
pages = {101},
year = {2016},
url = {https://doi.org/10.1186/s12918-016-0345-5},
doi = {10.1186/S12918-016-0345-5},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcsb/Doeschl-WilsonW16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/DongWL16,
author = {Qiwen Dong and
Kai Wang and
Xuan Liu},
title = {Identifying the missing proteins in human proteome by biological language
model},
journal = {{BMC} Syst. Biol.},
volume = {10},
number = {4},
pages = {393--399},
year = {2016},
url = {https://doi.org/10.1186/s12918-016-0352-6},
doi = {10.1186/S12918-016-0352-6},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/DongWL16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/DuHYKRIMSS16,
author = {Lei Du and
Heng Huang and
Jingwen Yan and
Sungeun Kim and
Shannon L. Risacher and
Mark Inlow and
Jason H. Moore and
Andrew J. Saykin and
Li Shen},
title = {Structured sparse {CCA} for brain imaging genetics via graph {OSCAR}},
journal = {{BMC} Syst. Biol.},
volume = {10},
number = {{S-3}},
pages = {68},
year = {2016},
url = {https://doi.org/10.1186/s12918-016-0312-1},
doi = {10.1186/S12918-016-0312-1},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/DuHYKRIMSS16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/DuZKDTZRAP16,
author = {Bin Du and
Daniel C. Zielinski and
Erol S. Kavvas and
Andreas Dr{\"{a}}ger and
Justin Tan and
Zhen Zhang and
Kayla E. Ruggiero and
Garri A. Arzumanyan and
Bernhard O. Palsson},
title = {Evaluation of rate law approximations in bottom-up kinetic models
of metabolism},
journal = {{BMC} Syst. Biol.},
volume = {10},
pages = {40},
year = {2016},
url = {https://doi.org/10.1186/s12918-016-0283-2},
doi = {10.1186/S12918-016-0283-2},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/DuZKDTZRAP16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/EkennaTA16,
author = {Chinwe Ekenna and
Shawna L. Thomas and
Nancy M. Amato},
title = {Adaptive local learning in sampling based motion planning for protein
folding},
journal = {{BMC} Syst. Biol.},
volume = {10},
number = {{S-2}},
pages = {49},
year = {2016},
url = {https://doi.org/10.1186/s12918-016-0297-9},
doi = {10.1186/S12918-016-0297-9},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/EkennaTA16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/FiedlerRTHH16,
author = {Anna Fiedler and
Sebastian Raeth and
Fabian J. Theis and
Angelika Hausser and
Jan Hasenauer},
title = {Tailored parameter optimization methods for ordinary differential
equation models with steady-state constraints},
journal = {{BMC} Syst. Biol.},
volume = {10},
pages = {80},
year = {2016},
url = {https://doi.org/10.1186/s12918-016-0319-7},
doi = {10.1186/S12918-016-0319-7},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/FiedlerRTHH16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/FleckPC16,
author = {Julia Lima Fleck and
Ana Br{\^{a}}ndusa Pavel and
Christos G. Cassandras},
title = {Integrating mutation and gene expression cross-sectional data to infer
cancer progression},
journal = {{BMC} Syst. Biol.},
volume = {10},
pages = {12},
year = {2016},
url = {https://doi.org/10.1186/s12918-016-0255-6},
doi = {10.1186/S12918-016-0255-6},
timestamp = {Sun, 01 Oct 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/FleckPC16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/FoladorCSFSGGBA16,
author = {Edson Luiz Folador and
Paulo Vin{\'{\i}}cius Sanches Daltro de Carvalho and
Wanderson Marques Silva and
Rafaela Salgado Ferreira and
Artur Silva and
M. Michael Gromiha and
Preetam Ghosh and
Debmalya Barh and
Vasco Ariston de Carvalho Azevedo and
Richard R{\"{o}}ttger},
title = {\emph{In silico} identification of essential proteins in \emph{Corynebacterium
pseudotuberculosis} based on protein-protein interaction networks},
journal = {{BMC} Syst. Biol.},
volume = {10},
pages = {103:1--103:9},
year = {2016},
url = {https://doi.org/10.1186/s12918-016-0346-4},
doi = {10.1186/S12918-016-0346-4},
timestamp = {Mon, 05 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcsb/FoladorCSFSGGBA16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/GanA16,
author = {Xiao Gan and
R{\'{e}}ka Albert},
title = {Analysis of a dynamic model of guard cell signaling reveals the stability
of signal propagation},
journal = {{BMC} Syst. Biol.},
volume = {10},
pages = {78},
year = {2016},
url = {https://doi.org/10.1186/s12918-016-0327-7},
doi = {10.1186/S12918-016-0327-7},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/GanA16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/GaoAMPGC16,
author = {Xuefeng Gao and
Christophe Arpin and
Jacqueline Marvel and
Sotiris A. Prokopiou and
Olivier Gandrillon and
Fabien Crauste},
title = {{IL-2} sensitivity and exogenous {IL-2} concentration gradient tune
the productive contact duration of CD8\({}^{\mbox{+}}\) {T} cell-APC:
a multiscale modeling study},
journal = {{BMC} Syst. Biol.},
volume = {10},
pages = {77},
year = {2016},
url = {https://doi.org/10.1186/s12918-016-0323-y},
doi = {10.1186/S12918-016-0323-Y},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/GaoAMPGC16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/GhazanfarBOLY16,
author = {Shila Ghazanfar and
Adam J. Bisogni and
John T. Ormerod and
David M. Lin and
Jean Yee Hwa Yang},
title = {Integrated single cell data analysis reveals cell specific networks
and novel coactivation markers},
journal = {{BMC} Syst. Biol.},
volume = {10},
number = {{S-5}},
pages = {11--24},
year = {2016},
url = {https://doi.org/10.1186/s12918-016-0370-4},
doi = {10.1186/S12918-016-0370-4},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/GhazanfarBOLY16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/HaoF16,
author = {Wenrui Hao and
Avner Friedman},
title = {Mathematical model on Alzheimer's disease},
journal = {{BMC} Syst. Biol.},
volume = {10},
pages = {108:1--108:18},
year = {2016},
url = {https://doi.org/10.1186/s12918-016-0348-2},
doi = {10.1186/S12918-016-0348-2},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcsb/HaoF16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/HoardJMT16,
author = {Brittany R. Hoard and
Bruna Jacobson and
Kasra Manavi and
Lydia Tapia},
title = {Extending rule-based methods to model molecular geometry and 3D model
resolution},
journal = {{BMC} Syst. Biol.},
volume = {10},
number = {{S-2}},
pages = {48},
year = {2016},
url = {https://doi.org/10.1186/s12918-016-0294-z},
doi = {10.1186/S12918-016-0294-Z},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/HoardJMT16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/HosseiniW16,
author = {Sayed{-}Rzgar Hosseini and
Andreas Wagner},
title = {The potential for non-adaptive origins of evolutionary innovations
in central carbon metabolism},
journal = {{BMC} Syst. Biol.},
volume = {10},
pages = {97},
year = {2016},
url = {https://doi.org/10.1186/s12918-016-0343-7},
doi = {10.1186/S12918-016-0343-7},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/HosseiniW16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/HsuCCHC16,
author = {Yu{-}Ching Hsu and
Yu{-}Chiao Chiu and
Yidong Chen and
Tzu{-}Hung Hsiao and
Eric Y. Chuang},
title = {A simple gene set-based method accurately predicts the synergy of
drug pairs},
journal = {{BMC} Syst. Biol.},
volume = {10},
number = {{S-3}},
pages = {66},
year = {2016},
url = {https://doi.org/10.1186/s12918-016-0310-3},
doi = {10.1186/S12918-016-0310-3},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/HsuCCHC16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/HuangLW16,
author = {Lei Huang and
Li Liao and
Cathy H. Wu},
title = {Protein-protein interaction prediction based on multiple kernels and
partial network with linear programming},
journal = {{BMC} Syst. Biol.},
volume = {10},
number = {{S-2}},
pages = {45},
year = {2016},
url = {https://doi.org/10.1186/s12918-016-0296-x},
doi = {10.1186/S12918-016-0296-X},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/HuangLW16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/HuangSKJWL16,
author = {Chien{-}Hsun Huang and
Min{-}Gang Su and
Hui{-}Ju Kao and
Jhih{-}Hua Jhong and
Shun{-}Long Weng and
Tzong{-}Yi Lee},
title = {UbiSite: incorporating two-layered machine learning method with substrate
motifs to predict ubiquitin-conjugation site on lysines},
journal = {{BMC} Syst. Biol.},
volume = {10},
number = {{S-1}},
pages = {6},
year = {2016},
url = {https://doi.org/10.1186/s12918-015-0246-z},
doi = {10.1186/S12918-015-0246-Z},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/HuangSKJWL16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/HuangWLW16,
author = {Kai{-}Yao Huang and
Julia Tzu{-}Ya Weng and
Tzong{-}Yi Lee and
Shun{-}Long Weng},
title = {A new scheme to discover functional associations and regulatory networks
of {E3} ubiquitin ligases},
journal = {{BMC} Syst. Biol.},
volume = {10},
number = {{S-1}},
pages = {3},
year = {2016},
url = {https://doi.org/10.1186/s12918-015-0244-1},
doi = {10.1186/S12918-015-0244-1},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/HuangWLW16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/HuangWZ16,
author = {Yan Huang and
Li Wang and
Lin{-}sen Zan},
title = {{ARN:} analysis and prediction by adipogenic professional database},
journal = {{BMC} Syst. Biol.},
volume = {10},
pages = {57},
year = {2016},
url = {https://doi.org/10.1186/s12918-016-0321-0},
doi = {10.1186/S12918-016-0321-0},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/HuangWZ16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/HuangYCY16,
author = {Yu{-}An Huang and
Zhu{-}Hong You and
Xing Chen and
Guiying Yan},
title = {Improved protein-protein interactions prediction via weighted sparse
representation model combining continuous wavelet descriptor and PseAA
composition},
journal = {{BMC} Syst. Biol.},
volume = {10},
number = {4},
pages = {485--494},
year = {2016},
url = {https://doi.org/10.1186/s12918-016-0360-6},
doi = {10.1186/S12918-016-0360-6},
timestamp = {Mon, 26 Jun 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/HuangYCY16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/IversonGMWGGZ16,
author = {Andrew Iverson and
Erin Garza and
Ryan Manow and
Jinhua Wang and
Yuanyuan Gao and
Scott Grayburn and
Shengde Zhou},
title = {Engineering a synthetic anaerobic respiration for reduction of xylose
to xylitol using {NADH} output of glucose catabolism by \emph{Escherichia
coli} {AI21}},
journal = {{BMC} Syst. Biol.},
volume = {10},
pages = {31},
year = {2016},
url = {https://doi.org/10.1186/s12918-016-0276-1},
doi = {10.1186/S12918-016-0276-1},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/IversonGMWGGZ16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/JankowskiOMT16,
author = {Aleksander Jankowski and
Paulina Obara and
Utsav Mathur and
Jerzy Tiuryn},
title = {Enhanceosome transcription factors preferentially dimerize with high
mobility group proteins},
journal = {{BMC} Syst. Biol.},
volume = {10},
pages = {14},
year = {2016},
url = {https://doi.org/10.1186/s12918-016-0258-3},
doi = {10.1186/S12918-016-0258-3},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/JankowskiOMT16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/JeanquartierJCH16,
author = {Fleur Jeanquartier and
Claire Jean{-}Quartier and
David Cemernek and
Andreas Holzinger},
title = {In silico modeling for tumor growth visualization},
journal = {{BMC} Syst. Biol.},
volume = {10},
pages = {59},
year = {2016},
url = {https://doi.org/10.1186/s12918-016-0318-8},
doi = {10.1186/S12918-016-0318-8},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/JeanquartierJCH16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/JermusykMR16,
author = {Ashley A. Jermusyk and
Nicholas P. Murphy and
Gregory T. Reeves},
title = {Analyzing negative feedback using a synthetic gene network expressed
in the \emph{Drosophila melanogaster} embryo},
journal = {{BMC} Syst. Biol.},
volume = {10},
pages = {85},
year = {2016},
url = {https://doi.org/10.1186/s12918-016-0330-z},
doi = {10.1186/S12918-016-0330-Z},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcsb/JermusykMR16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/JonakKSJAP16,
author = {Katarzyna Jonak and
Monika Kurpas and
Katarzyna Szoltysek and
Patryk Janus and
Agata Abramowicz and
Krzysztof Puszynski},
title = {A novel mathematical model of ATM/p53/NF- \emph{{\(\kappa\)}}B pathways
points to the importance of the {DDR} switch-off mechanisms},
journal = {{BMC} Syst. Biol.},
volume = {10},
pages = {75},
year = {2016},
url = {https://doi.org/10.1186/s12918-016-0293-0},
doi = {10.1186/S12918-016-0293-0},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/JonakKSJAP16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/JonakKSJAP16a,
author = {Katarzyna Jonak and
Monika Kurpas and
Katarzyna Szoltysek and
Patryk Janus and
Agata Abramowicz and
Krzysztof Puszynski},
title = {Erratum to: {A} novel mathematical model of ATM/p53/NF-{\(\kappa\)}B
pathways points to the importance of the {DDR} switch-off mechanisms},
journal = {{BMC} Syst. Biol.},
volume = {10},
pages = {99},
year = {2016},
url = {https://doi.org/10.1186/s12918-016-0340-x},
doi = {10.1186/S12918-016-0340-X},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/JonakKSJAP16a.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/JuarezLFGJAMM16,
author = {Edwin F. Juarez and
Roy Lau and
Samuel H. Friedman and
Ahmadreza Ghaffarizadeh and
Edmond A. Jonckheere and
David B. Agus and
Shannon M. Mumenthaler and
Paul Macklin},
title = {Quantifying differences in cell line population dynamics using CellPD},
journal = {{BMC} Syst. Biol.},
volume = {10},
pages = {92},
year = {2016},
url = {https://doi.org/10.1186/s12918-016-0337-5},
doi = {10.1186/S12918-016-0337-5},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/JuarezLFGJAMM16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/JungASKKJK16,
author = {Inuk Jung and
Hongryul Ahn and
Seon{-}Ju Shin and
Jukon Kim and
Hawk{-}Bin Kwon and
Woosuk Jung and
Sun Kim},
title = {Clustering and evolutionary analysis of small RNAs identify regulatory
siRNA clusters induced under drought stress in rice},
journal = {{BMC} Syst. Biol.},
volume = {10},
number = {4},
pages = {423--432},
year = {2016},
url = {https://doi.org/10.1186/s12918-016-0355-3},
doi = {10.1186/S12918-016-0355-3},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/JungASKKJK16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/KimTFHGC16,
author = {Seong Gon Kim and
Nawanol Theera{-}Ampornpunt and
Chih{-}Hao Fang and
Mrudul Harwani and
Ananth Grama and
Somali Chaterji},
title = {Opening up the blackbox: an interpretable deep neural network-based
classifier for cell-type specific enhancer predictions},
journal = {{BMC} Syst. Biol.},
volume = {10},
number = {{S-2}},
pages = {54},
year = {2016},
url = {https://doi.org/10.1186/s12918-016-0302-3},
doi = {10.1186/S12918-016-0302-3},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/KimTFHGC16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/KolczykC16,
author = {Katrin Kolczyk and
Carsten Conradi},
title = {Challenges in horizontal model integration},
journal = {{BMC} Syst. Biol.},
volume = {10},
pages = {28},
year = {2016},
url = {https://doi.org/10.1186/s12918-016-0266-3},
doi = {10.1186/S12918-016-0266-3},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/KolczykC16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/Kwon16,
author = {Yung{-}Keun Kwon},
title = {Properties of Boolean dynamics by node classification using feedback
loops in a network},
journal = {{BMC} Syst. Biol.},
volume = {10},
pages = {83},
year = {2016},
url = {https://doi.org/10.1186/s12918-016-0322-z},
doi = {10.1186/S12918-016-0322-Z},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/Kwon16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/LeeL16,
author = {Min{-}Su Lee and
HyungJune Lee},
title = {DMirNet: Inferring direct microRNA-mRNA association networks},
journal = {{BMC} Syst. Biol.},
volume = {10},
number = {{S-5}},
pages = {51--63},
year = {2016},
url = {https://doi.org/10.1186/s12918-016-0373-1},
doi = {10.1186/S12918-016-0373-1},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/LeeL16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/LegrandLRVG16,
author = {Jonathan Legrand and
Jean{-}Benoist L{\'{e}}ger and
St{\'{e}}phane Robin and
Teva Vernoux and
Yann Gu{\'{e}}don},
title = {Modelling the influence of dimerisation sequence dissimilarities on
the auxin signalling network},
journal = {{BMC} Syst. Biol.},
volume = {10},
pages = {22},
year = {2016},
url = {https://doi.org/10.1186/s12918-016-0254-7},
doi = {10.1186/S12918-016-0254-7},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/LegrandLRVG16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/LeniveKS16,
author = {Oleg Lenive and
Paul D. W. Kirk and
Michael P. H. Stumpf},
title = {Inferring extrinsic noise from single-cell gene expression data using
approximate Bayesian computation},
journal = {{BMC} Syst. Biol.},
volume = {10},
pages = {81},
year = {2016},
url = {https://doi.org/10.1186/s12918-016-0324-x},
doi = {10.1186/S12918-016-0324-X},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/LeniveKS16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/LeonWFB16,
author = {Miriam Leon and
Mae L. Woods and
Alex J. H. Fedorec and
Chris P. Barnes},
title = {A computational method for the investigation of multistable systems
and its application to genetic switches},
journal = {{BMC} Syst. Biol.},
volume = {10},
pages = {130:1--130:12},
year = {2016},
url = {https://doi.org/10.1186/s12918-016-0375-z},
doi = {10.1186/S12918-016-0375-Z},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/LeonWFB16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/LewisBCMC16,
author = {Joanna Lewis and
Charles E. Breeze and
Jane Charlesworth and
Oliver J. Maclaren and
Jonathan Cooper},
title = {Where next for the reproducibility agenda in computational biology?},
journal = {{BMC} Syst. Biol.},
volume = {10},
pages = {52},
year = {2016},
url = {https://doi.org/10.1186/s12918-016-0288-x},
doi = {10.1186/S12918-016-0288-X},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/LewisBCMC16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/LiCCL16,
author = {Ru{-}Dong Li and
Hui Cheng and
Tao Cheng and
Lei Liu},
title = {Digitalization of a non-irradiated acute myeloid leukemia model},
journal = {{BMC} Syst. Biol.},
volume = {10},
number = {{S-3}},
pages = {64},
year = {2016},
url = {https://doi.org/10.1186/s12918-016-0308-x},
doi = {10.1186/S12918-016-0308-X},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/LiCCL16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/LinPHCPGZL16,
author = {Mingyan Lin and
Erika Pedrosa and
Anastasia Hrabovsky and
Jian Chen and
Benjamin R. Puliafito and
Stephanie R. Gilbert and
Deyou Zheng and
Herbert M. Lachman},
title = {Integrative transcriptome network analysis of iPSC-derived neurons
from schizophrenia and schizoaffective disorder patients with 22q11.2
deletion},
journal = {{BMC} Syst. Biol.},
volume = {10},
pages = {105:1--105:20},
year = {2016},
url = {https://doi.org/10.1186/s12918-016-0366-0},
doi = {10.1186/S12918-016-0366-0},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/LinPHCPGZL16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/LiuGXGLZ16,
author = {Hui Liu and
Mengmeng Guo and
Ting Xue and
Jihong Guan and
Libo Luo and
Ziheng Zhuang},
title = {Screening lifespan-extending drugs in Caenorhabditis elegans via label
propagation on drug-protein networks},
journal = {{BMC} Syst. Biol.},
volume = {10},
number = {4},
pages = {509--519},
year = {2016},
url = {https://doi.org/10.1186/s12918-016-0362-4},
doi = {10.1186/S12918-016-0362-4},
timestamp = {Mon, 26 Jun 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/LiuGXGLZ16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/LiuJGYWL16,
author = {Cong Liu and
Jianping Jiang and
Jianlei Gu and
Zhangsheng Yu and
Tao Wang and
Hui Lu},
title = {High-dimensional omics data analysis using a variable screening protocol
with prior knowledge integration {(SKI)}},
journal = {{BMC} Syst. Biol.},
volume = {10},
number = {4},
pages = {457--464},
year = {2016},
url = {https://doi.org/10.1186/s12918-016-0358-0},
doi = {10.1186/S12918-016-0358-0},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcsb/LiuJGYWL16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/LiuLAS16,
author = {Yongchao Liu and
Martin Loewer and
Srinivas Aluru and
Bertil Schmidt},
title = {SNVSniffer: an integrated caller for germline and somatic single-nucleotide
and indel mutations},
journal = {{BMC} Syst. Biol.},
volume = {10},
number = {{S-2}},
pages = {47},
year = {2016},
url = {https://doi.org/10.1186/s12918-016-0300-5},
doi = {10.1186/S12918-016-0300-5},
timestamp = {Mon, 26 Jun 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/LiuLAS16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/LiuQLJ16,
author = {Rongjie Liu and
Chunjiang Qian and
Shuqian Liu and
Yufang Jin},
title = {State feedback control design for Boolean networks},
journal = {{BMC} Syst. Biol.},
volume = {10},
number = {{S-3}},
pages = {70},
year = {2016},
url = {https://doi.org/10.1186/s12918-016-0314-z},
doi = {10.1186/S12918-016-0314-Z},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/LiuQLJ16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/LuckW16,
author = {Alexander L{\"{u}}ck and
Verena Wolf},
title = {Generalized method of moments for estimating parameters of stochastic
reaction networks},
journal = {{BMC} Syst. Biol.},
volume = {10},
pages = {98:1--98:12},
year = {2016},
url = {https://doi.org/10.1186/s12918-016-0342-8},
doi = {10.1186/S12918-016-0342-8},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/LuckW16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/MangelBA16,
author = {Marc Mangel and
Michael B. Bonsall and
Aziz Aboobaker},
title = {Feedback control in planarian stem cell systems},
journal = {{BMC} Syst. Biol.},
volume = {10},
pages = {17},
year = {2016},
url = {https://doi.org/10.1186/s12918-016-0261-8},
doi = {10.1186/S12918-016-0261-8},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/MangelBA16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/MangericaoPZ16,
author = {Tatiana C. Mangericao and
Zhanhao Peng and
Xuegong Zhang},
title = {Computational prediction of {CRISPR} cassettes in gut metagenome samples
from Chinese type-2 diabetic patients and healthy controls},
journal = {{BMC} Syst. Biol.},
volume = {10},
number = {{S-1}},
pages = {5},
year = {2016},
url = {https://doi.org/10.1186/s12918-015-0248-x},
doi = {10.1186/S12918-015-0248-X},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/MangericaoPZ16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/MartinsEWM16,
author = {Teresa Vaz Martins and
Matthew J. Evans and
Derin B. Wysham and
Richard J. Morris},
title = {Nuclear pores enable sustained perinuclear calcium oscillations},
journal = {{BMC} Syst. Biol.},
volume = {10},
pages = {55},
year = {2016},
url = {https://doi.org/10.1186/s12918-016-0289-9},
doi = {10.1186/S12918-016-0289-9},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/MartinsEWM16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/MartyushenkoJGA16,
author = {Nikolay Martyushenko and
Sigurd Hagen Johansen and
Cheol{-}Min Ghim and
Eivind Almaas},
title = {Hypothetical biomolecular probe based on a genetic switch with tunable
symmetry and stability},
journal = {{BMC} Syst. Biol.},
volume = {10},
pages = {39},
year = {2016},
url = {https://doi.org/10.1186/s12918-016-0279-y},
doi = {10.1186/S12918-016-0279-Y},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/MartyushenkoJGA16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/McDermottMGEJBN16,
author = {Jason E. McDermott and
Hugh D. Mitchell and
Lisa E. Gralinski and
Amie J. Eisfeld and
Laurence Josset and
Armand Bankhead III and
Gabriele Neumann and
Susan C. Tilton and
Alexandra Sch{\"{a}}fer and
Chengjun Li and
Shufang Fan and
Shannon K. McWeeney and
Ralph S. Baric and
Michael G. Katze and
Katrina M. Waters},
title = {The effect of inhibition of {PP1} and TNF{\(\alpha\)} signaling on
pathogenesis of {SARS} coronavirus},
journal = {{BMC} Syst. Biol.},
volume = {10},
pages = {93},
year = {2016},
url = {https://doi.org/10.1186/s12918-016-0336-6},
doi = {10.1186/S12918-016-0336-6},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/McDermottMGEJBN16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/McKenzieKSWZ16,
author = {Andrew McKenzie and
Igor Katsyv and
Won{-}Min Song and
Minghui Wang and
Bin Zhang},
title = {{DGCA:} {A} comprehensive {R} package for Differential Gene Correlation
Analysis},
journal = {{BMC} Syst. Biol.},
volume = {10},
pages = {106:1--106:25},
year = {2016},
url = {https://doi.org/10.1186/s12918-016-0349-1},
doi = {10.1186/S12918-016-0349-1},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/McKenzieKSWZ16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/MoralesBVPL16,
author = {Yeimy Morales and
Gabriel Bosque and
Josep Veh{\'{\i}} and
Jes{\'{u}}s Pic{\'{o}} and
Francisco Llaneras},
title = {{PFA} toolbox: a {MATLAB} tool for Metabolic Flux Analysis},
journal = {{BMC} Syst. Biol.},
volume = {10},
pages = {46},
year = {2016},
url = {https://doi.org/10.1186/s12918-016-0284-1},
doi = {10.1186/S12918-016-0284-1},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/MoralesBVPL16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/MurrugarraVAL16,
author = {David Murrugarra and
Alan Veliz{-}Cuba and
Boris Aguilar and
Reinhard C. Laubenbacher},
title = {Identification of control targets in Boolean molecular network models
via computational algebra},
journal = {{BMC} Syst. Biol.},
volume = {10},
pages = {94},
year = {2016},
url = {https://doi.org/10.1186/s12918-016-0332-x},
doi = {10.1186/S12918-016-0332-X},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/MurrugarraVAL16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/NakicSPS16,
author = {Zrinka Raguz Nakic and
Gerhard Seisenbacher and
Francesc Posas and
Uwe Sauer},
title = {Untargeted metabolomics unravels functionalities of phosphorylation
sites in Saccharomyces cerevisiae},
journal = {{BMC} Syst. Biol.},
volume = {10},
pages = {104:1--104:15},
year = {2016},
url = {https://doi.org/10.1186/s12918-016-0350-8},
doi = {10.1186/S12918-016-0350-8},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/NakicSPS16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/NayakBD16,
author = {Losiana Nayak and
Nitai P. Bhattacharyya and
Rajat K. De},
title = {Wnt signal transduction pathways: modules, development and evolution},
journal = {{BMC} Syst. Biol.},
volume = {10},
number = {{S-2}},
pages = {44},
year = {2016},
url = {https://doi.org/10.1186/s12918-016-0299-7},
doi = {10.1186/S12918-016-0299-7},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/NayakBD16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/NazariehWWHH16,
author = {Maryam Nazarieh and
Andreas Wiese and
Thorsten Will and
Mohamed Hamed and
Volkhard Helms},
title = {Identification of key player genes in gene regulatory networks},
journal = {{BMC} Syst. Biol.},
volume = {10},
pages = {88},
year = {2016},
url = {https://doi.org/10.1186/s12918-016-0329-5},
doi = {10.1186/S12918-016-0329-5},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/NazariehWWHH16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/NguyenHST16,
author = {Binh P. Nguyen and
Hans Heemskerk and
Peter T. C. So and
Lisa Tucker{-}Kellogg},
title = {Superpixel-based segmentation of muscle fibers in multi-channel microscopy},
journal = {{BMC} Syst. Biol.},
volume = {10},
number = {{S-5}},
pages = {39--50},
year = {2016},
url = {https://doi.org/10.1186/s12918-016-0372-2},
doi = {10.1186/S12918-016-0372-2},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/NguyenHST16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/NimmegeersTLI16,
author = {Philippe Nimmegeers and
Dries Telen and
Filip Logist and
Jan F. M. Van Impe},
title = {Dynamic optimization of biological networks under parametric uncertainty},
journal = {{BMC} Syst. Biol.},
volume = {10},
pages = {86},
year = {2016},
url = {https://doi.org/10.1186/s12918-016-0328-6},
doi = {10.1186/S12918-016-0328-6},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcsb/NimmegeersTLI16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/OmonyMSB16,
author = {Jimmy Omony and
Astrid R. Mach{-}Aigner and
Gerrit van Straten and
Anton J. B. van Boxtel},
title = {Quantitative modeling and analytic assessment of the transcription
dynamics of the XlnR regulon in \emph{Aspergillus niger}},
journal = {{BMC} Syst. Biol.},
volume = {10},
pages = {13},
year = {2016},
url = {https://doi.org/10.1186/s12918-016-0257-4},
doi = {10.1186/S12918-016-0257-4},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/OmonyMSB16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/OremlandMBLML16,
author = {Matthew Oremland and
Kathryn R. Michels and
Alexandra M. Bettina and
Christopher Lawrence and
Borna Mehrad and
Reinhard C. Laubenbacher},
title = {A computational model of invasive aspergillosis in the lung and the
role of iron},
journal = {{BMC} Syst. Biol.},
volume = {10},
pages = {34},
year = {2016},
url = {https://doi.org/10.1186/s12918-016-0275-2},
doi = {10.1186/S12918-016-0275-2},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/OremlandMBLML16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/OuzounoglouDS16,
author = {Eleftherios Ouzounoglou and
Dimitra D. Dionysiou and
Georgios S. Stamatakos},
title = {Differentiation resistance through altered retinoblastoma protein
function in acute lymphoblastic leukemia: in silico modeling of the
deregulations in the {G1/S} restriction point pathway},
journal = {{BMC} Syst. Biol.},
volume = {10},
pages = {23},
year = {2016},
url = {https://doi.org/10.1186/s12918-016-0264-5},
doi = {10.1186/S12918-016-0264-5},
timestamp = {Mon, 03 Jan 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcsb/OuzounoglouDS16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/PavelSR16,
author = {Ana Br{\^{a}}ndusa Pavel and
Dmitriy Sonkin and
Anupama Reddy},
title = {Integrative modeling of multi-omics data to identify cancer drivers
and infer patient-specific gene activity},
journal = {{BMC} Syst. Biol.},
volume = {10},
pages = {16},
year = {2016},
url = {https://doi.org/10.1186/s12918-016-0260-9},
doi = {10.1186/S12918-016-0260-9},
timestamp = {Sun, 01 Oct 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/PavelSR16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/PeschZ16,
author = {Robert Pesch and
Ralf Zimmer},
title = {Cross-species Conservation of context-specific networks},
journal = {{BMC} Syst. Biol.},
volume = {10},
pages = {76},
year = {2016},
url = {https://doi.org/10.1186/s12918-016-0304-1},
doi = {10.1186/S12918-016-0304-1},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/PeschZ16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/PetereitSHS16,
author = {Juli Petereit and
Sebastian Smith and
Frederick C. Harris Jr. and
Karen Schlauch},
title = {petal: Co-expression network modelling in {R}},
journal = {{BMC} Syst. Biol.},
volume = {10},
number = {{S-2}},
pages = {51},
year = {2016},
url = {https://doi.org/10.1186/s12918-016-0298-8},
doi = {10.1186/S12918-016-0298-8},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/PetereitSHS16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/PhalakCCH16,
author = {Poonam Phalak and
Jin Chen and
Ross P. Carlson and
Michael A. Henson},
title = {Metabolic modeling of a chronic wound biofilm consortium predicts
spatial partitioning of bacterial species},
journal = {{BMC} Syst. Biol.},
volume = {10},
pages = {90},
year = {2016},
url = {https://doi.org/10.1186/s12918-016-0334-8},
doi = {10.1186/S12918-016-0334-8},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/PhalakCCH16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/PlattBZP16,
author = {Daniel E. Platt and
Saugata Basu and
Pierre A. Zalloua and
Laxmi Parida},
title = {Characterizing redescriptions using persistent homology to isolate
genetic pathways contributing to pathogenesis},
journal = {{BMC} Syst. Biol.},
volume = {10},
number = {{S-1}},
pages = {10},
year = {2016},
url = {https://doi.org/10.1186/s12918-015-0251-2},
doi = {10.1186/S12918-015-0251-2},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/PlattBZP16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/QinLSL16,
author = {Wenyi Qin and
Cong Liu and
Monsheel Sodhi and
Hui Lu},
title = {Meta-analysis of sex differences in gene expression in schizophrenia},
journal = {{BMC} Syst. Biol.},
volume = {10},
number = {{S-1}},
pages = {9},
year = {2016},
url = {https://doi.org/10.1186/s12918-015-0250-3},
doi = {10.1186/S12918-015-0250-3},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcsb/QinLSL16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/RenWHAK16,
author = {Yuanfang Ren and
Qiyao Wang and
Md Mahmudul Hasan and
Ahmet Ay and
Tamer Kahveci},
title = {Identifying the topology of signaling networks from partial RNAi data},
journal = {{BMC} Syst. Biol.},
volume = {10},
number = {{S-2}},
pages = {53},
year = {2016},
url = {https://doi.org/10.1186/s12918-016-0301-4},
doi = {10.1186/S12918-016-0301-4},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/RenWHAK16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/RohD16,
author = {Min K. Roh and
Bernie J. Daigle Jr.},
title = {SParSE++: improved event-based stochastic parameter search},
journal = {{BMC} Syst. Biol.},
volume = {10},
pages = {109:1--109:15},
year = {2016},
url = {https://doi.org/10.1186/s12918-016-0367-z},
doi = {10.1186/S12918-016-0367-Z},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/RohD16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/RougnyFCP16,
author = {Adrien Rougny and
Christine Froidevaux and
Laurence Calzone and
Lo{\"{\i}}c Paulev{\'{e}}},
title = {Qualitative dynamics semantics for {SBGN} process description},
journal = {{BMC} Syst. Biol.},
volume = {10},
pages = {42},
year = {2016},
url = {https://doi.org/10.1186/s12918-016-0285-0},
doi = {10.1186/S12918-016-0285-0},
timestamp = {Mon, 15 Jun 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/RougnyFCP16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/SalakhievaSCUEW16,
author = {Diana V. Salakhieva and
Ildar I. Sadreev and
Michael Z. Q. Chen and
Yoshinori Umezawa and
Aleksandr I. Evstifeev and
Gavin I. Welsh and
Nikolay V. Kotov},
title = {Kinetic regulation of multi-ligand binding proteins},
journal = {{BMC} Syst. Biol.},
volume = {10},
pages = {32},
year = {2016},
url = {https://doi.org/10.1186/s12918-016-0277-0},
doi = {10.1186/S12918-016-0277-0},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcsb/SalakhievaSCUEW16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/SanchezC16,
author = {Lucas S{\'{a}}nchez and
Claudine Chaouiya},
title = {Primary sex determination of placental mammals: a modelling study
uncovers dynamical developmental constraints in the formation of Sertoli
and granulosa cells},
journal = {{BMC} Syst. Biol.},
volume = {10},
pages = {37},
year = {2016},
url = {https://doi.org/10.1186/s12918-016-0282-3},
doi = {10.1186/S12918-016-0282-3},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/SanchezC16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/Sands16,
author = {Timothy R. Sands},
title = {Annual Acknowledgement of Reviewers},
journal = {{BMC} Syst. Biol.},
volume = {10},
pages = {29},
year = {2016},
url = {https://doi.org/10.1186/s12918-016-0272-5},
doi = {10.1186/S12918-016-0272-5},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/Sands16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/SchivoSVKPPL16,
author = {Stefano Schivo and
Jetse Scholma and
Paul E. van der Vet and
Marcel Karperien and
Janine N. Post and
Jaco van de Pol and
Rom Langerak},
title = {Modelling with {ANIMO:} between fuzzy logic and differential equations},
journal = {{BMC} Syst. Biol.},
volume = {10},
pages = {56},
year = {2016},
url = {https://doi.org/10.1186/s12918-016-0286-z},
doi = {10.1186/S12918-016-0286-Z},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/SchivoSVKPPL16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/SmithHWPHBSWZBF16,
author = {Robert W. Smith and
Britta Helwig and
Adrie H. Westphal and
Eran Pel and
Maximilian H{\"{o}}rner and
Hannes M. Beyer and
Sophia L. Samodelov and
Wilfried Weber and
Matias D. Zurbriggen and
Jan Willem Borst and
Christian Fleck},
title = {Unearthing the transition rates between photoreceptor conformers},
journal = {{BMC} Syst. Biol.},
volume = {10},
pages = {110:1--110:15},
year = {2016},
url = {https://doi.org/10.1186/s12918-016-0368-y},
doi = {10.1186/S12918-016-0368-Y},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/SmithHWPHBSWZBF16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/SokolenkoQA16,
author = {Stanislav Sokolenko and
Marco Quattrociocchi and
Marc Aucoin},
title = {Identifying model error in metabolic flux analysis - a generalized
least squares approach},
journal = {{BMC} Syst. Biol.},
volume = {10},
pages = {91},
year = {2016},
url = {https://doi.org/10.1186/s12918-016-0335-7},
doi = {10.1186/S12918-016-0335-7},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/SokolenkoQA16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/SunHVH16,
author = {Yahui Sun and
Pathima Nusrath Hameed and
Karin Verspoor and
Saman K. Halgamuge},
title = {A physarum-inspired prize-collecting steiner tree approach to identify
subnetworks for drug repositioning},
journal = {{BMC} Syst. Biol.},
volume = {10},
number = {{S-5}},
pages = {25--38},
year = {2016},
url = {https://doi.org/10.1186/s12918-016-0371-3},
doi = {10.1186/S12918-016-0371-3},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcsb/SunHVH16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/SunZZCZYZ16,
author = {Xiaoqiang Sun and
Jiajun Zhang and
Qi Zhao and
Xing Chen and
Wenbo Zhu and
Guangmei Yan and
Tianshou Zhou},
title = {Stochastic modeling suggests that noise reduces differentiation efficiency
by inducing a heterogeneous drug response in glioma differentiation
therapy},
journal = {{BMC} Syst. Biol.},
volume = {10},
pages = {73},
year = {2016},
url = {https://doi.org/10.1186/s12918-016-0316-x},
doi = {10.1186/S12918-016-0316-X},
timestamp = {Wed, 07 Dec 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcsb/SunZZCZYZ16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/TanevskiTD16,
author = {Jovan Tanevski and
Ljupco Todorovski and
Saso Dzeroski},
title = {Learning stochastic process-based models of dynamical systems from
knowledge and data},
journal = {{BMC} Syst. Biol.},
volume = {10},
pages = {30},
year = {2016},
url = {https://doi.org/10.1186/s12918-016-0273-4},
doi = {10.1186/S12918-016-0273-4},
timestamp = {Sat, 09 Apr 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/TanevskiTD16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/ThijssenDHW16,
author = {Bram Thijssen and
T. M. H. Dijkstra and
Tom Heskes and
Lodewyk F. A. Wessels},
title = {{BCM:} toolkit for Bayesian analysis of Computational Models using
samplers},
journal = {{BMC} Syst. Biol.},
volume = {10},
pages = {100},
year = {2016},
url = {https://doi.org/10.1186/s12918-016-0339-3},
doi = {10.1186/S12918-016-0339-3},
timestamp = {Tue, 29 Dec 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcsb/ThijssenDHW16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/TianMK16,
author = {Dan Tian and
Isaiah Mitchell and
Pamela K. Kreeger},
title = {Quantitative analysis of insulin-like growth factor 2 receptor and
insulin-like growth factor binding proteins to identify control mechanisms
for insulin-like growth factor 1 receptor phosphorylation},
journal = {{BMC} Syst. Biol.},
volume = {10},
pages = {15},
year = {2016},
url = {https://doi.org/10.1186/s12918-016-0263-6},
doi = {10.1186/S12918-016-0263-6},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/TianMK16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/TianWGLT16,
author = {Zhen Tian and
Chunyu Wang and
Maozu Guo and
Xiaoyan Liu and
Zhixia Teng},
title = {An improved method for functional similarity analysis of genes based
on Gene Ontology},
journal = {{BMC} Syst. Biol.},
volume = {10},
number = {4},
pages = {465--484},
year = {2016},
url = {https://doi.org/10.1186/s12918-016-0359-z},
doi = {10.1186/S12918-016-0359-Z},
timestamp = {Wed, 11 Nov 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcsb/TianWGLT16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/TorresA16,
author = {N{\'{u}}ria Ballber Torres and
Claudio Altafini},
title = {Drug combinatorics and side effect estimation on the signed human
drug-target network},
journal = {{BMC} Syst. Biol.},
volume = {10},
pages = {74},
year = {2016},
url = {https://doi.org/10.1186/s12918-016-0326-8},
doi = {10.1186/S12918-016-0326-8},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/TorresA16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/TruongTK16,
author = {Cong{-}Doan Truong and
Tien{-}Dzung Tran and
Yung{-}Keun Kwon},
title = {{MORO:} a Cytoscape app for relationship analysis between modularity
and robustness in large-scale biological networks},
journal = {{BMC} Syst. Biol.},
volume = {10},
number = {4},
pages = {521--530},
year = {2016},
url = {https://doi.org/10.1186/s12918-016-0363-3},
doi = {10.1186/S12918-016-0363-3},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/TruongTK16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/TycHHPKK16,
author = {Katarzyna M. Tyc and
Sanna E. Herwald and
Jennifer A. Hogan and
Jessica V. Pierce and
Edda Klipp and
Carol A. Kumamoto},
title = {The game theory of \emph{Candida albicans} colonization dynamics reveals
host status-responsive gene expression},
journal = {{BMC} Syst. Biol.},
volume = {10},
pages = {20},
year = {2016},
url = {https://doi.org/10.1186/s12918-016-0268-1},
doi = {10.1186/S12918-016-0268-1},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/TycHHPKK16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/ValeroMFHGG16,
author = {Edelmira Valero and
Hermenegilda Maci{\`{a}} and
Ildefonso M. De la Fuente and
Jos{\'{e}}{-}Antonio Hern{\'{a}}ndez and
Mar{\'{\i}}a{-}Isabel Gonz{\'{a}}lez{-}S{\'{a}}nchez and
Francisco Garc{\'{\i}}a{-}Carmona},
title = {Modeling the ascorbate-glutathione cycle in chloroplasts under light/dark
conditions},
journal = {{BMC} Syst. Biol.},
volume = {10},
pages = {11},
year = {2016},
url = {https://doi.org/10.1186/s12918-015-0239-y},
doi = {10.1186/S12918-015-0239-Y},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/ValeroMFHGG16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/VuralWG16,
author = {Suleyman Vural and
Xiaosheng Wang and
Chittibabu Guda},
title = {Classification of breast cancer patients using somatic mutation profiles
and machine learning approaches},
journal = {{BMC} Syst. Biol.},
volume = {10},
number = {{S-3}},
pages = {62},
year = {2016},
url = {https://doi.org/10.1186/s12918-016-0306-z},
doi = {10.1186/S12918-016-0306-Z},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/VuralWG16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/WallqvistFTYR16,
author = {Anders Wallqvist and
Xin Fang and
Shivendra G. Tewari and
Ping Ye and
Jaques Reifman},
title = {Metabolic host responses to malarial infection during the intraerythrocytic
developmental cycle},
journal = {{BMC} Syst. Biol.},
volume = {10},
pages = {58},
year = {2016},
url = {https://doi.org/10.1186/s12918-016-0291-2},
doi = {10.1186/S12918-016-0291-2},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/WallqvistFTYR16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/WalshSZRDS16,
author = {Jesse R. Walsh and
Mary L. Schaeffer and
Peifen Zhang and
Seung Yon Rhee and
Julie A. Dickerson and
Taner Z. Sen},
title = {The quality of metabolic pathway resources depends on initial enzymatic
function assignments: a case for maize},
journal = {{BMC} Syst. Biol.},
volume = {10},
pages = {129:1--129:9},
year = {2016},
url = {https://doi.org/10.1186/s12918-016-0369-x},
doi = {10.1186/S12918-016-0369-X},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/WalshSZRDS16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/WanABYRAL16,
author = {Ying{-}Wooi Wan and
Genevera I. Allen and
Yulia Baker and
Eunho Yang and
Pradeep Ravikumar and
Matthew Anderson and
Zhandong Liu},
title = {{XMRF:} an {R} package to fit Markov Networks to high-throughput genetics
data},
journal = {{BMC} Syst. Biol.},
volume = {10},
number = {{S-3}},
pages = {69},
year = {2016},
url = {https://doi.org/10.1186/s12918-016-0313-0},
doi = {10.1186/S12918-016-0313-0},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/WanABYRAL16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/WangHXL16,
author = {Yin Wang and
Tao Huang and
Lu Xie and
Lei Liu},
title = {Integrative analysis of methylation and transcriptional profiles to
predict aging and construct aging specific cross-tissue networks},
journal = {{BMC} Syst. Biol.},
volume = {10},
number = {4},
pages = {413--421},
year = {2016},
url = {https://doi.org/10.1186/s12918-016-0354-4},
doi = {10.1186/S12918-016-0354-4},
timestamp = {Mon, 05 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcsb/WangHXL16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/WangLM16,
author = {Yulin Wang and
Na Lu and
Hongyu Miao},
title = {Structural identifiability of cyclic graphical models of biological
networks with latent variables},
journal = {{BMC} Syst. Biol.},
volume = {10},
pages = {41},
year = {2016},
url = {https://doi.org/10.1186/s12918-016-0287-y},
doi = {10.1186/S12918-016-0287-Y},
timestamp = {Tue, 09 Feb 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcsb/WangLM16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/WeberDMGND16,
author = {Tom Serge Weber and
Mark Dukes and
Denise C. Miles and
Stefan P. Glaser and
Shalin H. Naik and
Ken R. Duffy},
title = {Site-specific recombinatorics: in situ cellular barcoding with the
Cre Lox system},
journal = {{BMC} Syst. Biol.},
volume = {10},
pages = {43},
year = {2016},
url = {https://doi.org/10.1186/s12918-016-0290-3},
doi = {10.1186/S12918-016-0290-3},
timestamp = {Sun, 31 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/WeberDMGND16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/WilmsC16,
author = {Ines Wilms and
Christophe Croux},
title = {Robust sparse canonical correlation analysis},
journal = {{BMC} Syst. Biol.},
volume = {10},
pages = {72},
year = {2016},
url = {https://doi.org/10.1186/s12918-016-0317-9},
doi = {10.1186/S12918-016-0317-9},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/WilmsC16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/WuLCYLL16,
author = {Su{-}Juan Wu and
Junyi Li and
Mushui Cao and
Jing Yang and
Yi{-}Xue Li and
Yuan{-}Yuan Li},
title = {A novel integrated gene coexpression analysis approach reveals a prognostic
three-transcription-factor signature for glioma molecular subtypes},
journal = {{BMC} Syst. Biol.},
volume = {10},
number = {{S-3}},
pages = {71},
year = {2016},
url = {https://doi.org/10.1186/s12918-016-0315-y},
doi = {10.1186/S12918-016-0315-Y},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/WuLCYLL16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/XuW16,
author = {Rong Xu and
QuanQiu Wang},
title = {Towards understanding brain-gut-microbiome connections in Alzheimer's
disease},
journal = {{BMC} Syst. Biol.},
volume = {10},
number = {{S-3}},
pages = {63},
year = {2016},
url = {https://doi.org/10.1186/s12918-016-0307-y},
doi = {10.1186/S12918-016-0307-Y},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/XuW16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/YangWYPWWSQLL16,
author = {Jing Yang and
Su{-}Juan Wu and
Shao{-}You Yang and
Jia{-}Wei Peng and
Shi{-}Nuo Wang and
Fu{-}Yan Wang and
Yu{-}Xing Song and
Ting Qi and
Yi{-}Xue Li and
Yuan{-}Yuan Li},
title = {DNetDB: The human disease network database based on dysfunctional
regulation mechanism},
journal = {{BMC} Syst. Biol.},
volume = {10},
pages = {36},
year = {2016},
url = {https://doi.org/10.1186/s12918-016-0280-5},
doi = {10.1186/S12918-016-0280-5},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/YangWYPWWSQLL16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/YuCPJKL16,
author = {Hasun Yu and
Sungji Choo and
Junseok Park and
Jinmyung Jung and
Yeeok Kang and
Doheon Lee},
title = {Prediction of drugs having opposite effects on disease genes in a
directed network},
journal = {{BMC} Syst. Biol.},
volume = {10},
number = {{S-1}},
pages = {2},
year = {2016},
url = {https://doi.org/10.1186/s12918-015-0243-2},
doi = {10.1186/S12918-015-0243-2},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/YuCPJKL16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/YuLFW16,
author = {Guo{-}Xian Yu and
Wei Luo and
Guangyuan Fu and
Jun Wang},
title = {Interspecies gene function prediction using semantic similarity},
journal = {{BMC} Syst. Biol.},
volume = {10},
number = {4},
pages = {495--507},
year = {2016},
url = {https://doi.org/10.1186/s12918-016-0361-5},
doi = {10.1186/S12918-016-0361-5},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/YuLFW16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/YuWMG16,
author = {Liang Yu and
Bingbo Wang and
Xiaoke Ma and
Lin Gao},
title = {The extraction of drug-disease correlations based on module distance
in incomplete human interactome},
journal = {{BMC} Syst. Biol.},
volume = {10},
number = {4},
pages = {531--539},
year = {2016},
url = {https://doi.org/10.1186/s12918-016-0364-2},
doi = {10.1186/S12918-016-0364-2},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcsb/YuWMG16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/YuanLTD16,
author = {Huili Yuan and
Zhenye Li and
Nelson L. S. Tang and
Minghua Deng},
title = {A network based covariance test for detecting multivariate eQTL in
saccharomyces cerevisiae},
journal = {{BMC} Syst. Biol.},
volume = {10},
number = {{S-1}},
pages = {8},
year = {2016},
url = {https://doi.org/10.1186/s12918-015-0245-0},
doi = {10.1186/S12918-015-0245-0},
timestamp = {Wed, 07 Dec 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcsb/YuanLTD16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/YueLGZDZ16,
author = {Xun Yue and
Xing Guo Li and
Xin{-}Qi Gao and
Xiang Yu Zhao and
Yu Xiu Dong and
Chao Zhou},
title = {The \emph{Arabidopsis} phytohormone crosstalk network involves a consecutive
metabolic route and circular control units of transcription factors
that regulate enzyme-encoding genes},
journal = {{BMC} Syst. Biol.},
volume = {10},
pages = {87},
year = {2016},
url = {https://doi.org/10.1186/s12918-016-0333-9},
doi = {10.1186/S12918-016-0333-9},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcsb/YueLGZDZ16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/ZhangCS16,
author = {Wangshu Zhang and
Marcelo P. Coba and
Fengzhu Sun},
title = {Inference of domain-disease associations from domain-protein, protein-disease
and disease-disease relationships},
journal = {{BMC} Syst. Biol.},
volume = {10},
number = {{S-1}},
pages = {4},
year = {2016},
url = {https://doi.org/10.1186/s12918-015-0247-y},
doi = {10.1186/S12918-015-0247-Y},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/ZhangCS16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/ZhangCZLPZ16,
author = {Fan Zhang and
Haoting Chen and
Li Na Zhao and
Hui Liu and
Teresa M. Przytycka and
Jie Zheng},
title = {Generalized logical model based on network topology to capture the
dynamical trends of cellular signaling pathways},
journal = {{BMC} Syst. Biol.},
volume = {10},
number = {{S-1}},
pages = {7},
year = {2016},
url = {https://doi.org/10.1186/s12918-015-0249-9},
doi = {10.1186/S12918-015-0249-9},
timestamp = {Wed, 30 Nov 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcsb/ZhangCZLPZ16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/ZhangLLLWJZZX16,
author = {Hao Zhang and
Yanpu Li and
Yuanning Liu and
Haiming Liu and
Hongyu Wang and
Wen Jin and
Yanmei Zhang and
Chao Zhang and
Dong Xu},
title = {Role of plant MicroRNA in cross-species regulatory networks of humans},
journal = {{BMC} Syst. Biol.},
volume = {10},
pages = {60},
year = {2016},
url = {https://doi.org/10.1186/s12918-016-0292-1},
doi = {10.1186/S12918-016-0292-1},
timestamp = {Wed, 07 Dec 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcsb/ZhangLLLWJZZX16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/ZhangLZ16,
author = {Fan Zhang and
Runsheng Liu and
Jie Zheng},
title = {Sig2GRN: a software tool linking signaling pathway with gene regulatory
network for dynamic simulation},
journal = {{BMC} Syst. Biol.},
volume = {10},
number = {4},
pages = {541--548},
year = {2016},
url = {https://doi.org/10.1186/s12918-016-0365-1},
doi = {10.1186/S12918-016-0365-1},
timestamp = {Wed, 30 Nov 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcsb/ZhangLZ16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/ZhangN16,
author = {Shuqin Zhang and
Michael K. Ng},
title = {Gene-microRNA network module analysis for ovarian cancer},
journal = {{BMC} Syst. Biol.},
volume = {10},
number = {4},
pages = {445--455},
year = {2016},
url = {https://doi.org/10.1186/s12918-016-0357-1},
doi = {10.1186/S12918-016-0357-1},
timestamp = {Wed, 03 Aug 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/ZhangN16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/ZhangW0WSLX16,
author = {Yaoyun Zhang and
Heng{-}Yi Wu and
Jun Xu and
Jingqi Wang and
Ergin Soysal and
Lang Li and
Hua Xu},
title = {Leveraging syntactic and semantic graph kernels to extract pharmacokinetic
drug drug interactions from biomedical literature},
journal = {{BMC} Syst. Biol.},
volume = {10},
number = {{S-3}},
pages = {67},
year = {2016},
url = {https://doi.org/10.1186/s12918-016-0311-2},
doi = {10.1186/S12918-016-0311-2},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/ZhangW0WSLX16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/ZhaoLHHR16,
author = {Zhongming Zhao and
Yunlong Liu and
Yufei Huang and
Kun Huang and
Jianhua Ruan},
title = {Advancing Systems Biology in the International Conference on Intelligent
Biology and Medicine {(ICIBM)} 2015},
journal = {{BMC} Syst. Biol.},
volume = {10},
number = {{S-3}},
pages = {61},
year = {2016},
url = {https://doi.org/10.1186/s12918-016-0305-0},
doi = {10.1186/S12918-016-0305-0},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/ZhaoLHHR16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/ZhengHZVLFMCNS16,
author = {Yun Zheng and
Vandana Hivrale and
Xiaotuo Zhang and
Babu Valliyodan and
Christine Lelandais{-}Bri{\`{e}}re and
Andrew D. Farmer and
Gregory D. May and
Martin Crespi and
Henry T. Nguyen and
Ramanjulu Sunkar},
title = {Small {RNA} profiles in soybean primary root tips under water deficit},
journal = {{BMC} Syst. Biol.},
volume = {10},
number = {{S-5}},
pages = {1--10},
year = {2016},
url = {https://doi.org/10.1186/s12918-016-0374-0},
doi = {10.1186/S12918-016-0374-0},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/ZhengHZVLFMCNS16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/ZhouN16,
author = {Xiaoyuan Zhou and
Christine Nardini},
title = {A method for automated pathogenic content estimation with application
to rheumatoid arthritis},
journal = {{BMC} Syst. Biol.},
volume = {10},
pages = {107:1--107:8},
year = {2016},
url = {https://doi.org/10.1186/s12918-016-0344-6},
doi = {10.1186/S12918-016-0344-6},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/ZhouN16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/ZouWJTZ16,
author = {Quan Zou and
Shixiang Wan and
Ying Ju and
Jijun Tang and
Xiangxiang Zeng},
title = {Pretata: predicting {TATA} binding proteins with novel features and
dimensionality reduction strategy},
journal = {{BMC} Syst. Biol.},
volume = {10},
number = {4},
pages = {401--412},
year = {2016},
url = {https://doi.org/10.1186/s12918-016-0353-5},
doi = {10.1186/S12918-016-0353-5},
timestamp = {Wed, 07 Dec 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcsb/ZouWJTZ16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/AbedpourK15,
author = {Nima Abedpour and
Markus Kollmann},
title = {Resource constrained flux balance analysis predicts selective pressure
on the global structure of metabolic networks},
journal = {{BMC} Syst. Biol.},
volume = {9},
pages = {88},
year = {2015},
url = {https://doi.org/10.1186/s12918-015-0232-5},
doi = {10.1186/S12918-015-0232-5},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/AbedpourK15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/AbshagenKHMEWHZ15,
author = {Kerstin Abshagen and
Matthias K{\"{o}}nig and
Andreas Hoppe and
Isabell M{\"{u}}ller and
Matthias Ebert and
Honglei Weng and
Hermann{-}Georg Holzh{\"{u}}tter and
Ulrich M. Zanger and
Johannes G. Bode and
Brigitte Vollmar and
Maria Thomas and
Steven Dooley},
title = {Pathobiochemical signatures of cholestatic liver disease in bile duct
ligated mice},
journal = {{BMC} Syst. Biol.},
volume = {9},
pages = {83},
year = {2015},
url = {https://doi.org/10.1186/s12918-015-0229-0},
doi = {10.1186/S12918-015-0229-0},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/AbshagenKHMEWHZ15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/AlaimoBCFGP15,
author = {Salvatore Alaimo and
Vincenzo Bonnici and
Damiano Cancemi and
Alfredo Ferro and
Rosalba Giugno and
Alfredo Pulvirenti},
title = {DT-Web: a web-based application for drug-target interaction and drug
combination prediction through domain-tuned network-based inference},
journal = {{BMC} Syst. Biol.},
volume = {9},
number = {{S-3}},
pages = {S4},
year = {2015},
url = {https://doi.org/10.1186/1752-0509-9-S3-S4},
doi = {10.1186/1752-0509-9-S3-S4},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/AlaimoBCFGP15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/AndoKH15,
author = {Tatsuya Ando and
Ryuji Kato and
Hiroyuki Honda},
title = {Differential variability and correlation of gene expression identifies
key genes involved in neuronal differentiation},
journal = {{BMC} Syst. Biol.},
volume = {9},
pages = {82},
year = {2015},
url = {https://doi.org/10.1186/s12918-015-0231-6},
doi = {10.1186/S12918-015-0231-6},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/AndoKH15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/AzadLK15,
author = {A. K. M. Azad and
Alfons Lawen and
Jonathan M. Keith},
title = {Prediction of signaling cross-talks contributing to acquired drug
resistance in breast cancer cells by Bayesian statistical modeling},
journal = {{BMC} Syst. Biol.},
volume = {9},
pages = {2},
year = {2015},
url = {https://doi.org/10.1186/s12918-014-0135-x},
doi = {10.1186/S12918-014-0135-X},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/AzadLK15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/BenderG15,
author = {R. Joseph Bender and
Feilim Mac Gabhann},
title = {Dysregulation of the vascular endothelial growth factor and semaphorin
ligand-receptor families in prostate cancer metastasis},
journal = {{BMC} Syst. Biol.},
volume = {9},
pages = {55},
year = {2015},
url = {https://doi.org/10.1186/s12918-015-0201-z},
doi = {10.1186/S12918-015-0201-Z},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/BenderG15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/BhargavaHA15,
author = {Anuprabha Bhargava and
Hanspeter Herzel and
Bharath Ananthasubramaniam},
title = {Mining for novel candidate clock genes in the circadian regulatory
network},
journal = {{BMC} Syst. Biol.},
volume = {9},
pages = {78},
year = {2015},
url = {https://doi.org/10.1186/s12918-015-0227-2},
doi = {10.1186/S12918-015-0227-2},
timestamp = {Sun, 25 Jul 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/BhargavaHA15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/BianconiBLPCV15,
author = {Fortunato Bianconi and
Elisa Baldelli and
Vienna Ludovini and
Emanuel F. Petricoin and
Lucio Crin{\`{o}} and
Paolo Valigi},
title = {Conditional robustness analysis for fragility discovery and target
identification in biochemical networks and in cancer systems biology},
journal = {{BMC} Syst. Biol.},
volume = {9},
pages = {70},
year = {2015},
url = {https://doi.org/10.1186/s12918-015-0216-5},
doi = {10.1186/S12918-015-0216-5},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/BianconiBLPCV15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/BlanchardL15,
author = {Andrew E. Blanchard and
Ting Lu},
title = {Bacterial social interactions drive the emergence of differential
spatial colony structures},
journal = {{BMC} Syst. Biol.},
volume = {9},
pages = {59},
year = {2015},
url = {https://doi.org/10.1186/s12918-015-0188-5},
doi = {10.1186/S12918-015-0188-5},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/BlanchardL15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/BoasJMB15,
author = {Sonja E. M. Boas and
Mar{\'{\i}}a I. Navarro Jimenez and
Roeland M. H. Merks and
Joke G. Blom},
title = {A global sensitivity analysis approach for morphogenesis models},
journal = {{BMC} Syst. Biol.},
volume = {9},
pages = {85},
year = {2015},
url = {https://doi.org/10.1186/s12918-015-0222-7},
doi = {10.1186/S12918-015-0222-7},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/BoasJMB15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/BoasM15,
author = {Sonja E. M. Boas and
Roeland M. H. Merks},
title = {Tip cell overtaking occurs as a side effect of sprouting in computational
models of angiogenesis},
journal = {{BMC} Syst. Biol.},
volume = {9},
pages = {86},
year = {2015},
url = {https://doi.org/10.1186/s12918-015-0230-7},
doi = {10.1186/S12918-015-0230-7},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/BoasM15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/BotmanJRMJK15,
author = {Daniel Botman and
Fredrik Jansson and
Eric R{\"{o}}ttinger and
Mark Q. Martindale and
Johann de Jong and
Jaap A. Kaandorp},
title = {Analysis of a spatial gene expression database for sea anemone Nematostella
vectensis during early development},
journal = {{BMC} Syst. Biol.},
volume = {9},
pages = {63},
year = {2015},
url = {https://doi.org/10.1186/s12918-015-0209-4},
doi = {10.1186/S12918-015-0209-4},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/BotmanJRMJK15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/BrandonHLL15,
author = {Madison Brandon and
Brad Howard and
Christopher Lawrence and
Reinhard C. Laubenbacher},
title = {Iron acquisition and oxidative stress response in aspergillus fumigatus},
journal = {{BMC} Syst. Biol.},
volume = {9},
pages = {19},
year = {2015},
url = {https://doi.org/10.1186/s12918-015-0163-1},
doi = {10.1186/S12918-015-0163-1},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/BrandonHLL15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/CaiLHGKW15,
author = {Hong Cai and
Timothy G. Lilburn and
Changjin Hong and
Jianying Gu and
Rui Kuang and
Yufeng Wang},
title = {Predicting and exploring network components involved in pathogenesis
in the malaria parasite via novel subnetwork alignments},
journal = {{BMC} Syst. Biol.},
volume = {9},
number = {{S-4}},
pages = {S1},
year = {2015},
url = {https://doi.org/10.1186/1752-0509-9-S4-S1},
doi = {10.1186/1752-0509-9-S4-S1},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/CaiLHGKW15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/CavaBC15,
author = {Claudia Cava and
Gloria Bertoli and
Isabella Castiglioni},
title = {Integrating genetics and epigenetics in breast cancer: biological
insights, experimental, computational methods and therapeutic potential},
journal = {{BMC} Syst. Biol.},
volume = {9},
pages = {62},
year = {2015},
url = {https://doi.org/10.1186/s12918-015-0211-x},
doi = {10.1186/S12918-015-0211-X},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/CavaBC15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/Chamard-Jovenin15,
author = {Cl{\'{e}}mence Chamard{-}Jovenin and
Alain Jung and
Amand Chesnel and
Joseph Abecassis and
St{\'{e}}phane Flament and
Sonia Ledrappier and
Christine Macabre and
Taha Boukhobza and
H{\'{e}}l{\`{e}}ne Dumond},
title = {From ER{\(\alpha\)}66 to ER{\(\alpha\)}36: a generic method for validating
a prognosis marker of breast tumor progression},
journal = {{BMC} Syst. Biol.},
volume = {9},
pages = {28},
year = {2015},
url = {https://doi.org/10.1186/s12918-015-0178-7},
doi = {10.1186/S12918-015-0178-7},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcsb/Chamard-Jovenin15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/ChenLLL15,
author = {Ye Chen and
Cheng Lv and
Fangting Li and
Tiejun Li},
title = {Distinguishing the rates of gene activation from phenotypic variations},
journal = {{BMC} Syst. Biol.},
volume = {9},
pages = {29},
year = {2015},
url = {https://doi.org/10.1186/s12918-015-0172-0},
doi = {10.1186/S12918-015-0172-0},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/ChenLLL15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/ChenLYYL15,
author = {Di Chen and
Xi Liu and
Yiping Yang and
Hongjun Yang and
Peng Lu},
title = {Systematic synergy modeling: understanding drug synergy from a systems
biology perspective},
journal = {{BMC} Syst. Biol.},
volume = {9},
pages = {56},
year = {2015},
url = {https://doi.org/10.1186/s12918-015-0202-y},
doi = {10.1186/S12918-015-0202-Y},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/ChenLYYL15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/ChiarugiFHOT15,
author = {Davide Chiarugi and
Moreno Falaschi and
Diana Hermith and
Carlos Olarte and
Luca Torella},
title = {Modelling non-Markovian dynamics in biochemical reactions},
journal = {{BMC} Syst. Biol.},
volume = {9},
number = {{S-3}},
pages = {S8},
year = {2015},
url = {https://doi.org/10.1186/1752-0509-9-S3-S8},
doi = {10.1186/1752-0509-9-S3-S8},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/ChiarugiFHOT15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/ChristensenHR15,
author = {Carl D. Christensen and
Jan{-}Hendrik S. Hofmeyr and
Johann M. Rohwer},
title = {Tracing regulatory routes in metabolism using generalised supply-demand
analysis},
journal = {{BMC} Syst. Biol.},
volume = {9},
pages = {89},
year = {2015},
url = {https://doi.org/10.1186/s12918-015-0236-1},
doi = {10.1186/S12918-015-0236-1},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/ChristensenHR15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/ColeKHL15,
author = {John A. Cole and
Lars Kohler and
Jamila Hedhli and
Zaida Luthey{-}Schulten},
title = {Spatially-resolved metabolic cooperativity within dense bacterial
colonies},
journal = {{BMC} Syst. Biol.},
volume = {9},
pages = {15},
year = {2015},
url = {https://doi.org/10.1186/s12918-015-0155-1},
doi = {10.1186/S12918-015-0155-1},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/ColeKHL15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/CookOV15,
author = {Daniel Cook and
Babatunde A. Ogunnaike and
Rajanikanth Vadigepalli},
title = {Systems analysis of non-parenchymal cell modulation of liver repair
across multiple regeneration modes},
journal = {{BMC} Syst. Biol.},
volume = {9},
pages = {71},
year = {2015},
url = {https://doi.org/10.1186/s12918-015-0220-9},
doi = {10.1186/S12918-015-0220-9},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/CookOV15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/CurrieRGTLBCKYE15,
author = {Devin H. Currie and
Babu Raman and
Christopher M. Gowen and
Timothy J. Tschaplinski and
Miriam L. Land and
Steven D. Brown and
Sean F. Covalla and
Dawn M. Klingeman and
Zamin K. Yang and
Nancy L. Engle and
Courtney M. Johnson and
Miguel Rodriguez and
A. Shaw and
William R. Kenealy and
Lee R. Lynd and
Stephen S. Fong and
Jonathan R. Mielenz and
Brian H. Davison and
David A. Hogsett and
Christopher D. Herring},
title = {Genome-scale resources for Thermoanaerobacterium saccharolyticum},
journal = {{BMC} Syst. Biol.},
volume = {9},
pages = {30},
year = {2015},
url = {https://doi.org/10.1186/s12918-015-0159-x},
doi = {10.1186/S12918-015-0159-X},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcsb/CurrieRGTLBCKYE15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/CursonsGHPDJC15,
author = {Joseph Cursons and
Jerry Gao and
Daniel G. Hurley and
Cristin G. Print and
P. Rod Dunbar and
Marc Jacobs and
Edmund J. Crampin},
title = {Regulation of {ERK-MAPK} signaling in human epidermis},
journal = {{BMC} Syst. Biol.},
volume = {9},
pages = {41},
year = {2015},
url = {https://doi.org/10.1186/s12918-015-0187-6},
doi = {10.1186/S12918-015-0187-6},
timestamp = {Wed, 21 Jun 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/CursonsGHPDJC15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/CzerwinskaCBZ15,
author = {Urszula Czerwinska and
Laurence Calzone and
Emmanuel Barillot and
Andrei Yu. Zinovyev},
title = {DeDaL: Cytoscape 3 app for producing and morphing data-driven and
structure-driven network layouts},
journal = {{BMC} Syst. Biol.},
volume = {9},
pages = {46},
year = {2015},
url = {https://doi.org/10.1186/s12918-015-0189-4},
doi = {10.1186/S12918-015-0189-4},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/CzerwinskaCBZ15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/DanzigerRRSPAB15,
author = {Samuel A. Danziger and
David J. Reiss and
Alexander V. Ratushny and
Jennifer J. Smith and
Christopher L. Plaisier and
John D. Aitchison and
Nitin S. Baliga},
title = {Bicluster Sampled Coherence Metric {(BSCM)} provides an accurate environmental
context for phenotype predictions},
journal = {{BMC} Syst. Biol.},
volume = {9},
number = {{S-2}},
pages = {S1},
year = {2015},
url = {https://doi.org/10.1186/1752-0509-9-S2-S1},
doi = {10.1186/1752-0509-9-S2-S1},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/DanzigerRRSPAB15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/Davila-Velderrain15,
author = {Jose Davila{-}Velderrain and
Carlos Villarreal and
Elena R. {\'{A}}lvarez{-}Buylla},
title = {Reshaping the epigenetic landscape during early flower development:
induction of attractor transitions by relative differences in gene
decay rates},
journal = {{BMC} Syst. Biol.},
volume = {9},
pages = {20},
year = {2015},
url = {https://doi.org/10.1186/s12918-015-0166-y},
doi = {10.1186/S12918-015-0166-Y},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/Davila-Velderrain15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/DengGW15,
author = {Yue Deng and
Lin Gao and
Bingbo Wang},
title = {Erratum to: ppiPre: predicting protein-protein interactions by combining
heterogeneous features},
journal = {{BMC} Syst. Biol.},
volume = {9},
pages = {50},
year = {2015},
url = {https://doi.org/10.1186/s12918-015-0196-5},
doi = {10.1186/S12918-015-0196-5},
timestamp = {Wed, 20 Jul 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/DengGW15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/DexterXGM15,
author = {Joseph P. Dexter and
Ping Xu and
Jeremy Gunawardena and
Megan N. McClean},
title = {Robust network structure of the Sln1-Ypd1-Ssk1 three-component phospho-relay
prevents unintended activation of the {HOG} {MAPK} pathway in Saccharomyces
cerevisiae},
journal = {{BMC} Syst. Biol.},
volume = {9},
pages = {17},
year = {2015},
url = {https://doi.org/10.1186/s12918-015-0158-y},
doi = {10.1186/S12918-015-0158-Y},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/DexterXGM15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/DragerZKREPZ15,
author = {Andreas Dr{\"{a}}ger and
Daniel C. Zielinski and
Roland Keller and
Matthias Rall and
Johannes Eichner and
Bernhard O. Palsson and
Andreas Zell},
title = {SBMLsqueezer 2: context-sensitive creation of kinetic equations in
biochemical networks},
journal = {{BMC} Syst. Biol.},
volume = {9},
pages = {68},
year = {2015},
url = {https://doi.org/10.1186/s12918-015-0212-9},
doi = {10.1186/S12918-015-0212-9},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/DragerZKREPZ15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/ErdrichSK15,
author = {Philipp Erdrich and
Ralf Steuer and
Steffen Klamt},
title = {An algorithm for the reduction of genome-scale metabolic network models
to meaningful core models},
journal = {{BMC} Syst. Biol.},
volume = {9},
pages = {48},
year = {2015},
url = {https://doi.org/10.1186/s12918-015-0191-x},
doi = {10.1186/S12918-015-0191-X},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/ErdrichSK15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/FaustinoWGMTP15,
author = {Randolph Faustino and
Saranya Wyles and
Jody Groenendyk and
Marek Michalak and
Andre Terzic and
Carmen Perez{-}Terzic},
title = {Systems biology surveillance decrypts pathological transcriptome remodeling},
journal = {{BMC} Syst. Biol.},
volume = {9},
pages = {36},
year = {2015},
url = {https://doi.org/10.1186/s12918-015-0177-8},
doi = {10.1186/S12918-015-0177-8},
timestamp = {Mon, 26 Jun 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/FaustinoWGMTP15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/FearASDTNM15,
author = {Justin M. Fear and
Michelle N. Arbeitman and
Matthew Salomon and
Justin Dalton and
John Tower and
Sergey V. Nuzhdin and
Lauren M. McIntyre},
title = {The wright stuff: reimagining path analysis reveals novel components
of the sex determination hierarchy in drosophila melanogaster},
journal = {{BMC} Syst. Biol.},
volume = {9},
pages = {53},
year = {2015},
url = {https://doi.org/10.1186/s12918-015-0200-0},
doi = {10.1186/S12918-015-0200-0},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcsb/FearASDTNM15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/FeliuW15,
author = {Elisenda Feliu and
Carsten Wiuf},
title = {Finding the positive feedback loops underlying multi-stationarity},
journal = {{BMC} Syst. Biol.},
volume = {9},
pages = {22},
year = {2015},
url = {https://doi.org/10.1186/s12918-015-0164-0},
doi = {10.1186/S12918-015-0164-0},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/FeliuW15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/FieldDCSAMGO15,
author = {Sarah L. Field and
Tathagata Dasgupta and
Michele Cummings and
Richard S. Savage and
Julius Adebayo and
Hema McSara and
Jeremy Gunawardena and
Nicolas M. Orsi},
title = {Bayesian modeling suggests that {IL-12} (p40), {IL-13} and {MCP-1}
drive murine cytokine networks \emph{in vivo}},
journal = {{BMC} Syst. Biol.},
volume = {9},
pages = {76},
year = {2015},
url = {https://doi.org/10.1186/s12918-015-0226-3},
doi = {10.1186/S12918-015-0226-3},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/FieldDCSAMGO15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/FornariBHBACCB15,
author = {Chiara Fornari and
Gianfranco Balbo and
Sami M. Halawani and
Omar M. Ba{-}Rukab and
Ab Rahman Ahmad and
Raffaele A. Calogero and
Francesca Cordero and
Marco Beccuti},
title = {A versatile mathematical work-flow to explore how Cancer Stem Cell
fate influences tumor progression},
journal = {{BMC} Syst. Biol.},
volume = {9},
number = {{S-3}},
pages = {S1},
year = {2015},
url = {https://doi.org/10.1186/1752-0509-9-S3-S1},
doi = {10.1186/1752-0509-9-S3-S1},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/FornariBHBACCB15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/GaborB15,
author = {Attila G{\'{a}}bor and
Julio R. Banga},
title = {Robust and efficient parameter estimation in dynamic models of biological
systems},
journal = {{BMC} Syst. Biol.},
volume = {9},
pages = {74},
year = {2015},
url = {https://doi.org/10.1186/s12918-015-0219-2},
doi = {10.1186/S12918-015-0219-2},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/GaborB15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/GaleotaGCBC15,
author = {Eugenia Galeota and
Caius Gavrila and
Filippo Castiglione and
Massimo Bernaschi and
Gianni Cesareni},
title = {The hierarchical organization of natural protein interaction networks
confers self-organization properties on pseudocells},
journal = {{BMC} Syst. Biol.},
volume = {9},
number = {{S-3}},
pages = {S3},
year = {2015},
url = {https://doi.org/10.1186/1752-0509-9-S3-S3},
doi = {10.1186/1752-0509-9-S3-S3},
timestamp = {Sat, 09 Apr 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/GaleotaGCBC15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/GarayDG15,
author = {Christopher Garay and
Jonathan M. Dreyfuss and
James E. Galagan},
title = {Metabolic modeling predicts metabolite changes in Mycobacterium tuberculosis},
journal = {{BMC} Syst. Biol.},
volume = {9},
pages = {57},
year = {2015},
url = {https://doi.org/10.1186/s12918-015-0206-7},
doi = {10.1186/S12918-015-0206-7},
timestamp = {Fri, 09 Apr 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/GarayDG15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/Garcia-Albornoz15,
author = {Manuel Garcia{-}Albornoz and
Jens Nielsen},
title = {Finding directionality and gene-disease predictions in disease associations},
journal = {{BMC} Syst. Biol.},
volume = {9},
pages = {35},
year = {2015},
url = {https://doi.org/10.1186/s12918-015-0184-9},
doi = {10.1186/S12918-015-0184-9},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/Garcia-Albornoz15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/GhanbariLV15,
author = {Mahsa Ghanbari and
Julia Lasserre and
Martin Vingron},
title = {Reconstruction of gene networks using prior knowledge},
journal = {{BMC} Syst. Biol.},
volume = {9},
pages = {84},
year = {2015},
url = {https://doi.org/10.1186/s12918-015-0233-4},
doi = {10.1186/S12918-015-0233-4},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/GhanbariLV15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/GlotovTVPDSIAMZ15,
author = {Andrey S. Glotov and
Evgeny S. Tiys and
Elena S. Vashukova and
Vladimir S. Pakin and
Pavel S. Demenkov and
Olga V. Saik and
Timofey V. Ivanisenko and
Olga N. Arzhanova and
Elena V. Mozgovaya and
Marina S. Zainulina and
Nikolay A. Kolchanov and
Vladislav S. Baranov and
Vladimir A. Ivanisenko},
title = {Molecular association of pathogenetic contributors to pre-eclampsia
(pre-eclampsia associome)},
journal = {{BMC} Syst. Biol.},
volume = {9},
number = {{S-2}},
pages = {S4},
year = {2015},
url = {https://doi.org/10.1186/1752-0509-9-S2-S4},
doi = {10.1186/1752-0509-9-S2-S4},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/GlotovTVPDSIAMZ15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/HasdemirHS15,
author = {Dicle Hasdemir and
Huub C. J. Hoefsloot and
Age K. Smilde},
title = {Validation and selection of {ODE} based systems biology models: how
to arrive at more reliable decisions},
journal = {{BMC} Syst. Biol.},
volume = {9},
pages = {32},
year = {2015},
url = {https://doi.org/10.1186/s12918-015-0180-0},
doi = {10.1186/S12918-015-0180-0},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/HasdemirHS15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/HasegawaMYSMIA15,
author = {Takanori Hasegawa and
Tomoya Mori and
Rui Yamaguchi and
Teppei Shimamura and
Satoru Miyano and
Seiya Imoto and
Tatsuya Akutsu},
title = {Genomic data assimilation using a higher moment filtering technique
for restoration of gene regulatory networks},
journal = {{BMC} Syst. Biol.},
volume = {9},
pages = {14},
year = {2015},
url = {https://doi.org/10.1186/s12918-015-0154-2},
doi = {10.1186/S12918-015-0154-2},
timestamp = {Fri, 09 Apr 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/HasegawaMYSMIA15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/HattoriYW15,
author = {Yuya Hattori and
Akinari Yokoya and
Ritsuko Watanabe},
title = {Cellular automaton-based model for radiation-induced bystander effects},
journal = {{BMC} Syst. Biol.},
volume = {9},
pages = {90},
year = {2015},
url = {https://doi.org/10.1186/s12918-015-0235-2},
doi = {10.1186/S12918-015-0235-2},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/HattoriYW15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/HsiehTCTKHN15,
author = {Wen{-}Tsong Hsieh and
Ke{-}Rung Tzeng and
Jin{-}Shuei Ciou and
Jeffrey J. P. Tsai and
Nilubon Kurubanjerdjit and
Chien{-}Hung Huang and
Ka{-}Lok Ng},
title = {Transcription factor and microRNA-regulated network motifs for cancer
and signal transduction networks},
journal = {{BMC} Syst. Biol.},
volume = {9},
number = {{S-1}},
pages = {S5},
year = {2015},
url = {https://doi.org/10.1186/1752-0509-9-S1-S5},
doi = {10.1186/1752-0509-9-S1-S5},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/HsiehTCTKHN15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/HuangSZZXS15,
author = {Liang{-}Chin Huang and
Ergin Soysal and
W. Jim Zheng and
Zhongming Zhao and
Hua Xu and
Jingchun Sun},
title = {A weighted and integrated drug-target interactome: drug repurposing
for schizophrenia as a use case},
journal = {{BMC} Syst. Biol.},
volume = {9},
number = {{S-4}},
pages = {S2},
year = {2015},
url = {https://doi.org/10.1186/1752-0509-9-S4-S2},
doi = {10.1186/1752-0509-9-S4-S2},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/HuangSZZXS15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/HuangYLZ15,
author = {Lifang Huang and
Zhanjiang Yuan and
Peijiang Liu and
Tianshou Zhou},
title = {Effects of promoter leakage on dynamics of gene expression},
journal = {{BMC} Syst. Biol.},
volume = {9},
pages = {16},
year = {2015},
url = {https://doi.org/10.1186/s12918-015-0157-z},
doi = {10.1186/S12918-015-0157-Z},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/HuangYLZ15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/IntosalmiARMCLS15,
author = {Jukka Intosalmi and
Helena Ahlfors and
Sini Rautio and
Henrik Mannerstr{\"{o}}m and
Zhi Jane Chen and
Riitta Lahesmaa and
Brigitta Stockinger and
Harri L{\"{a}}hdesm{\"{a}}ki},
title = {Analyzing Th17 cell differentiation dynamics using a novel integrative
modeling framework for time-course {RNA} sequencing data},
journal = {{BMC} Syst. Biol.},
volume = {9},
pages = {81},
year = {2015},
url = {https://doi.org/10.1186/s12918-015-0223-6},
doi = {10.1186/S12918-015-0223-6},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/IntosalmiARMCLS15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/IvanisenkoSITID15,
author = {Vladimir A. Ivanisenko and
Olga V. Saik and
Nikita V. Ivanisenko and
Evgeny S. Tiys and
Timofey V. Ivanisenko and
Pavel S. Demenkov and
Nikolay A. Kolchanov},
title = {ANDSystem: an Associative Network Discovery System for automated literature
mining in the field of biology},
journal = {{BMC} Syst. Biol.},
volume = {9},
number = {{S-2}},
pages = {S2},
year = {2015},
url = {https://doi.org/10.1186/1752-0509-9-S2-S2},
doi = {10.1186/1752-0509-9-S2-S2},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcsb/IvanisenkoSITID15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/JeongKWS15,
author = {Hyun{-}hwan Jeong and
So Kim and
Kyubum Wee and
Kyung{-}Ah Sohn},
title = {Investigating the utility of clinical outcome-guided mutual information
network in network-based Cox regression},
journal = {{BMC} Syst. Biol.},
volume = {9},
number = {{S-1}},
pages = {S8},
year = {2015},
url = {https://doi.org/10.1186/1752-0509-9-S1-S8},
doi = {10.1186/1752-0509-9-S1-S8},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/JeongKWS15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/JeongY15,
author = {Hyundoo Jeong and
Byung{-}Jun Yoon},
title = {Accurate multiple network alignment through context-sensitive random
walk},
journal = {{BMC} Syst. Biol.},
volume = {9},
number = {{S-1}},
pages = {S7},
year = {2015},
url = {https://doi.org/10.1186/1752-0509-9-S1-S7},
doi = {10.1186/1752-0509-9-S1-S7},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/JeongY15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/JohnstonSCMS15,
author = {Stuart Johnston and
Esha Shah and
Lisa Chopin and
D. L. Sean McElwain and
Matthew J. Simpson},
title = {Estimating cell diffusivity and cell proliferation rate by interpreting
IncuCyte ZOOM{\texttrademark} assay data using the Fisher-Kolmogorov
model},
journal = {{BMC} Syst. Biol.},
volume = {9},
pages = {38},
year = {2015},
url = {https://doi.org/10.1186/s12918-015-0182-y},
doi = {10.1186/S12918-015-0182-Y},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/JohnstonSCMS15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/KarlssonJDCKC15,
author = {Markus Karlsson and
David Janz{\'{e}}n and
Lucia Durrieu and
Alejandro Colman{-}Lerner and
Maria Kjellsson and
Gunnar Cedersund},
title = {Nonlinear mixed-effects modelling for single cell estimation: when,
why, and how to use it},
journal = {{BMC} Syst. Biol.},
volume = {9},
pages = {52},
year = {2015},
url = {https://doi.org/10.1186/s12918-015-0203-x},
doi = {10.1186/S12918-015-0203-X},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/KarlssonJDCKC15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/KavscekBMN15,
author = {Martin Kavscek and
Govindprasad Bhutada and
Tobias Madl and
Klaus Natter},
title = {Optimization of lipid production with a genome-scale model of \emph{Yarrowia
lipolytica}},
journal = {{BMC} Syst. Biol.},
volume = {9},
pages = {72},
year = {2015},
url = {https://doi.org/10.1186/s12918-015-0217-4},
doi = {10.1186/S12918-015-0217-4},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcsb/KavscekBMN15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/KimJB15,
author = {Jae Kyoung Kim and
Kresimir Josic and
Matthew R. Bennett},
title = {The relationship between stochastic and deterministic quasi-steady
state approximations},
journal = {{BMC} Syst. Biol.},
volume = {9},
pages = {87},
year = {2015},
url = {https://doi.org/10.1186/s12918-015-0218-3},
doi = {10.1186/S12918-015-0218-3},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/KimJB15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/KittasBSGT15,
author = {Aristotelis Kittas and
Am{\'{e}}lie Barozet and
Jekaterina Sereshti and
Niels Grabe and
Sophia Tsoka},
title = {CytoASP: a Cytoscape app for qualitative consistency reasoning, prediction
and repair in biological networks},
journal = {{BMC} Syst. Biol.},
volume = {9},
pages = {34},
year = {2015},
url = {https://doi.org/10.1186/s12918-015-0179-6},
doi = {10.1186/S12918-015-0179-6},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/KittasBSGT15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/KolarWMKWZ15,
author = {Katja Kolar and
Hanna M. Wischhusen and
Konrad M{\"{u}}ller and
Maria Karlsson and
Wilfried Weber and
Matias D. Zurbriggen},
title = {A synthetic mammalian network to compute population borders based
on engineered reciprocal cell-cell communication},
journal = {{BMC} Syst. Biol.},
volume = {9},
pages = {97},
year = {2015},
url = {https://doi.org/10.1186/s12918-015-0252-1},
doi = {10.1186/S12918-015-0252-1},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcsb/KolarWMKWZ15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/KryvenRS15,
author = {Ivan Kryven and
Susanna R{\"{o}}blitz and
Christof Sch{\"{u}}tte},
title = {Solution of the chemical master equation by radial basis functions
approximation with interface tracking},
journal = {{BMC} Syst. Biol.},
volume = {9},
pages = {67},
year = {2015},
url = {https://doi.org/10.1186/s12918-015-0210-y},
doi = {10.1186/S12918-015-0210-Y},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/KryvenRS15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/LakshmananKCLL15,
author = {Meiyappan Lakshmanan and
Tae Yong Kim and
Bevan Kai{-}Sheng Chung and
Sang Yup Lee and
Dong{-}Yup Lee},
title = {Flux-sum analysis identifies metabolite targets for strain improvement},
journal = {{BMC} Syst. Biol.},
volume = {9},
pages = {73},
year = {2015},
url = {https://doi.org/10.1186/s12918-015-0198-3},
doi = {10.1186/S12918-015-0198-3},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/LakshmananKCLL15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/LiV15,
author = {Pu Li and
Quoc Dong Vu},
title = {A simple method for identifying parameter correlations in partially
observed linear dynamic models},
journal = {{BMC} Syst. Biol.},
volume = {9},
pages = {92},
year = {2015},
url = {https://doi.org/10.1186/s12918-015-0234-3},
doi = {10.1186/S12918-015-0234-3},
timestamp = {Mon, 12 Oct 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/LiV15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/LienNSNB15,
author = {Stina K. Lien and
Sebastian Niedenf{\"{u}}hr and
H{\aa}vard Sletta and
Katharina N{\"{o}}h and
Per Bruheim},
title = {Fluxome study of Pseudomonas fluorescens reveals major reorganisation
of carbon flux through central metabolic pathways in response to inactivation
of the anti-sigma factor MucA},
journal = {{BMC} Syst. Biol.},
volume = {9},
pages = {6},
year = {2015},
url = {https://doi.org/10.1186/s12918-015-0148-0},
doi = {10.1186/S12918-015-0148-0},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/LienNSNB15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/ManyamBB15,
author = {Ganiraju Manyam and
Aybike Birerdinc and
Ancha V. Baranova},
title = {{KPP:} {KEGG} Pathway Painter},
journal = {{BMC} Syst. Biol.},
volume = {9},
number = {{S-2}},
pages = {S3},
year = {2015},
url = {https://doi.org/10.1186/1752-0509-9-S2-S3},
doi = {10.1186/1752-0509-9-S2-S3},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/ManyamBB15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/MarinGMKSJSCS15,
author = {Traci L. Marin and
Brendan Gongol and
Marcy Martin and
Stephanie J. King and
Lemar Smith and
David A. Johnson and
Shankar Subramaniam and
Shu Chien and
John Shyy},
title = {Identification of AMP-activated protein kinase targets by a consensus
sequence search of the proteome},
journal = {{BMC} Syst. Biol.},
volume = {9},
pages = {13},
year = {2015},
url = {https://doi.org/10.1186/s12918-015-0156-0},
doi = {10.1186/S12918-015-0156-0},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/MarinGMKSJSCS15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/MarmiessePC15,
author = {Lucas Marmiesse and
R{\'{e}}mi Peyraud and
Ludovic Cottret},
title = {FlexFlux: combining metabolic flux and regulatory network analyses},
journal = {{BMC} Syst. Biol.},
volume = {9},
pages = {93},
year = {2015},
url = {https://doi.org/10.1186/s12918-015-0238-z},
doi = {10.1186/S12918-015-0238-Z},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcsb/MarmiessePC15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/MillardPM15,
author = {Pierre Millard and
Jean{-}Charles Portais and
Pedro Mendes},
title = {Impact of kinetic isotope effects in isotopic studies of metabolic
systems},
journal = {{BMC} Syst. Biol.},
volume = {9},
pages = {64},
year = {2015},
url = {https://doi.org/10.1186/s12918-015-0213-8},
doi = {10.1186/S12918-015-0213-8},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/MillardPM15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/MishraBCZZ15,
author = {Shital K. Mishra and
Sourav S. Bhowmick and
Huey{-}Eng Chua and
Fan Zhang and
Jie Zheng},
title = {Computational cell fate modelling for discovery of rewiring in apoptotic
network for enhanced cancer drug sensitivity},
journal = {{BMC} Syst. Biol.},
volume = {9},
number = {{S-1}},
pages = {S4},
year = {2015},
url = {https://doi.org/10.1186/1752-0509-9-S1-S4},
doi = {10.1186/1752-0509-9-S1-S4},
timestamp = {Wed, 30 Nov 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcsb/MishraBCZZ15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/MitchellGKSKHPS15,
author = {Christopher J. Mitchell and
Derese Getnet and
Min Sik Kim and
Srinivas Manda Srikanth and
Praveen Kumar and
Tai{-}Chung Huang and
Sneha M. Pinto and
Nirujogi Raja Sekhar and
Mio Iwasaki and
Patrick G. Shaw and
Xinyan Wu and
Jun Zhong and
Raghothama Chaerkady and
Arivusudar Marimuthu and
Babylakshmi Muthusamy and
Nandini A. Sahasrabuddhe and
Rajesh Raju and
Caitlyn Bowman and
Ludmila V. Danilova and
Jevon Cutler and
Dhanashree S. Kelkar and
Charles G. Drake and
T. S. Keshava Prasad and
Luigi Marchionni and
Peter N. Murakami and
Alan F. Scott and
Leming Shi and
Jean Thierry{-}Mieg and
Danielle Thierry{-}Mieg and
Rafael A. Irizarry and
Leslie Cope and
Yasushi Ishihama and
Charles Wang and
Harsha Gowda and
Akhilesh Pandey},
title = {A multi-omic analysis of human na{\"{\i}}ve {CD4+} {T} cells},
journal = {{BMC} Syst. Biol.},
volume = {9},
pages = {75},
year = {2015},
url = {https://doi.org/10.1186/s12918-015-0225-4},
doi = {10.1186/S12918-015-0225-4},
timestamp = {Fri, 09 Apr 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/MitchellGKSKHPS15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/MoTZL15,
author = {Wenjuan Mo and
Chao Tong and
Yan Zhang and
Hong Lu},
title = {microRNAs' differential regulations mediate the progress of Human
Papillomavirus (HPV)-induced Cervical Intraepithelial Neoplasia {(CIN)}},
journal = {{BMC} Syst. Biol.},
volume = {9},
pages = {4},
year = {2015},
url = {https://doi.org/10.1186/s12918-015-0145-3},
doi = {10.1186/S12918-015-0145-3},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/MoTZL15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/MohammadiSSG15,
author = {Shahin Mohammadi and
Baharak Saberidokht and
Shankar Subramaniam and
Ananth Grama},
title = {Scope and limitations of yeast as a model organism for studying human
tissue-specific pathways},
journal = {{BMC} Syst. Biol.},
volume = {9},
pages = {96},
year = {2015},
url = {https://doi.org/10.1186/s12918-015-0253-0},
doi = {10.1186/S12918-015-0253-0},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/MohammadiSSG15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/MoriFKAK15,
author = {Tomoya Mori and
Max Fl{\"{o}}ttmann and
Marcus Krantz and
Tatsuya Akutsu and
Edda Klipp},
title = {Stochastic simulation of Boolean rxncon models: towards quantitative
analysis of large signaling networks},
journal = {{BMC} Syst. Biol.},
volume = {9},
pages = {45},
year = {2015},
url = {https://doi.org/10.1186/s12918-015-0193-8},
doi = {10.1186/S12918-015-0193-8},
timestamp = {Fri, 09 Apr 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/MoriFKAK15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/NienaltowskiWLK15,
author = {Karol Nienaltowski and
Michal Wlodarczyk and
Tomasz Lipniacki and
Michal Komorowski},
title = {Clustering reveals limits of parameter identifiability in multi-parameter
models of biochemical dynamics},
journal = {{BMC} Syst. Biol.},
volume = {9},
pages = {65},
year = {2015},
url = {https://doi.org/10.1186/s12918-015-0205-8},
doi = {10.1186/S12918-015-0205-8},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/NienaltowskiWLK15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/OtaMOT15,
author = {Takahide Ota and
Masayo Maeda and
Mayumi Okamoto and
Masaaki Tatsuka},
title = {Positive regulation of Rho GTPase activity by RhoGDIs as a result
of their direct interaction with GAPs},
journal = {{BMC} Syst. Biol.},
volume = {9},
pages = {3},
year = {2015},
url = {https://doi.org/10.1186/s12918-015-0143-5},
doi = {10.1186/S12918-015-0143-5},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/OtaMOT15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/PadiQ15,
author = {Megha Padi and
John Quackenbush},
title = {Integrating transcriptional and protein interaction networks to prioritize
condition-specific master regulators},
journal = {{BMC} Syst. Biol.},
volume = {9},
pages = {80},
year = {2015},
url = {https://doi.org/10.1186/s12918-015-0228-1},
doi = {10.1186/S12918-015-0228-1},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/PadiQ15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/PalmisanoHWJTS15,
author = {Alida Palmisano and
Stefan Hoops and
Layne T. Watson and
Thomas C. Jones Jr and
John J. Tyson and
Clifford A. Shaffer},
title = {JigCell Run Manager {(JC-RM):} a tool for managing large sets of biochemical
model parametrizations},
journal = {{BMC} Syst. Biol.},
volume = {9},
pages = {95},
year = {2015},
url = {https://doi.org/10.1186/s12918-015-0237-0},
doi = {10.1186/S12918-015-0237-0},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/PalmisanoHWJTS15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/ParadisiAC15,
author = {Paolo Paradisi and
Paolo Allegrini and
Davide Chiarugi},
title = {A renewal model for the emergence of anomalous solute crowding in
liposomes},
journal = {{BMC} Syst. Biol.},
volume = {9},
number = {{S-3}},
pages = {S7},
year = {2015},
url = {https://doi.org/10.1186/1752-0509-9-S3-S7},
doi = {10.1186/1752-0509-9-S3-S7},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/ParadisiAC15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/PenagaricanoVSB15,
author = {Francisco Pe{\~{n}}agaricano and
Bruno Valente and
Juan P. Steibel and
Ronald O. Bates and
Catherine W. Ernst and
Hasan Khatib and
Guilherme J. M. Rosa},
title = {Exploring causal networks underlying fat deposition and muscularity
in pigs through the integration of phenotypic, genotypic and transcriptomic
data},
journal = {{BMC} Syst. Biol.},
volume = {9},
pages = {58},
year = {2015},
url = {https://doi.org/10.1186/s12918-015-0207-6},
doi = {10.1186/S12918-015-0207-6},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/PenagaricanoVSB15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/Perez-LanderoSM15,
author = {Sergio P{\'{e}}rez{-}Landero and
Santiago Sandoval{-}Motta and
Claudia Mart{\'{\i}}nez{-}Anaya and
Runying Yang and
Jorge Folch{-}Mallol and
Luz Mart{\'{\i}}nez and
Larissa Ventura and
Karina Guill{\'{e}}n{-}Navarro and
Maximino Aldana{-}Gonz{\'{a}}lez and
Jorge Nieto{-}Sotelo},
title = {Complex regulation of Hsf1-Skn7 activities by the catalytic subunits
of {PKA} in Saccharomyces cerevisiae: experimental and computational
evidences},
journal = {{BMC} Syst. Biol.},
volume = {9},
pages = {42},
year = {2015},
url = {https://doi.org/10.1186/s12918-015-0185-8},
doi = {10.1186/S12918-015-0185-8},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/Perez-LanderoSM15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/PienaarDLK15,
author = {Elsje Pienaar and
V{\'{e}}ronique Dartois and
Jennifer J. Linderman and
Denise E. Kirschner},
title = {\emph{In silico} evaluation and exploration of antibiotic tuberculosis
treatment regimens},
journal = {{BMC} Syst. Biol.},
volume = {9},
pages = {79},
year = {2015},
url = {https://doi.org/10.1186/s12918-015-0221-8},
doi = {10.1186/S12918-015-0221-8},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/PienaarDLK15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/PolitiPZM15,
author = {Nicol{\`{o}} Politi and
Lorenzo Pasotti and
Susanna Zucca and
Paolo Magni},
title = {Modelling the effects of cell-to-cell variability on the output of
interconnected gene networks in bacterial populations},
journal = {{BMC} Syst. Biol.},
volume = {9},
number = {{S-3}},
pages = {S6},
year = {2015},
url = {https://doi.org/10.1186/1752-0509-9-S3-S6},
doi = {10.1186/1752-0509-9-S3-S6},
timestamp = {Sat, 09 Apr 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/PolitiPZM15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/PulvirentiGDPMG15,
author = {Alfredo Pulvirenti and
Rosalba Giugno and
Rosario Distefano and
Giuseppe Pigola and
Misael Mongiov{\`{\i}} and
Girolamo Giudice and
Vera Vendramin and
Alessandro Lombardo and
Federica Cattonaro and
Alfredo Ferro},
title = {A knowledge base for Vitis vinifera functional analysis},
journal = {{BMC} Syst. Biol.},
volume = {9},
number = {{S-3}},
pages = {S5},
year = {2015},
url = {https://doi.org/10.1186/1752-0509-9-S3-S5},
doi = {10.1186/1752-0509-9-S3-S5},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/PulvirentiGDPMG15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/ReedGHN15,
author = {Michael Reed and
Mary Gamble and
Megan Hall and
H. Nijhout},
title = {Mathematical analysis of the regulation of competing methyltransferases},
journal = {{BMC} Syst. Biol.},
volume = {9},
pages = {69},
year = {2015},
url = {https://doi.org/10.1186/s12918-015-0215-6},
doi = {10.1186/S12918-015-0215-6},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/ReedGHN15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/Reyes-GibbyYWYS15,
author = {Cielito Reyes{-}Gibby and
Christine Yuan and
Jian Wang and
Sai{-}Ching Yeung and
Sanjay Shete},
title = {Gene network analysis shows immune-signaling and {ERK1/2} as novel
genetic markers for multiple addiction phenotypes: alcohol, smoking
and opioid addiction},
journal = {{BMC} Syst. Biol.},
volume = {9},
pages = {25},
year = {2015},
url = {https://doi.org/10.1186/s12918-015-0167-x},
doi = {10.1186/S12918-015-0167-X},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/Reyes-GibbyYWYS15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/RickettPHZKBM15,
author = {Lydia M. Rickett and
Nick Pullen and
Matthew Hartley and
Cyril Zipfel and
Sophien Kamoun and
J{\'{o}}zsef Baranyi and
Richard J. Morris},
title = {Incorporating prior knowledge improves detection of differences in
bacterial growth rate},
journal = {{BMC} Syst. Biol.},
volume = {9},
pages = {60},
year = {2015},
url = {https://doi.org/10.1186/s12918-015-0204-9},
doi = {10.1186/S12918-015-0204-9},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/RickettPHZKBM15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/SabetianS15,
author = {Soudabeh Sabetian and
Mohd Shahir Shamsir},
title = {Identification of putative drug targets for human sperm-egg interaction
defect using protein network approach},
journal = {{BMC} Syst. Biol.},
volume = {9},
pages = {37},
year = {2015},
url = {https://doi.org/10.1186/s12918-015-0186-7},
doi = {10.1186/S12918-015-0186-7},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/SabetianS15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/Sands15,
author = {Tim Sands},
title = {Annual acknowledgement of reviewers},
journal = {{BMC} Syst. Biol.},
volume = {9},
pages = {7},
year = {2015},
url = {https://doi.org/10.1186/s12918-015-0150-6},
doi = {10.1186/S12918-015-0150-6},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/Sands15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/SchultzQ15,
author = {Andr{\'{e}} Schultz and
Amina A. Qutub},
title = {Predicting internal cell fluxes at sub-optimal growth},
journal = {{BMC} Syst. Biol.},
volume = {9},
pages = {18},
year = {2015},
url = {https://doi.org/10.1186/s12918-015-0153-3},
doi = {10.1186/S12918-015-0153-3},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcsb/SchultzQ15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/ShahzadMC15,
author = {Khuram Shahzad and
Jay E. Mittenthal and
Gustavo Caetano{-}Anoll{\'{e}}s},
title = {The organization of domains in proteins obeys Menzerath-Altmann's
law of language},
journal = {{BMC} Syst. Biol.},
volume = {9},
pages = {44},
year = {2015},
url = {https://doi.org/10.1186/s12918-015-0192-9},
doi = {10.1186/S12918-015-0192-9},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcsb/ShahzadMC15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/Sharifi-ZarchiT15,
author = {Ali Sharifi{-}Zarchi and
Mehdi Totonchi and
Keynoush Khaloughi and
Razieh Karamzadeh and
Marcos J. Ara{\'{u}}zo{-}Bravo and
Hossein Baharvand and
Ruzbeh Tusserkani and
Hamid Pezeshk and
Hamidreza Chitsaz and
Mehdi Sadeghi},
title = {Increased robustness of early embryogenesis through collective decision-making
by key transcription factors},
journal = {{BMC} Syst. Biol.},
volume = {9},
pages = {23},
year = {2015},
url = {https://doi.org/10.1186/s12918-015-0169-8},
doi = {10.1186/S12918-015-0169-8},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/Sharifi-ZarchiT15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/ShimodaSOIA15,
author = {Takehiro Shimoda and
Shuji Suzuki and
Masahito Ohue and
Takashi Ishida and
Yutaka Akiyama},
title = {Protein-protein docking on hardware accelerators: comparison of {GPU}
and {MIC} architectures},
journal = {{BMC} Syst. Biol.},
volume = {9},
number = {{S-1}},
pages = {S6},
year = {2015},
url = {https://doi.org/10.1186/1752-0509-9-S1-S6},
doi = {10.1186/1752-0509-9-S1-S6},
timestamp = {Mon, 21 Mar 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcsb/ShimodaSOIA15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/SimoesDWE15,
author = {Ricardo de Matos Simoes and
Sabine Dalleau and
Kate E. Williamson and
Frank Emmert{-}Streib},
title = {Urothelial cancer gene regulatory networks inferred from large-scale
RNAseq, Bead and Oligo gene expression data},
journal = {{BMC} Syst. Biol.},
volume = {9},
pages = {21},
year = {2015},
url = {https://doi.org/10.1186/s12918-015-0165-z},
doi = {10.1186/S12918-015-0165-Z},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/SimoesDWE15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/SinCV15,
author = {Celine Sin and
Davide Chiarugi and
Angelo Valleriani},
title = {Single-molecule modeling of mRNA degradation by miRNA: Lessons from
data},
journal = {{BMC} Syst. Biol.},
volume = {9},
number = {{S-3}},
pages = {S2},
year = {2015},
url = {https://doi.org/10.1186/1752-0509-9-S3-S2},
doi = {10.1186/1752-0509-9-S3-S2},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcsb/SinCV15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/SokolenkoA15,
author = {Stanislav Sokolenko and
Marc Aucoin},
title = {A correction method for systematic error in \({}^{\mbox{1}}\) {H-NMR}
time-course data validated through stochastic cell culture simulation},
journal = {{BMC} Syst. Biol.},
volume = {9},
pages = {51},
year = {2015},
url = {https://doi.org/10.1186/s12918-015-0197-4},
doi = {10.1186/S12918-015-0197-4},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/SokolenkoA15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/SongPLA15,
author = {Ruijie Song and
Weilin Peng and
Ping Liu and
Murat Acar},
title = {A cell size- and cell cycle-aware stochastic model for predicting
time-dynamic gene network activity in individual cells},
journal = {{BMC} Syst. Biol.},
volume = {9},
pages = {91},
year = {2015},
url = {https://doi.org/10.1186/s12918-015-0240-5},
doi = {10.1186/S12918-015-0240-5},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/SongPLA15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/SridharanUHL15,
author = {Gautham Vivek Sridharan and
Ehsan Ullah and
Soha Hassoun and
Kyongbum Lee},
title = {Discovery of substrate cycles in large scale metabolic networks using
hierarchical modularity},
journal = {{BMC} Syst. Biol.},
volume = {9},
pages = {5},
year = {2015},
url = {https://doi.org/10.1186/s12918-015-0146-2},
doi = {10.1186/S12918-015-0146-2},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcsb/SridharanUHL15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/StrasserFTM15,
author = {Michael K. Strasser and
Justin Feigelman and
Fabian J. Theis and
Carsten Marr},
title = {Inference of spatiotemporal effects on cellular state transitions
from time-lapse microscopy},
journal = {{BMC} Syst. Biol.},
volume = {9},
pages = {61},
year = {2015},
url = {https://doi.org/10.1186/s12918-015-0208-5},
doi = {10.1186/S12918-015-0208-5},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/StrasserFTM15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/TajparastF15,
author = {Mohammad Tajparast and
Dominic Frigon},
title = {Genome-scale metabolic model of Rhodococcus jostii {RHA1} (iMT1174)
to study the accumulation of storage compounds during nitrogen-limited
condition},
journal = {{BMC} Syst. Biol.},
volume = {9},
pages = {43},
year = {2015},
url = {https://doi.org/10.1186/s12918-015-0190-y},
doi = {10.1186/S12918-015-0190-Y},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/TajparastF15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/TanevskiTKD15,
author = {Jovan Tanevski and
Ljupco Todorovski and
Yannis Kalaidzidis and
Saso Dzeroski},
title = {Domain-specific model selection for structural identification of the
Rab5-Rab7 dynamics in endocytosis},
journal = {{BMC} Syst. Biol.},
volume = {9},
pages = {31},
year = {2015},
url = {https://doi.org/10.1186/s12918-015-0175-x},
doi = {10.1186/S12918-015-0175-X},
timestamp = {Sat, 09 Apr 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/TanevskiTKD15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/TendlerMA15,
author = {Avichai Tendler and
Avraham E. Mayo and
Uri Alon},
title = {Evolutionary tradeoffs, Pareto optimality and the morphology of ammonite
shells},
journal = {{BMC} Syst. Biol.},
volume = {9},
pages = {12},
year = {2015},
url = {https://doi.org/10.1186/s12918-015-0149-z},
doi = {10.1186/S12918-015-0149-Z},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/TendlerMA15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/TripathiFCBBTKL15,
author = {Sushil Tripathi and
{\AA}smund Flobak and
Konika Chawla and
Ana{\"{\i}}s Baudot and
Torunn Bruland and
Liv Thommesen and
Martin Kuiper and
Astrid L{\ae}greid},
title = {The gastrin and cholecystokinin receptors mediated signaling network:
a scaffold for data analysis and new hypotheses on regulatory mechanisms},
journal = {{BMC} Syst. Biol.},
volume = {9},
pages = {40},
year = {2015},
url = {https://doi.org/10.1186/s12918-015-0181-z},
doi = {10.1186/S12918-015-0181-Z},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcsb/TripathiFCBBTKL15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/TsaiLLW15,
author = {Kun{-}Nan Tsai and
Shu{-}Hsi Lin and
Wei{-}Chung Liu and
Daryi Wang},
title = {Inferring microbial interaction network from microbiome data using
{RMN} algorithm},
journal = {{BMC} Syst. Biol.},
volume = {9},
pages = {54},
year = {2015},
url = {https://doi.org/10.1186/s12918-015-0199-2},
doi = {10.1186/S12918-015-0199-2},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/TsaiLLW15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/UdathaTSOAP15,
author = {D. B. R. K. Gupta Udatha and
Evangelos Topakas and
Margarita Salazar and
Lisbeth Olsson and
Mikael R. Andersen and
Gianni Panagiotou},
title = {Deciphering the signaling mechanisms of the plant cell wall degradation
machinery in \emph{Aspergillus oryzae}},
journal = {{BMC} Syst. Biol.},
volume = {9},
pages = {77},
year = {2015},
url = {https://doi.org/10.1186/s12918-015-0224-5},
doi = {10.1186/S12918-015-0224-5},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/UdathaTSOAP15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/VillaverdeHSB0C15,
author = {Alejandro Fern{\'{a}}ndez Villaverde and
David Henriques and
Kieran Smallbone and
Sophia Bongard and
Joachim Schmid and
Damjan Cicin{-}Sain and
Anton Crombach and
Julio Saez{-}Rodriguez and
Klaus Mauch and
Eva Balsa{-}Canto and
Pedro Mendes and
Johannes Jaeger and
Julio R. Banga},
title = {BioPreDyn-bench: a suite of benchmark problems for dynamic modelling
in systems biology},
journal = {{BMC} Syst. Biol.},
volume = {9},
pages = {8},
year = {2015},
url = {https://doi.org/10.1186/s12918-015-0144-4},
doi = {10.1186/S12918-015-0144-4},
timestamp = {Sat, 09 Apr 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/VillaverdeHSB0C15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/WangCM15,
author = {Zichen Wang and
Neil R. Clark and
Avi Ma'ayan},
title = {Dynamics of the discovery process of protein-protein interactions
from low content studies},
journal = {{BMC} Syst. Biol.},
volume = {9},
pages = {26},
year = {2015},
url = {https://doi.org/10.1186/s12918-015-0173-z},
doi = {10.1186/S12918-015-0173-Z},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/WangCM15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/WangKW15,
author = {Qing Wang and
David J. Klinke II and
Zhijun Wang},
title = {{CD8} \({}^{\mbox{+}}\) {T} cell response to adenovirusvaccination
and subsequent suppression of tumor growth: modeling, simulation and
analysis},
journal = {{BMC} Syst. Biol.},
volume = {9},
pages = {27},
year = {2015},
url = {https://doi.org/10.1186/s12918-015-0168-9},
doi = {10.1186/S12918-015-0168-9},
timestamp = {Tue, 18 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/WangKW15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/WangLLDH15,
author = {Caihua Wang and
Juan Liu and
Fei Luo and
Zixing Deng and
Qian{-}Nan Hu},
title = {Predicting target-ligand interactions using protein ligand-binding
site and ligand substructures},
journal = {{BMC} Syst. Biol.},
volume = {9},
number = {{S-1}},
pages = {S2},
year = {2015},
url = {https://doi.org/10.1186/1752-0509-9-S1-S2},
doi = {10.1186/1752-0509-9-S1-S2},
timestamp = {Tue, 21 Jun 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/WangLLDH15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/WangLLLZJYLGZWW15,
author = {Li{-}Ying Wang and
Jun Liu and
Yuan Li and
Bing Li and
Yingying Zhang and
Zhi{-}Wei Jing and
Ya{-}Nan Yu and
Hai{-}Xia Li and
Shan{-}Shan Guo and
Yi{-}Jun Zhao and
Zhong Wang and
Yongyan Wang},
title = {Time-dependent variation of pathways and networks in a 24-hour window
after cerebral ischemia-reperfusion injury},
journal = {{BMC} Syst. Biol.},
volume = {9},
pages = {11},
year = {2015},
url = {https://doi.org/10.1186/s12918-015-0152-4},
doi = {10.1186/S12918-015-0152-4},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/WangLLLZJYLGZWW15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/WangYPLJMY15,
author = {Likun Wang and
Luhe Yang and
Zuohan Peng and
Dan Lu and
Yan Jin and
Michael McNutt and
Yuxin Yin},
title = {cisPath: an R/Bioconductor package for cloud users for visualization
and management of functional protein interaction networks},
journal = {{BMC} Syst. Biol.},
volume = {9},
number = {{S-1}},
pages = {S1},
year = {2015},
url = {https://doi.org/10.1186/1752-0509-9-S1-S1},
doi = {10.1186/1752-0509-9-S1-S1},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/WangYPLJMY15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/WeberHOHR15,
author = {Patrick Weber and
Mariana Hornjik and
Monilola A. Olayioye and
Angelika Hausser and
Nicole Radde},
title = {A computational model of {PKD} and {CERT} interactions at the trans-Golgi
network of mammalian cells},
journal = {{BMC} Syst. Biol.},
volume = {9},
pages = {9},
year = {2015},
url = {https://doi.org/10.1186/s12918-015-0147-1},
doi = {10.1186/S12918-015-0147-1},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/WeberHOHR15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/WieczorekMFGZI15,
author = {Jakob Wieczorek and
Rahuman S. Malik{-}Sheriff and
Yessica Fermin and
Hern{\'{a}}n E. Grecco and
Eli Zamir and
Katja Ickstadt},
title = {Uncovering distinct protein-network topologies in heterogeneous cell
populations},
journal = {{BMC} Syst. Biol.},
volume = {9},
pages = {24},
year = {2015},
url = {https://doi.org/10.1186/s12918-015-0170-2},
doi = {10.1186/S12918-015-0170-2},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/WieczorekMFGZI15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/WolstencroftOKN15,
author = {Katherine Wolstencroft and
Stuart Owen and
Olga Krebs and
Quyen Nguyen and
Natalie J. Stanford and
Martin Golebiewski and
Andreas Weidemann and
Meik Bittkowski and
Lihua An and
David Shockley and
Jacky L. Snoep and
Wolfgang M{\"{u}}ller and
Carole A. Goble},
title = {{SEEK:} a systems biology data and model management platform},
journal = {{BMC} Syst. Biol.},
volume = {9},
pages = {33},
year = {2015},
url = {https://doi.org/10.1186/s12918-015-0174-y},
doi = {10.1186/S12918-015-0174-Y},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/WolstencroftOKN15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/WronowskaCNG15,
author = {Weronika Wronowska and
Agata Charzynska and
Karol Nienaltowski and
Anna Gambin},
title = {Computational modeling of sphingolipid metabolism},
journal = {{BMC} Syst. Biol.},
volume = {9},
pages = {47},
year = {2015},
url = {https://doi.org/10.1186/s12918-015-0176-9},
doi = {10.1186/S12918-015-0176-9},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/WronowskaCNG15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/WuWLYLS15,
author = {Qingyao Wu and
Zhenyu Wang and
Chunshan Li and
Yunming Ye and
Yueping Li and
Ning Sun},
title = {Protein functional properties prediction in sparsely-label {PPI} networks
through regularized non-negative matrix factorization},
journal = {{BMC} Syst. Biol.},
volume = {9},
number = {{S-1}},
pages = {S9},
year = {2015},
url = {https://doi.org/10.1186/1752-0509-9-S1-S9},
doi = {10.1186/1752-0509-9-S1-S9},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/WuWLYLS15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/YeXCCCL15,
author = {Chao Ye and
Nan Xu and
Haiqin Chen and
Yong Q. Chen and
Wei Chen and
Liming Liu},
title = {Reconstruction and analysis of a genome-scale metabolic model of the
oleaginous fungus Mortierella alpina},
journal = {{BMC} Syst. Biol.},
volume = {9},
pages = {1},
year = {2015},
url = {https://doi.org/10.1186/s12918-014-0137-8},
doi = {10.1186/S12918-014-0137-8},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/YeXCCCL15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/YinGMGS15,
author = {Weiwei Yin and
Swetha Garimalla and
Alberto Moreno and
Mary R. Galinski and
Mark P. Styczynski},
title = {A tree-like Bayesian structure learning algorithm for small-sample
datasets from complex biological model systems},
journal = {{BMC} Syst. Biol.},
volume = {9},
pages = {49},
year = {2015},
url = {https://doi.org/10.1186/s12918-015-0194-7},
doi = {10.1186/S12918-015-0194-7},
timestamp = {Wed, 17 Feb 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcsb/YinGMGS15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/YousefSSSHK15,
author = {Kaveh Yousef and
Adam Streck and
Christof Sch{\"{u}}tte and
Heike Siebert and
Regine Hengge and
Max von Kleist},
title = {Logical-continuous modelling of post-translationally regulated bistability
of curli fiber expression in Escherichia coli},
journal = {{BMC} Syst. Biol.},
volume = {9},
pages = {39},
year = {2015},
url = {https://doi.org/10.1186/s12918-015-0183-x},
doi = {10.1186/S12918-015-0183-X},
timestamp = {Mon, 05 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcsb/YousefSSSHK15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/YousofshahiMWLH15,
author = {Mona Yousofshahi and
Sara Manteiga and
Charmian Wu and
Kyongbum Lee and
Soha Hassoun},
title = {{PROXIMAL:} a method for Prediction of Xenobiotic Metabolism},
journal = {{BMC} Syst. Biol.},
volume = {9},
pages = {94},
year = {2015},
url = {https://doi.org/10.1186/s12918-015-0241-4},
doi = {10.1186/S12918-015-0241-4},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcsb/YousofshahiMWLH15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/YuZDG15,
author = {Guo{-}Xian Yu and
Hailong Zhu and
Carlotta Domeniconi and
Maozu Guo},
title = {Integrating multiple networks for protein function prediction},
journal = {{BMC} Syst. Biol.},
volume = {9},
number = {{S-1}},
pages = {S3},
year = {2015},
url = {https://doi.org/10.1186/1752-0509-9-S1-S3},
doi = {10.1186/1752-0509-9-S1-S3},
timestamp = {Thu, 12 Nov 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcsb/YuZDG15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/ZhangKD15,
author = {Weiruo Zhang and
Ritesh Kolte and
David L. Dill},
title = {Towards in vivo estimation of reaction kinetics using high-throughput
metabolomics data: a maximum likelihood approach},
journal = {{BMC} Syst. Biol.},
volume = {9},
pages = {66},
year = {2015},
url = {https://doi.org/10.1186/s12918-015-0214-7},
doi = {10.1186/S12918-015-0214-7},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/ZhangKD15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/ZhukovaS15,
author = {Anna Zhukova and
David James Sherman},
title = {Mimoza: web-based semantic zooming and navigation in metabolic networks},
journal = {{BMC} Syst. Biol.},
volume = {9},
pages = {10},
year = {2015},
url = {https://doi.org/10.1186/s12918-015-0151-5},
doi = {10.1186/S12918-015-0151-5},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/ZhukovaS15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/AbateZFAWFLIIR14,
author = {Francesco Abate and
Sakellarios Zairis and
Elisa Ficarra and
Andrea Acquaviva and
Chris H. Wiggins and
Veronique Frattini and
Anna Lasorella and
Antonio Iavarone and
Giorgio Inghirami and
Raul Rabadan},
title = {Pegasus: a comprehensive annotation and prediction tool for detection
of driver gene fusions in cancer},
journal = {{BMC} Syst. Biol.},
volume = {8},
pages = {97},
year = {2014},
url = {https://doi.org/10.1186/s12918-014-0097-z},
doi = {10.1186/S12918-014-0097-Z},
timestamp = {Wed, 17 May 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/AbateZFAWFLIIR14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/Abdou-ArbiLMSB14,
author = {Oumarou Abdou{-}Arbi and
Sophie Lemosquet and
Jaap Van Milgen and
Anne Siegel and
J{\'{e}}r{\'{e}}mie Bourdon},
title = {Exploring metabolism flexibility in complex organisms through quantitative
study of precursor sets for system outputs},
journal = {{BMC} Syst. Biol.},
volume = {8},
pages = {8},
year = {2014},
url = {https://doi.org/10.1186/1752-0509-8-8},
doi = {10.1186/1752-0509-8-8},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/Abdou-ArbiLMSB14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/AbnaofMWMSLSHWZWF14,
author = {Khalid Abnaof and
Nikhil Mallela and
Gudrun Walenda and
Steffen Meurer and
Kristin Ser{\'{e}} and
Qiong Lin and
Bert Smeets and
Kurt Hoffmann and
Wolfgang Wagner and
Martin Zenke and
Ralf Weiskirchen and
Holger Fr{\"{o}}hlich},
title = {TGF-beta stimulation in human and murine cells reveals commonly affected
biological processes and pathways at transcription level},
journal = {{BMC} Syst. Biol.},
volume = {8},
pages = {55},
year = {2014},
url = {https://doi.org/10.1186/1752-0509-8-55},
doi = {10.1186/1752-0509-8-55},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/AbnaofMWMSLSHWZWF14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/AidelbergTRDBA14,
author = {Guy Aidelberg and
Benjamin D. Towbin and
Daphna Rothschild and
Erez Dekel and
Anat Bren and
Uri Alon},
title = {Hierarchy of non-glucose sugars in Escherichia coli},
journal = {{BMC} Syst. Biol.},
volume = {8},
pages = {133},
year = {2014},
url = {https://doi.org/10.1186/s12918-014-0133-z},
doi = {10.1186/S12918-014-0133-Z},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/AidelbergTRDBA14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/AlberichLSST14,
author = {Ricardo Alberich and
Merc{\`{e}} Llabr{\'{e}}s and
David S{\'{a}}nchez and
Marta Simeoni and
Marc Tuduri},
title = {MP-Align: alignment of metabolic pathways},
journal = {{BMC} Syst. Biol.},
volume = {8},
pages = {58},
year = {2014},
url = {https://doi.org/10.1186/1752-0509-8-58},
doi = {10.1186/1752-0509-8-58},
timestamp = {Tue, 29 Dec 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcsb/AlberichLSST14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/AlcarazPBBJCADB14,
author = {Nicolas Alcaraz and
Josch Pauling and
Richa Batra and
Eudes Barbosa and
Alexander Junge and
Anne Christensen and
Vasco Ariston de Carvalho Azevedo and
Henrik J. Ditzel and
Jan Baumbach},
title = {KeyPathwayMiner 4.0: condition-specific pathway analysis by combining
multiple omics studies and networks with Cytoscape},
journal = {{BMC} Syst. Biol.},
volume = {8},
pages = {99},
year = {2014},
url = {https://doi.org/10.1186/s12918-014-0099-x},
doi = {10.1186/S12918-014-0099-X},
timestamp = {Wed, 24 May 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/AlcarazPBBJCADB14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/AndrieuxBT14,
author = {Geoffroy Andrieux and
Michel Le Borgne and
Nathalie Th{\'{e}}ret},
title = {An integrative modeling framework reveals plasticity of TGF-{\(\beta\)}
signaling},
journal = {{BMC} Syst. Biol.},
volume = {8},
pages = {30},
year = {2014},
url = {https://doi.org/10.1186/1752-0509-8-30},
doi = {10.1186/1752-0509-8-30},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/AndrieuxBT14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/AungTRT14,
author = {Hnin H. Aung and
Athanasios Tsoukalas and
John C. Rutledge and
Ilias Tagkopoulos},
title = {A systems biology analysis of brain microvascular endothelial cell
lipotoxicity},
journal = {{BMC} Syst. Biol.},
volume = {8},
pages = {80},
year = {2014},
url = {https://doi.org/10.1186/1752-0509-8-80},
doi = {10.1186/1752-0509-8-80},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/AungTRT14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/AwadC14,
author = {Sherine Awad and
Jin Chen},
title = {Inferring transcription factor collaborations in gene regulatory networks},
journal = {{BMC} Syst. Biol.},
volume = {8},
number = {{S-1}},
pages = {S1},
year = {2014},
url = {https://doi.org/10.1186/1752-0509-8-S1-S1},
doi = {10.1186/1752-0509-8-S1-S1},
timestamp = {Tue, 16 Aug 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/AwadC14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/BarterSMY14,
author = {Rebecca L. Barter and
Sarah{-}Jane Schramm and
Graham J. Mann and
Yee Hwa Yang},
title = {Network-based biomarkers enhance classical approaches to prognostic
gene expression signatures},
journal = {{BMC} Syst. Biol.},
volume = {8},
number = {{S-4}},
pages = {S5},
year = {2014},
url = {https://doi.org/10.1186/1752-0509-8-S4-S5},
doi = {10.1186/1752-0509-8-S4-S5},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/BarterSMY14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/BarveHMW14,
author = {Aditya Barve and
Sayed{-}Rzgar Hosseini and
Olivier C. Martin and
Andreas Wagner},
title = {Historical contingency and the gradual evolution of metabolic properties
in central carbon and genome-scale metabolisms},
journal = {{BMC} Syst. Biol.},
volume = {8},
pages = {48},
year = {2014},
url = {https://doi.org/10.1186/1752-0509-8-48},
doi = {10.1186/1752-0509-8-48},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/BarveHMW14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/BittigMNSU14,
author = {Arne T. Bittig and
Claudia Matschegewski and
J. Barbara Nebe and
Susanne St{\"{a}}hlke and
Adelinde M. Uhrmacher},
title = {Membrane related dynamics and the formation of actin in cells growing
on micro-topographies: a spatial computational model},
journal = {{BMC} Syst. Biol.},
volume = {8},
pages = {106},
year = {2014},
url = {https://doi.org/10.1186/s12918-014-0106-2},
doi = {10.1186/S12918-014-0106-2},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/BittigMNSU14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/BlanchardCL14,
author = {Andrew E. Blanchard and
Venhar Celik and
Ting Lu},
title = {Extinction, coexistence, and localized patterns of a bacterial population
with contact-dependent inhibition},
journal = {{BMC} Syst. Biol.},
volume = {8},
pages = {23},
year = {2014},
url = {https://doi.org/10.1186/1752-0509-8-23},
doi = {10.1186/1752-0509-8-23},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcsb/BlanchardCL14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/BlavyGLMS14,
author = {Pierre Blavy and
Florence Gondret and
Sandrine Lagarrigue and
Jaap Van Milgen and
Anne Siegel},
title = {Using a large-scale knowledge database on reactions and regulations
to propose key upstream regulators of various sets of molecules participating
in cell metabolism},
journal = {{BMC} Syst. Biol.},
volume = {8},
pages = {32},
year = {2014},
url = {https://doi.org/10.1186/1752-0509-8-32},
doi = {10.1186/1752-0509-8-32},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/BlavyGLMS14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/BosqueFPFE14,
author = {Gabriel Bosque and
Abel Folch{-}Fortuny and
Jes{\'{u}}s Pic{\'{o}} and
Alberto Ferrer and
Santiago F. Elena},
title = {Topology analysis and visualization of Potyvirus protein-protein interaction
network},
journal = {{BMC} Syst. Biol.},
volume = {8},
pages = {129},
year = {2014},
url = {https://doi.org/10.1186/s12918-014-0129-8},
doi = {10.1186/S12918-014-0129-8},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/BosqueFPFE14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/CaberlottoN14,
author = {Laura Caberlotto and
Thanh{-}Phuong Nguyen},
title = {A systems biology investigation of neurodegenerative dementia reveals
a pivotal role of autophagy},
journal = {{BMC} Syst. Biol.},
volume = {8},
pages = {65},
year = {2014},
url = {https://doi.org/10.1186/1752-0509-8-65},
doi = {10.1186/1752-0509-8-65},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/CaberlottoN14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/CampbellA14,
author = {Colin Campbell and
R{\'{e}}ka Albert},
title = {Stabilization of perturbed Boolean network attractors through compensatory
interactions},
journal = {{BMC} Syst. Biol.},
volume = {8},
pages = {53},
year = {2014},
url = {https://doi.org/10.1186/1752-0509-8-53},
doi = {10.1186/1752-0509-8-53},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/CampbellA14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/Cardelli14,
author = {Luca Cardelli},
title = {Morphisms of reaction networks that couple structure to function},
journal = {{BMC} Syst. Biol.},
volume = {8},
pages = {84},
year = {2014},
url = {https://doi.org/10.1186/1752-0509-8-84},
doi = {10.1186/1752-0509-8-84},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/Cardelli14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/CarreiraEMVPTRR14,
author = {Rafael Carreira and
Pedro Evangelista and
Paulo Maia and
Paulo Vila{\c{c}}a and
Marcellinus Pont and
Jean{-}Fran{\c{c}}ois Tomb and
Isabel Rocha and
Miguel Rocha},
title = {{CBFA:} phenotype prediction integrating metabolic models with constraints
derived from experimental data},
journal = {{BMC} Syst. Biol.},
volume = {8},
pages = {123},
year = {2014},
url = {https://doi.org/10.1186/s12918-014-0123-1},
doi = {10.1186/S12918-014-0123-1},
timestamp = {Wed, 12 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/CarreiraEMVPTRR14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/ChenJZJ14,
author = {Yong Chen and
Thibault Jacquemin and
Shuyan Zhang and
Rui Jiang},
title = {Prioritizing protein complexes implicated in human diseases by network
optimization},
journal = {{BMC} Syst. Biol.},
volume = {8},
number = {{S-1}},
pages = {S2},
year = {2014},
url = {https://doi.org/10.1186/1752-0509-8-S1-S2},
doi = {10.1186/1752-0509-8-S1-S2},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/ChenJZJ14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/ChenMZLZ14,
author = {Haifen Chen and
Piyushkumar A. Mundra and
Li Na Zhao and
Feng Lin and
Jie Zheng},
title = {Highly sensitive inference of time-delayed gene regulation by network
deconvolution},
journal = {{BMC} Syst. Biol.},
volume = {8},
number = {{S-4}},
pages = {S6},
year = {2014},
url = {https://doi.org/10.1186/1752-0509-8-S4-S6},
doi = {10.1186/1752-0509-8-S4-S6},
timestamp = {Mon, 07 Jun 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/ChenMZLZ14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/ChengAZM14,
author = {Hsueh{-}Chien Cheng and
Bastian Robert Angermann and
Fengkai Zhang and
Martin Meier{-}Schellersheim},
title = {NetworkViewer: visualizing biochemical reaction networks with embedded
rendering of molecular interaction rules},
journal = {{BMC} Syst. Biol.},
volume = {8},
pages = {70},
year = {2014},
url = {https://doi.org/10.1186/1752-0509-8-70},
doi = {10.1186/1752-0509-8-70},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/ChengAZM14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/ChiangLCH14,
author = {Austin W. T. Chiang and
Wei{-}Chung Liu and
Pep Charusanti and
Ming{-}Jing Hwang},
title = {Understanding system dynamics of an adaptive enzyme network from globally
profiled kinetic parameters},
journal = {{BMC} Syst. Biol.},
volume = {8},
pages = {4},
year = {2014},
url = {https://doi.org/10.1186/1752-0509-8-4},
doi = {10.1186/1752-0509-8-4},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/ChiangLCH14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/ChinCWHKL14,
author = {Chia{-}Hao Chin and
Shu{-}Hwa Chen and
Hsin{-}Hung Wu and
Chin{-}Wen Ho and
Ming{-}Tat Ko and
Chung{-}Yen Lin},
title = {cytoHubba: identifying hub objects and sub-networks from complex interactome},
journal = {{BMC} Syst. Biol.},
volume = {8},
number = {{S-4}},
pages = {S11},
year = {2014},
url = {https://doi.org/10.1186/1752-0509-8-S4-S11},
doi = {10.1186/1752-0509-8-S4-S11},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/ChinCWHKL14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/ChristadorePKS14,
author = {Lisa M. Christadore and
Lisa Pham and
Eric D. Kolaczyk and
Scott E. Schaus},
title = {Improvement of experimental testing and network training conditions
with genome-wide microarrays for more accurate predictions of drug
gene targets},
journal = {{BMC} Syst. Biol.},
volume = {8},
pages = {7},
year = {2014},
url = {https://doi.org/10.1186/1752-0509-8-7},
doi = {10.1186/1752-0509-8-7},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/ChristadorePKS14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/ChuHCCRLBRLQS14,
author = {Jen{-}hwa Chu and
Craig P. Hersh and
Peter J. Castaldi and
Michael H. Cho and
Benjamin A. Raby and
Nan M. Laird and
Russell Bowler and
Stephen I. Rennard and
Joseph Loscalzo and
John Quackenbush and
Edwin K. Silverman},
title = {Analyzing networks of phenotypes in complex diseases: methodology
and applications in {COPD}},
journal = {{BMC} Syst. Biol.},
volume = {8},
pages = {78},
year = {2014},
url = {https://doi.org/10.1186/1752-0509-8-78},
doi = {10.1186/1752-0509-8-78},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/ChuHCCRLBRLQS14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/ChuangL14,
author = {Chia{-}Hua Chuang and
Chun{-}Liang Lin},
title = {Synthesizing genetic sequential logic circuit with clock pulse generator},
journal = {{BMC} Syst. Biol.},
volume = {8},
pages = {63},
year = {2014},
url = {https://doi.org/10.1186/1752-0509-8-63},
doi = {10.1186/1752-0509-8-63},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/ChuangL14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/CoelhoAMPRCBO14,
author = {Edgar D. Coelho and
Joel Arrais and
S{\'{e}}rgio Matos and
Carlos Pereira and
Nuno Rosa and
Maria Jos{\'{e}} Correia and
Marlene Barros and
Jos{\'{e}} Lu{\'{\i}}s Oliveira},
title = {Computational prediction of the human-microbial oral interactome},
journal = {{BMC} Syst. Biol.},
volume = {8},
pages = {24},
year = {2014},
url = {https://doi.org/10.1186/1752-0509-8-24},
doi = {10.1186/1752-0509-8-24},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/CoelhoAMPRCBO14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/ConesaM14,
author = {Ana Conesa and
Ali Mortazavi},
title = {The common ground of genomics and systems biology},
journal = {{BMC} Syst. Biol.},
volume = {8},
number = {{S-2}},
pages = {S1},
year = {2014},
url = {https://doi.org/10.1186/1752-0509-8-S2-S1},
doi = {10.1186/1752-0509-8-S2-S1},
timestamp = {Fri, 17 Nov 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcsb/ConesaM14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/CostaVV14,
author = {Rafael S. Costa and
Andr{\'{e}} Ver{\'{\i}}ssimo and
Susana Vinga},
title = {KiMoSys: a web-based repository of experimental data for KInetic MOdels
of biological SYStems},
journal = {{BMC} Syst. Biol.},
volume = {8},
pages = {85},
year = {2014},
url = {https://doi.org/10.1186/s12918-014-0085-3},
doi = {10.1186/S12918-014-0085-3},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/CostaVV14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/DamSSS14,
author = {Jesse C. J. van Dam and
Peter J. Schaap and
V{\'{\i}}tor A. P. Martins dos Santos and
Mar{\'{\i}}a Su{\'{a}}rez{-}Diez},
title = {Integration of heterogeneous molecular networks to unravel gene-regulation
in Mycobacterium tuberculosis},
journal = {{BMC} Syst. Biol.},
volume = {8},
pages = {111},
year = {2014},
url = {https://doi.org/10.1186/s12918-014-0111-5},
doi = {10.1186/S12918-014-0111-5},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/DamSSS14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/DazardSDBB14,
author = {Jean{-}Eudes J. Dazard and
Yana Sandlers and
Stephanie K. Doerner and
Nathan A. Berger and
Henri Brunengraber},
title = {Metabolomics of Apc \({}^{\mbox{ Min/+ }}\) mice genetically susceptible
to intestinal cancer},
journal = {{BMC} Syst. Biol.},
volume = {8},
pages = {72},
year = {2014},
url = {https://doi.org/10.1186/1752-0509-8-72},
doi = {10.1186/1752-0509-8-72},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/DazardSDBB14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/DempseyA14,
author = {Kathryn Dempsey and
Hesham H. Ali},
title = {Identifying aging-related genes in mouse hippocampus using gateway
nodes},
journal = {{BMC} Syst. Biol.},
volume = {8},
pages = {62},
year = {2014},
url = {https://doi.org/10.1186/1752-0509-8-62},
doi = {10.1186/1752-0509-8-62},
timestamp = {Fri, 11 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/DempseyA14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/DonitzW14,
author = {J{\"{u}}rgen D{\"{o}}nitz and
Edgar Wingender},
title = {EndoNet: an information resource about the intercellular signaling
network},
journal = {{BMC} Syst. Biol.},
volume = {8},
pages = {49},
year = {2014},
url = {https://doi.org/10.1186/1752-0509-8-49},
doi = {10.1186/1752-0509-8-49},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/DonitzW14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/El-KebirBHK14,
author = {Mohammed El{-}Kebir and
Bernd W. Brandt and
Jaap Heringa and
Gunnar W. Klau},
title = {A web server for protein-protein interaction network querying},
journal = {{BMC} Syst. Biol.},
volume = {8},
pages = {40},
year = {2014},
url = {https://doi.org/10.1186/1752-0509-8-40},
doi = {10.1186/1752-0509-8-40},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/El-KebirBHK14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/El-SemmanKSNSN14,
author = {Ibrahim E. El{-}Semman and
Fredrik H. Karlsson and
Saeed Shoaie and
Intawat Nookaew and
Taysir Hassan A. Soliman and
Jens Nielsen},
title = {Genome-scale metabolic reconstructions of Bifidobacterium adolescentis
{L2-32} and Faecalibacterium prausnitzii {A2-165} and their interaction},
journal = {{BMC} Syst. Biol.},
volume = {8},
pages = {41},
year = {2014},
url = {https://doi.org/10.1186/1752-0509-8-41},
doi = {10.1186/1752-0509-8-41},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/El-SemmanKSNSN14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/Espinosa-SotoIAAF14,
author = {Carlos Espinosa{-}Soto and
Richard G. H. Immink and
Gerco C. Angenent and
Elena R. {\'{A}}lvarez{-}Buylla and
Stefan de Folter},
title = {Tetramer formation in Arabidopsis {MADS} domain proteins: analysis
of a protein-protein interaction network},
journal = {{BMC} Syst. Biol.},
volume = {8},
pages = {9},
year = {2014},
url = {https://doi.org/10.1186/1752-0509-8-9},
doi = {10.1186/1752-0509-8-9},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/Espinosa-SotoIAAF14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/FadhalGM14,
author = {Emad Fadhal and
Junaid Gamieldien and
Eric C. Mwambene},
title = {Protein interaction networks as metric spaces: a novel perspective
on distribution of hubs},
journal = {{BMC} Syst. Biol.},
volume = {8},
pages = {6},
year = {2014},
url = {https://doi.org/10.1186/1752-0509-8-6},
doi = {10.1186/1752-0509-8-6},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcsb/FadhalGM14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/FadhalMG14,
author = {Emad Fadhal and
Eric C. Mwambene and
Junaid Gamieldien},
title = {Modelling human protein interaction networks as metric spaces has
potential in disease research and drug target discovery},
journal = {{BMC} Syst. Biol.},
volume = {8},
pages = {68},
year = {2014},
url = {https://doi.org/10.1186/1752-0509-8-68},
doi = {10.1186/1752-0509-8-68},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcsb/FadhalMG14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/FarhangmehrMTS14,
author = {Farzaneh Farhangmehr and
Mano Ram Maurya and
Daniel M. Tartakovsky and
Shankar Subramaniam},
title = {Information theoretic approach to complex biological network reconstruction:
application to cytokine release in {RAW} 264.7 macrophages},
journal = {{BMC} Syst. Biol.},
volume = {8},
pages = {77},
year = {2014},
url = {https://doi.org/10.1186/1752-0509-8-77},
doi = {10.1186/1752-0509-8-77},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/FarhangmehrMTS14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/GanegodaWWL14,
author = {Gamage Upeksha Ganegoda and
Jianxin Wang and
Fang{-}Xiang Wu and
Min Li},
title = {Prediction of disease genes using tissue-specified gene-gene network},
journal = {{BMC} Syst. Biol.},
volume = {8},
number = {{S-3}},
pages = {S3},
year = {2014},
url = {https://doi.org/10.1186/1752-0509-8-S3-S3},
doi = {10.1186/1752-0509-8-S3-S3},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/GanegodaWWL14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/GarciaDCS14,
author = {Benjamin Garcia and
Gargi Datta and
Gregory P. Cosgrove and
Michael Strong},
title = {Network and matrix analysis of the respiratory disease interactome},
journal = {{BMC} Syst. Biol.},
volume = {8},
pages = {34},
year = {2014},
url = {https://doi.org/10.1186/1752-0509-8-34},
doi = {10.1186/1752-0509-8-34},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/GarciaDCS14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/GerinMF14,
author = {St{\'{e}}phanie G{\'{e}}rin and
Gr{\'{e}}gory Mathy and
Fabrice Franck},
title = {Modeling the dependence of respiration and photosynthesis upon light,
acetate, carbon dioxide, nitrate and ammonium in Chlamydomonas reinhardtii
using design of experiments and multiple regression},
journal = {{BMC} Syst. Biol.},
volume = {8},
pages = {96},
year = {2014},
url = {https://doi.org/10.1186/s12918-014-0096-0},
doi = {10.1186/S12918-014-0096-0},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/GerinMF14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/GlassQSCRYD14,
author = {Kimberly Glass and
John Quackenbush and
Edwin K. Silverman and
Bartolome Celli and
Stephen I. Rennard and
Guo{-}Cheng Yuan and
Dawn L. DeMeo},
title = {Sexually-dimorphic targeting of functionally-related genes in {COPD}},
journal = {{BMC} Syst. Biol.},
volume = {8},
pages = {118},
year = {2014},
url = {https://doi.org/10.1186/s12918-014-0118-y},
doi = {10.1186/S12918-014-0118-Y},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/GlassQSCRYD14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/Gomez-CabreroAMTMGBBCT14,
author = {David Gomez{-}Cabrero and
Imad Abugessaisa and
Dieter Maier and
Andrew E. Teschendorff and
Matthias Merkenschlager and
Andreas Gisel and
Esteban Ballestar and
Erik Bongcam{-}Rudloff and
Ana Conesa and
Jesper Tegn{\'{e}}r},
title = {Data integration in the era of omics: current and future challenges},
journal = {{BMC} Syst. Biol.},
volume = {8},
number = {{S-2}},
pages = {I1},
year = {2014},
url = {https://doi.org/10.1186/1752-0509-8-S2-I1},
doi = {10.1186/1752-0509-8-S2-I1},
timestamp = {Sat, 09 Apr 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/Gomez-CabreroAMTMGBBCT14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/GongF14,
author = {Haijun Gong and
Lu Feng},
title = {Computational analysis of the roles of ER-Golgi network in the cell
cycle},
journal = {{BMC} Syst. Biol.},
volume = {8},
number = {{S-4}},
pages = {S3},
year = {2014},
url = {https://doi.org/10.1186/1752-0509-8-S4-S3},
doi = {10.1186/1752-0509-8-S4-S3},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/GongF14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/GongWC14,
author = {Haijun Gong and
Tong Tong Wu and
Edmund M. Clarke},
title = {Pathway-gene identification for pancreatic cancer survival via doubly
regularized Cox regression},
journal = {{BMC} Syst. Biol.},
volume = {8},
number = {{S-1}},
pages = {S3},
year = {2014},
url = {https://doi.org/10.1186/1752-0509-8-S1-S3},
doi = {10.1186/1752-0509-8-S1-S3},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/GongWC14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/GuzmanMMSCHSTDZRC14,
author = {Shirley Guzm{\'{a}}n and
Silvia Marin and
Anibal Miranda and
Vitaly A. Selivanov and
Josep J. Centelles and
Romain Harmancey and
Fatima Smih and
Annie Turkieh and
Yves Durocher and
Antonio Zorzano and
Philippe Rouet and
Marta Cascante},
title = {\({}^{\mbox{13}}\)C metabolic flux analysis shows that resistin impairs
the metabolic response to insulin in {L6E9} myotubes},
journal = {{BMC} Syst. Biol.},
volume = {8},
pages = {109},
year = {2014},
url = {https://doi.org/10.1186/s12918-014-0109-z},
doi = {10.1186/S12918-014-0109-Z},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/GuzmanMMSCHSTDZRC14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/HabibiEA14,
author = {Iman Habibi and
Effat S. Emamian and
Ali Abdi},
title = {Quantitative analysis of intracellular communication and signaling
errors in signaling networks},
journal = {{BMC} Syst. Biol.},
volume = {8},
pages = {89},
year = {2014},
url = {https://doi.org/10.1186/s12918-014-0089-z},
doi = {10.1186/S12918-014-0089-Z},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/HabibiEA14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/HamonJB14,
author = {J{\'{e}}r{\'{e}}my Hamon and
Paul Jennings and
Fr{\'{e}}d{\'{e}}ric Y. Bois},
title = {Systems biology modeling of omics data: effect of cyclosporine a on
the Nrf2 pathway in human renal cells},
journal = {{BMC} Syst. Biol.},
volume = {8},
pages = {76},
year = {2014},
url = {https://doi.org/10.1186/1752-0509-8-76},
doi = {10.1186/1752-0509-8-76},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/HamonJB14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/HaoZWZLGS14,
author = {Tong Hao and
Zheng Zeng and
Bin Wang and
Yichen Zhang and
Yichen Liu and
Xuyun Geng and
Jinsheng Sun},
title = {The protein-protein interaction network of eyestalk, Y-organ and hepatopancreas
in Chinese mitten crab Eriocheir sinensis},
journal = {{BMC} Syst. Biol.},
volume = {8},
pages = {39},
year = {2014},
url = {https://doi.org/10.1186/1752-0509-8-39},
doi = {10.1186/1752-0509-8-39},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/HaoZWZLGS14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/HariharanHTSJP14,
author = {Ramkumar Hariharan and
Jessica M. Hoffman and
Ariel S. Thomas and
Quinlyn A. Soltow and
Dean P. Jones and
Daniel E. L. Promislow},
title = {Invariance and plasticity in the Drosophila melanogaster metabolomic
network in response to temperature},
journal = {{BMC} Syst. Biol.},
volume = {8},
pages = {139},
year = {2014},
url = {https://doi.org/10.1186/s12918-014-0139-6},
doi = {10.1186/S12918-014-0139-6},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/HariharanHTSJP14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/HasdemirHWS14,
author = {Dicle Hasdemir and
Huub C. J. Hoefsloot and
Johan A. Westerhuis and
Age K. Smilde},
title = {How informative is your kinetic model?: using resampling methods for
model invalidation},
journal = {{BMC} Syst. Biol.},
volume = {8},
pages = {61},
year = {2014},
url = {https://doi.org/10.1186/1752-0509-8-61},
doi = {10.1186/1752-0509-8-61},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/HasdemirHWS14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/HeWQZ14,
author = {Jieyue He and
Chunyan Wang and
Kunpu Qiu and
Wei Zhong},
title = {An novel frequent probability pattern mining algorithm based on circuit
simulation method in uncertain biological networks},
journal = {{BMC} Syst. Biol.},
volume = {8},
number = {{S-3}},
pages = {S6},
year = {2014},
url = {https://doi.org/10.1186/1752-0509-8-S3-S6},
doi = {10.1186/1752-0509-8-S3-S6},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/HeWQZ14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/HegdePM14,
author = {Shubhada R. Hegde and
Khushbu Pal and
Shekhar C. Mande},
title = {Differential enrichment of regulatory motifs in the composite network
of protein-protein and gene regulatory interactions},
journal = {{BMC} Syst. Biol.},
volume = {8},
pages = {26},
year = {2014},
url = {https://doi.org/10.1186/1752-0509-8-26},
doi = {10.1186/1752-0509-8-26},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/HegdePM14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/HellwegerFB14,
author = {Ferdi L. Hellweger and
Neil D. Fredrick and
John A. Berges},
title = {Age-correlated stress resistance improves fitness of yeast: support
from agent-based simulations},
journal = {{BMC} Syst. Biol.},
volume = {8},
pages = {18},
year = {2014},
url = {https://doi.org/10.1186/1752-0509-8-18},
doi = {10.1186/1752-0509-8-18},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/HellwegerFB14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/Hernandez-de-DiegoBGTAC14,
author = {Rafael Hern{\'{a}}ndez{-}de{-}Diego and
Noemi Boix{-}Chova and
David Gomez{-}Cabrero and
Jesper Tegn{\'{e}}r and
Imad Abugessaisa and
Ana Conesa},
title = {STATegra {EMS:} an Experiment Management System for complex next-generation
omics experiments},
journal = {{BMC} Syst. Biol.},
volume = {8},
number = {{S-2}},
pages = {S9},
year = {2014},
url = {https://doi.org/10.1186/1752-0509-8-S2-S9},
doi = {10.1186/1752-0509-8-S2-S9},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/Hernandez-de-DiegoBGTAC14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/HeydeBHSKB14,
author = {Silvia von der Heyde and
Christian Bender and
Frauke Henjes and
Johanna Sonntag and
Ulrike Korf and
Tim Bei{\ss}barth},
title = {Boolean ErbB network reconstructions and perturbation simulations
reveal individual drug response in different breast cancer cell lines},
journal = {{BMC} Syst. Biol.},
volume = {8},
pages = {75},
year = {2014},
url = {https://doi.org/10.1186/1752-0509-8-75},
doi = {10.1186/1752-0509-8-75},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/HeydeBHSKB14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/Hijas-ListeKBB14,
author = {Gundi{\'{a}}n M. de Hijas{-}Liste and
Edda Klipp and
Eva Balsa{-}Canto and
Julio R. Banga},
title = {Global dynamic optimization approach to predict activation in metabolic
pathways},
journal = {{BMC} Syst. Biol.},
volume = {8},
pages = {1},
year = {2014},
url = {https://doi.org/10.1186/1752-0509-8-1},
doi = {10.1186/1752-0509-8-1},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/Hijas-ListeKBB14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/HillMWBM14,
author = {Christopher G. Hill and
Lilya V. Matyunina and
L. DeEtte Walker and
Benedict B. Benigno and
John F. McDonald},
title = {Transcriptional override: a regulatory network model of indirect responses
to modulations in microRNA expression},
journal = {{BMC} Syst. Biol.},
volume = {8},
pages = {36},
year = {2014},
url = {https://doi.org/10.1186/1752-0509-8-36},
doi = {10.1186/1752-0509-8-36},
timestamp = {Thu, 29 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcsb/HillMWBM14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/HsuYLHC14,
author = {Chih{-}Yuan Hsu and
Tsu{-}Chun Yu and
Ling{-}Jiun Lin and
Rei{-}Hsing Hu and
Bor{-}Sen Chen},
title = {Systematic approach to Escherichia coli cell population control using
a genetic lysis circuit},
journal = {{BMC} Syst. Biol.},
volume = {8},
number = {{S-5}},
pages = {S7},
year = {2014},
url = {https://doi.org/10.1186/1752-0509-8-S5-S7},
doi = {10.1186/1752-0509-8-S5-S7},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/HsuYLHC14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/IhekwabaMB14,
author = {Adaoha E. C. Ihekwaba and
Ivan Mura and
Gary C. Barker},
title = {Computational modelling and analysis of the molecular network regulating
sporulation initiation in Bacillus subtilis},
journal = {{BMC} Syst. Biol.},
volume = {8},
pages = {119},
year = {2014},
url = {https://doi.org/10.1186/s12918-014-0119-x},
doi = {10.1186/S12918-014-0119-X},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/IhekwabaMB14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/InghamOMBCKRJDWSH14,
author = {Aaron Ingham and
Simone A. Osborne and
Moira Menzies and
Suzie Briscoe and
Wei Chen and
Kritaya Kongsuwan and
Antonio Reverter and
Angela Jeanes and
Brian P. Dalrymple and
Gene Wijffels and
Robert A. Seymour and
Nicholas J. Hudson},
title = {{RNF14} is a regulator of mitochondrial and immune function in muscle},
journal = {{BMC} Syst. Biol.},
volume = {8},
pages = {10},
year = {2014},
url = {https://doi.org/10.1186/1752-0509-8-10},
doi = {10.1186/1752-0509-8-10},
timestamp = {Fri, 28 Jan 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcsb/InghamOMBCKRJDWSH14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/IranzoV14,
author = {Jaime Iranzo and
Pablo Villoslada},
title = {Autoimmunity and tumor immunology: two facets of a probabilistic immune
system},
journal = {{BMC} Syst. Biol.},
volume = {8},
pages = {120},
year = {2014},
url = {https://doi.org/10.1186/s12918-014-0120-4},
doi = {10.1186/S12918-014-0120-4},
timestamp = {Mon, 26 Jun 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/IranzoV14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/JohanssonSC14,
author = {Rikard Johansson and
Peter Str{\aa}lfors and
Gunnar Cedersund},
title = {Combining test statistics and models in bootstrapped model rejection:
it is a balancing act},
journal = {{BMC} Syst. Biol.},
volume = {8},
pages = {46},
year = {2014},
url = {https://doi.org/10.1186/1752-0509-8-46},
doi = {10.1186/1752-0509-8-46},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/JohanssonSC14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/JonnalagaddaS14,
author = {Sudhakar Jonnalagadda and
Rajagopalan Srinivasan},
title = {An efficient graph theory based method to identify every minimal reaction
set in a metabolic network},
journal = {{BMC} Syst. Biol.},
volume = {8},
pages = {28},
year = {2014},
url = {https://doi.org/10.1186/1752-0509-8-28},
doi = {10.1186/1752-0509-8-28},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/JonnalagaddaS14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/KasaviEAOK14,
author = {Ceyda Kasavi and
Serpil Eraslan and
Kazim Yal{\c{c}}in Arga and
Ebru Oner and
Bet{\"{u}}l Kirdar},
title = {A system based network approach to ethanol tolerance in Saccharomyces
cerevisiae},
journal = {{BMC} Syst. Biol.},
volume = {8},
pages = {90},
year = {2014},
url = {https://doi.org/10.1186/s12918-014-0090-6},
doi = {10.1186/S12918-014-0090-6},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcsb/KasaviEAOK14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/KelderVOGR14,
author = {Thomas Kelder and
Lars Verschuren and
Ben van Ommen and
Alain J. van Gool and
Marijana Radonjic},
title = {Network signatures link hepatic effects of anti-diabetic interventions
with systemic disease parameters},
journal = {{BMC} Syst. Biol.},
volume = {8},
pages = {108},
year = {2014},
url = {https://doi.org/10.1186/s12918-014-0108-0},
doi = {10.1186/S12918-014-0108-0},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/KelderVOGR14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/KinoshitaIUT14,
author = {Ryoichi Kinoshita and
Mitsuo Iwadate and
Hideaki Umeyama and
Y{-}h. Taguchi},
title = {Genes associated with genotype-specific {DNA} methylation in squamous
cell carcinoma as candidate drug targets},
journal = {{BMC} Syst. Biol.},
volume = {8},
number = {{S-1}},
pages = {S4},
year = {2014},
url = {https://doi.org/10.1186/1752-0509-8-S1-S4},
doi = {10.1186/1752-0509-8-S1-S4},
timestamp = {Tue, 16 Aug 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/KinoshitaIUT14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/KochiHARWM14,
author = {Naomi Kochi and
Tom{\'{a}}s Helikar and
Laura Allen and
Jim A. Rogers and
Zhenyuan Wang and
Mihaela Teodora Matache},
title = {Sensitivity analysis of biological Boolean networks using information
fusion based on nonadditive set functions},
journal = {{BMC} Syst. Biol.},
volume = {8},
pages = {92},
year = {2014},
url = {https://doi.org/10.1186/s12918-014-0092-4},
doi = {10.1186/S12918-014-0092-4},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/KochiHARWM14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/KogelmanK14,
author = {Lisette J. A. Kogelman and
Haja N. Kadarmideen},
title = {Weighted Interaction {SNP} Hub {(WISH)} network method for building
genetic networks for complex diseases and traits using whole genome
genotype data},
journal = {{BMC} Syst. Biol.},
volume = {8},
number = {{S-2}},
pages = {S5},
year = {2014},
url = {https://doi.org/10.1186/1752-0509-8-S2-S5},
doi = {10.1186/1752-0509-8-S2-S5},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/KogelmanK14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/LaiCHW14,
author = {Fu{-}Jou Lai and
Hong{-}Tsun Chang and
Yueh{-}Min Huang and
Wei{-}Sheng Wu},
title = {A comprehensive performance evaluation on the prediction results of
existing cooperative transcription factors identification algorithms},
journal = {{BMC} Syst. Biol.},
volume = {8},
number = {{S-4}},
pages = {S9},
year = {2014},
url = {https://doi.org/10.1186/1752-0509-8-S4-S9},
doi = {10.1186/1752-0509-8-S4-S9},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/LaiCHW14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/LaiJCHW14,
author = {Fu{-}Jou Lai and
Mei{-}Huei Jhu and
Chia{-}Chun Chiu and
Yueh{-}Min Huang and
Wei{-}Sheng Wu},
title = {Identifying cooperative transcription factors in yeast using multiple
data sources},
journal = {{BMC} Syst. Biol.},
volume = {8},
number = {{S-5}},
pages = {S2},
year = {2014},
url = {https://doi.org/10.1186/1752-0509-8-S5-S2},
doi = {10.1186/1752-0509-8-S5-S2},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/LaiJCHW14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/LakatosTPVC14,
author = {Dora Lakatos and
Emily D. Travis and
Kelsey E. Pierson and
Jay L. Vivian and
Andr{\'{a}}s Czir{\'{o}}k},
title = {Autocrine {FGF} feedback can establish distinct states of Nanog expression
in pluripotent stem cells: a computational analysis},
journal = {{BMC} Syst. Biol.},
volume = {8},
pages = {112},
year = {2014},
url = {https://doi.org/10.1186/s12918-014-0112-4},
doi = {10.1186/S12918-014-0112-4},
timestamp = {Wed, 09 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/LakatosTPVC14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/LanzaCRA14,
author = {Amanda M. Lanza and
Kathleen A. Curran and
Lindsey G. Rey and
Hal S. Alper},
title = {A condition-specific codon optimization approach for improved heterologous
gene expression in Saccharomyces cerevisiae},
journal = {{BMC} Syst. Biol.},
volume = {8},
pages = {33},
year = {2014},
url = {https://doi.org/10.1186/1752-0509-8-33},
doi = {10.1186/1752-0509-8-33},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/LanzaCRA14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/LarocqueCN14,
author = {Mathieu Larocque and
Thierry Ch{\'{e}}nard and
Rafael Najmanovich},
title = {A curated C. difficile strain 630 metabolic network: prediction of
essential targets and inhibitors},
journal = {{BMC} Syst. Biol.},
volume = {8},
pages = {117},
year = {2014},
url = {https://doi.org/10.1186/s12918-014-0117-z},
doi = {10.1186/S12918-014-0117-Z},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/LarocqueCN14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/LaviSG14,
author = {Orit Lavi and
Jeff Skinner and
Michael M. Gottesman},
title = {Network features suggest new hepatocellular carcinoma treatment strategies},
journal = {{BMC} Syst. Biol.},
volume = {8},
pages = {88},
year = {2014},
url = {https://doi.org/10.1186/s12918-014-0088-0},
doi = {10.1186/S12918-014-0088-0},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/LaviSG14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/LeeHH14,
author = {Wei{-}Po Lee and
Yu{-}Ting Hsiao and
Wei{-}Che Hwang},
title = {Designing a parallel evolutionary algorithm for inferring gene networks
on the cloud computing environment},
journal = {{BMC} Syst. Biol.},
volume = {8},
pages = {5},
year = {2014},
url = {https://doi.org/10.1186/1752-0509-8-5},
doi = {10.1186/1752-0509-8-5},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/LeeHH14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/LeeLKT14,
author = {Mikyung Lee and
Zhichao Liu and
Reagan Kelly and
Weida Tong},
title = {Of text and gene - using text mining methods to uncover hidden knowledge
in toxicogenomics},
journal = {{BMC} Syst. Biol.},
volume = {8},
pages = {93},
year = {2014},
url = {https://doi.org/10.1186/s12918-014-0093-3},
doi = {10.1186/S12918-014-0093-3},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/LeeLKT14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/LiFRHDZCLLYW14,
author = {Peng Li and
Yingxue Fu and
Jinlong Ru and
Chao Huang and
Jiangfeng Du and
Chunli Zheng and
Xuetong Chen and
Pidong Li and
Aiping Lu and
Ling Yang and
Yonghua Wang},
title = {Insights from systems pharmacology into cardiovascular drug discovery
and therapy},
journal = {{BMC} Syst. Biol.},
volume = {8},
pages = {141},
year = {2014},
url = {https://doi.org/10.1186/s12918-014-0141-z},
doi = {10.1186/S12918-014-0141-Z},
timestamp = {Wed, 27 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/LiFRHDZCLLYW14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/LinLWLCCLHC14,
author = {Che Lin and
Chin{-}Nan Lin and
Yu{-}Chao Wang and
Fang{-}Yu Liu and
Yu{-}Wen Chien and
Yung{-}Jen Chuang and
Chung{-}Yu Lan and
Wen{-}Ping Hsieh and
Bor{-}Sen Chen},
title = {Robustness analysis on interspecies interaction network for iron and
glucose competition between Candida albicans and zebrafish during
infection},
journal = {{BMC} Syst. Biol.},
volume = {8},
number = {{S-5}},
pages = {S6},
year = {2014},
url = {https://doi.org/10.1186/1752-0509-8-S5-S6},
doi = {10.1186/1752-0509-8-S5-S6},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/LinLWLCCLHC14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/LinLWLCLHC14,
author = {Che Lin and
Chin{-}Nan Lin and
Yu{-}Chao Wang and
Fang{-}Yu Liu and
Yung{-}Jen Chuang and
Chung{-}Yu Lan and
Wen{-}Ping Hsieh and
Bor{-}Sen Chen},
title = {The role of TGF-{\(\beta\)} signaling and apoptosis in innate and
adaptive immunity in zebrafish: a systems biology approach},
journal = {{BMC} Syst. Biol.},
volume = {8},
pages = {116},
year = {2014},
url = {https://doi.org/10.1186/s12918-014-0116-0},
doi = {10.1186/S12918-014-0116-0},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/LinLWLCLHC14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/LindforsJOROP14,
author = {Erno Lindfors and
Paula Jouhten and
Merja Oja and
Eija Rintala and
Matej Oresic and
Merja Penttil{\"{a}}},
title = {Integration of transcription and flux data reveals molecular paths
associated with differences in oxygen-dependent phenotypes of Saccharomyces
cerevisiae},
journal = {{BMC} Syst. Biol.},
volume = {8},
pages = {16},
year = {2014},
url = {https://doi.org/10.1186/1752-0509-8-16},
doi = {10.1186/1752-0509-8-16},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/LindforsJOROP14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/LiuDPDMCW14,
author = {Sheng Liu and
Shamitha Dissanayake and
Sanjay Patel and
Xin Dang and
Todd Mlsna and
Yixin Chen and
Dawn Wilkins},
title = {Learning accurate and interpretable models based on regularized random
forests regression},
journal = {{BMC} Syst. Biol.},
volume = {8},
number = {{S-3}},
pages = {S5},
year = {2014},
url = {https://doi.org/10.1186/1752-0509-8-S3-S5},
doi = {10.1186/1752-0509-8-S3-S5},
timestamp = {Wed, 11 Jan 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcsb/LiuDPDMCW14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/LiuFOHN14,
author = {Lifang Liu and
Amir Feizi and
Tobias {\"{O}}sterlund and
Carsten Hjort and
Jens Nielsen},
title = {Genome-scale analysis of the high-efficient protein secretion system
of Aspergillus oryzae},
journal = {{BMC} Syst. Biol.},
volume = {8},
pages = {73},
year = {2014},
url = {https://doi.org/10.1186/1752-0509-8-73},
doi = {10.1186/1752-0509-8-73},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/LiuFOHN14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/LiuG14,
author = {Yang Liu and
Rudiyanto Gunawan},
title = {Parameter estimation of dynamic biological network models using integrated
fluxes},
journal = {{BMC} Syst. Biol.},
volume = {8},
pages = {127},
year = {2014},
url = {https://doi.org/10.1186/s12918-014-0127-x},
doi = {10.1186/S12918-014-0127-X},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/LiuG14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/LiuOLZPF14,
author = {Joanne K. Liu and
Edward J. O'Brien and
Joshua A. Lerman and
Karsten Zengler and
Bernhard O. Palsson and
Adam M. Feist},
title = {Reconstruction and modeling protein translocation and compartmentalization
in Escherichia coli at the genome-scale},
journal = {{BMC} Syst. Biol.},
volume = {8},
pages = {110},
year = {2014},
url = {https://doi.org/10.1186/s12918-014-0110-6},
doi = {10.1186/S12918-014-0110-6},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/LiuOLZPF14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/LiuP14,
author = {Xueming Liu and
Linqiang Pan},
title = {Detection of driver metabolites in the human liver metabolic network
using structural controllability analysis},
journal = {{BMC} Syst. Biol.},
volume = {8},
pages = {51},
year = {2014},
url = {https://doi.org/10.1186/1752-0509-8-51},
doi = {10.1186/1752-0509-8-51},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/LiuP14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/LiuWLWZSWQZ14,
author = {Hui Liu and
Tongtong Wang and
Hongbo Liu and
Yanjun Wei and
Guofeng Zhao and
Jianzhong Su and
Qiong Wu and
Hong Qiao and
Yan Zhang},
title = {Detection of type 2 diabetes related modules and genes based on epigenetic
networks},
journal = {{BMC} Syst. Biol.},
volume = {8},
number = {{S-1}},
pages = {S5},
year = {2014},
url = {https://doi.org/10.1186/1752-0509-8-S1-S5},
doi = {10.1186/1752-0509-8-S1-S5},
timestamp = {Thu, 15 Oct 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/LiuWLWZSWQZ14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/LiuWZ14,
author = {Li{-}Zhi Liu and
Fang{-}Xiang Wu and
Wen{-}Jun Zhang},
title = {A group LASSO-based method for robustly inferring gene regulatory
networks from multiple time-course datasets},
journal = {{BMC} Syst. Biol.},
volume = {8},
number = {{S-3}},
pages = {S1},
year = {2014},
url = {https://doi.org/10.1186/1752-0509-8-S3-S1},
doi = {10.1186/1752-0509-8-S3-S1},
timestamp = {Fri, 24 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcsb/LiuWZ14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/LuoAZ14,
author = {Zijun Luo and
Robert Azencott and
Yi Zhao},
title = {Modeling miRNA-mRNA interactions: fitting chemical kinetics equations
to microarray data},
journal = {{BMC} Syst. Biol.},
volume = {8},
pages = {19},
year = {2014},
url = {https://doi.org/10.1186/1752-0509-8-19},
doi = {10.1186/1752-0509-8-19},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/LuoAZ14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/LuoGZFZLF14,
author = {Xiaochuang Luo and
Jingyi Gu and
Rongxuan Zhu and
Maoxiao Feng and
Xuejiao Zhu and
Yumin Li and
Jia Fei},
title = {Integrative analysis of differential miRNA and functional study of
miR-21 by seed-targeting inhibition in multiple myeloma cells in response
to berberine},
journal = {{BMC} Syst. Biol.},
volume = {8},
pages = {82},
year = {2014},
url = {https://doi.org/10.1186/1752-0509-8-82},
doi = {10.1186/1752-0509-8-82},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/LuoGZFZLF14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/MaedaK14,
author = {Kazuhiro Maeda and
Hiroyuki Kurata},
title = {Analytical study of robustness of a negative feedback oscillator by
multiparameter sensitivity},
journal = {{BMC} Syst. Biol.},
volume = {8},
number = {{S-5}},
pages = {S1},
year = {2014},
url = {https://doi.org/10.1186/1752-0509-8-S5-S1},
doi = {10.1186/1752-0509-8-S5-S1},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/MaedaK14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/MencheSCMRCMLTGLBRASB14,
author = {J{\"{o}}rg Menche and
Amitabh Sharma and
Michael H. Cho and
Ruth J. Mayer and
Stephen I. Rennard and
Bartolome Celli and
Bruce E. Miller and
Nick Locantore and
Ruth Tal{-}Singer and
Soumitra Ghosh and
Chris Larminie and
Glyn Bradley and
John H. Riley and
Alvar Agusti and
Edwin K. Silverman and
Albert{-}L{\'{a}}szl{\'{o}} Barab{\'{a}}si},
title = {A diVIsive Shuffling Approach (VIStA) for gene expression analysis
to identify subtypes in Chronic Obstructive Pulmonary Disease},
journal = {{BMC} Syst. Biol.},
volume = {8},
number = {{S-2}},
pages = {S8},
year = {2014},
url = {https://doi.org/10.1186/1752-0509-8-S2-S8},
doi = {10.1186/1752-0509-8-S2-S8},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/MencheSCMRCMLTGLBRASB14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/MeyerCCKLTLBKRSTBSSS14,
author = {Pablo Meyer and
Thomas Cokelaer and
Deepak Chandran and
Kyung Hyuk Kim and
Po{-}Ru Loh and
George Tucker and
Mark Lipson and
Bonnie Berger and
Clemens Kreutz and
Andreas Raue and
Bernhard Steiert and
Jens Timmer and
Erhan Bilal and
Herbert M. Sauro and
Gustavo Stolovitzky and
Julio Saez{-}Rodriguez},
title = {Network topology and parameter estimation: from experimental design
methods to gene regulatory network kinetics using a community based
approach},
journal = {{BMC} Syst. Biol.},
volume = {8},
pages = {13},
year = {2014},
url = {https://doi.org/10.1186/1752-0509-8-13},
doi = {10.1186/1752-0509-8-13},
timestamp = {Fri, 01 Jul 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/MeyerCCKLTLBKRSTBSSS14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/MeyerCS14,
author = {Pablo Meyer and
Guillermo A. Cecchi and
Gustavo Stolovitzky},
title = {Spatial localization of the first and last enzymes effectively connects
active metabolic pathways in bacteria},
journal = {{BMC} Syst. Biol.},
volume = {8},
pages = {131},
year = {2014},
url = {https://doi.org/10.1186/s12918-014-0131-1},
doi = {10.1186/S12918-014-0131-1},
timestamp = {Fri, 01 Jul 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/MeyerCS14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/MoralesTPVL14,
author = {Yeimy Morales and
Marta Tortajada and
Jes{\'{u}}s Pic{\'{o}} and
Josep Veh{\'{\i}} and
Francisco Llaneras},
title = {Validation of an {FBA} model for Pichia pastoris in chemostat cultures},
journal = {{BMC} Syst. Biol.},
volume = {8},
pages = {142},
year = {2014},
url = {https://doi.org/10.1186/s12918-014-0142-y},
doi = {10.1186/S12918-014-0142-Y},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/MoralesTPVL14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/MoriyaYK14,
author = {Takefumi Moriya and
Masayuki Yamamura and
Daisuke Kiga},
title = {Effects of downstream genes on synthetic genetic circuits},
journal = {{BMC} Syst. Biol.},
volume = {8},
number = {{S-4}},
pages = {S4},
year = {2014},
url = {https://doi.org/10.1186/1752-0509-8-S4-S4},
doi = {10.1186/1752-0509-8-S4-S4},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/MoriyaYK14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/MullenDBT14,
author = {Emma Kate Mullen and
Mark Daley and
Alanna Gabrielle Backx and
Graham James Thompson},
title = {Gene co-citation networks associated with worker sterility in honey
bees},
journal = {{BMC} Syst. Biol.},
volume = {8},
pages = {38},
year = {2014},
url = {https://doi.org/10.1186/1752-0509-8-38},
doi = {10.1186/1752-0509-8-38},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/MullenDBT14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/NarangKHL14,
author = {Pankaj Narang and
Shawez Khan and
Anmol Hemrom and
Andrew M. Lynn},
title = {MetaNET - a web-accessible interactive platform for biological metabolic
network analysis},
journal = {{BMC} Syst. Biol.},
volume = {8},
pages = {130},
year = {2014},
url = {https://doi.org/10.1186/s12918-014-0130-2},
doi = {10.1186/S12918-014-0130-2},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/NarangKHL14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/NelsonSBMSR14,
author = {Martin R. Nelson and
Kelly J. Sutton and
Bindi S. Brook and
Dann G. Mallet and
Daniel P. Simpson and
Roger G. Rank},
title = {STI-GMaS: an open-source environment for simulation of sexually-transmitted
infections},
journal = {{BMC} Syst. Biol.},
volume = {8},
pages = {66},
year = {2014},
url = {https://doi.org/10.1186/1752-0509-8-66},
doi = {10.1186/1752-0509-8-66},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/NelsonSBMSR14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/NicolaeWBZH14,
author = {Averina Nicolae and
Judith Wahrheit and
Janina Bahnemann and
An{-}Ping Zeng and
Elmar Heinzle},
title = {Non-stationary \({}^{\mbox{13}}\)C metabolic flux analysis of Chinese
hamster ovary cells in batch culture using extracellular labeling
highlights metabolic reversibility and compartmentation},
journal = {{BMC} Syst. Biol.},
volume = {8},
pages = {50},
year = {2014},
url = {https://doi.org/10.1186/1752-0509-8-50},
doi = {10.1186/1752-0509-8-50},
timestamp = {Thu, 23 Jun 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/NicolaeWBZH14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/OngVLLSRR14,
author = {Wai Ong and
Trang T. Vu and
Klaus N. Lovendahl and
Jenna M. Llull and
Margrethe H. Serres and
Margaret F. Romine and
Jennifer L. Reed},
title = {Comparisons of Shewanella strains based on genome annotations, modeling,
and experiments},
journal = {{BMC} Syst. Biol.},
volume = {8},
pages = {31},
year = {2014},
url = {https://doi.org/10.1186/1752-0509-8-31},
doi = {10.1186/1752-0509-8-31},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/OngVLLSRR14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/Otero-MurasB14,
author = {Irene Otero{-}Muras and
Julio R. Banga},
title = {Multicriteria global optimization for biocircuit design},
journal = {{BMC} Syst. Biol.},
volume = {8},
pages = {113},
year = {2014},
url = {https://doi.org/10.1186/s12918-014-0113-3},
doi = {10.1186/S12918-014-0113-3},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/Otero-MurasB14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/Otero-MurasYS14,
author = {Irene Otero{-}Muras and
Pencho Yordanov and
J{\"{o}}rg Stelling},
title = {A method for inverse bifurcation of biochemical switches: inferring
parameters from dose response curves},
journal = {{BMC} Syst. Biol.},
volume = {8},
pages = {114},
year = {2014},
url = {https://doi.org/10.1186/s12918-014-0114-2},
doi = {10.1186/S12918-014-0114-2},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/Otero-MurasYS14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/OuzounoglouKEXSVM14,
author = {Eleftherios Ouzounoglou and
Dimitrios Kalamatianos and
Evangelia Emmanouilidou and
Maria Xilouri and
Leonidas Stefanis and
Kostas Vekrellis and
Elias S. Manolakos},
title = {In silico modeling of the effects of alpha-synuclein oligomerization
on dopaminergic neuronal homeostasis},
journal = {{BMC} Syst. Biol.},
volume = {8},
pages = {54},
year = {2014},
url = {https://doi.org/10.1186/1752-0509-8-54},
doi = {10.1186/1752-0509-8-54},
timestamp = {Mon, 03 Jan 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcsb/OuzounoglouKEXSVM14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/PaciCF14,
author = {Paola Paci and
Teresa Colombo and
Lorenzo Farina},
title = {Computational analysis identifies a sponge interaction network between
long non-coding RNAs and messenger RNAs in human breast cancer},
journal = {{BMC} Syst. Biol.},
volume = {8},
pages = {83},
year = {2014},
url = {https://doi.org/10.1186/1752-0509-8-83},
doi = {10.1186/1752-0509-8-83},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/PaciCF14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/PalmisanoHWJTS14,
author = {Alida Palmisano and
Stefan Hoops and
Layne T. Watson and
Thomas C. Jones Jr and
John J. Tyson and
Clifford A. Shaffer},
title = {Multistate Model Builder {(MSMB):} a flexible editor for compact biochemical
models},
journal = {{BMC} Syst. Biol.},
volume = {8},
pages = {42},
year = {2014},
url = {https://doi.org/10.1186/1752-0509-8-42},
doi = {10.1186/1752-0509-8-42},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/PalmisanoHWJTS14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/PapanikolaouTLPS14,
author = {Nikolaos A. Papanikolaou and
Andrej Tillinger and
Xiaoping Liu and
Athanasios G. Papavassiliou and
Esther L. Sabban},
title = {A systems approach identifies co-signaling molecules of early growth
response 1 transcription factor in immobilization stress},
journal = {{BMC} Syst. Biol.},
volume = {8},
pages = {100},
year = {2014},
url = {https://doi.org/10.1186/s12918-014-0100-8},
doi = {10.1186/S12918-014-0100-8},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/PapanikolaouTLPS14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/ParvuG14,
author = {Ovidiu Parvu and
David R. Gilbert},
title = {Automatic validation of computational models using pseudo-3D spatio-temporal
model checking},
journal = {{BMC} Syst. Biol.},
volume = {8},
pages = {124},
year = {2014},
url = {https://doi.org/10.1186/s12918-014-0124-0},
doi = {10.1186/S12918-014-0124-0},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/ParvuG14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/PatilN14,
author = {Ashwini Patil and
Kenta Nakai},
title = {TimeXNet: Identifying active gene sub-networks using time-course gene
expression profiles},
journal = {{BMC} Syst. Biol.},
volume = {8},
number = {{S-4}},
pages = {S2},
year = {2014},
url = {https://doi.org/10.1186/1752-0509-8-S4-S2},
doi = {10.1186/1752-0509-8-S4-S2},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/PatilN14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/PauwelsLV18,
author = {Edouard Pauwels and
Christian Lajaunie and
Jean{-}Philippe Vert},
title = {A Bayesian active learning strategy for sequential experimental design
in systems biology},
journal = {{BMC} Syst. Biol.},
volume = {8},
number = {1},
pages = {102:1--102:11},
year = {2014},
url = {https://doi.org/10.1186/s12918-014-0102-6},
doi = {10.1186/S12918-014-0102-6},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/PauwelsLV18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/PayneW14,
author = {Joshua L. Payne and
Andreas Wagner},
title = {Latent phenotypes pervade gene regulatory circuits},
journal = {{BMC} Syst. Biol.},
volume = {8},
pages = {64},
year = {2014},
url = {https://doi.org/10.1186/1752-0509-8-64},
doi = {10.1186/1752-0509-8-64},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcsb/PayneW14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/PengLJWC14,
author = {Jiajie Peng and
Hongxiang Li and
Qinghua Jiang and
Yadong Wang and
Jin Chen},
title = {An integrative approach for measuring semantic similarities using
gene ontology},
journal = {{BMC} Syst. Biol.},
volume = {8},
number = {{S-5}},
pages = {S8},
year = {2014},
url = {https://doi.org/10.1186/1752-0509-8-S5-S8},
doi = {10.1186/1752-0509-8-S5-S8},
timestamp = {Sun, 25 Jul 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/PengLJWC14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/PengWCCLW14,
author = {Wei Peng and
Jianxin Wang and
Juan Cai and
Lu Chen and
Min Li and
Fang{-}Xiang Wu},
title = {Improving protein function prediction using domain and protein complexes
in {PPI} networks},
journal = {{BMC} Syst. Biol.},
volume = {8},
pages = {35},
year = {2014},
url = {https://doi.org/10.1186/1752-0509-8-35},
doi = {10.1186/1752-0509-8-35},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/PengWCCLW14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/PenrodM14,
author = {Nadia M. Penrod and
Jason H. Moore},
title = {Influence networks based on coexpression improve drug target discovery
for the development of novel cancer therapeutics},
journal = {{BMC} Syst. Biol.},
volume = {8},
pages = {12},
year = {2014},
url = {https://doi.org/10.1186/1752-0509-8-12},
doi = {10.1186/1752-0509-8-12},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/PenrodM14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/PetersenRH14,
author = {Brenden K. Petersen and
Glen E. P. Ropella and
C. Anthony Hunt},
title = {Toward modular biological models: defining analog modules based on
referent physiological mechanisms},
journal = {{BMC} Syst. Biol.},
volume = {8},
pages = {95},
year = {2014},
url = {https://doi.org/10.1186/s12918-014-0095-1},
doi = {10.1186/S12918-014-0095-1},
timestamp = {Mon, 26 Jun 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/PetersenRH14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/PiroWSROERK14,
author = {Rosario M. Piro and
Stefan Wiesberg and
Gunnar Schramm and
Nico Rebel and
Marcus Oswald and
Roland Eils and
Gerhard Reinelt and
Rainer K{\"{o}}nig},
title = {Network topology-based detection of differential gene regulation and
regulatory switches in cell metabolism and signaling},
journal = {{BMC} Syst. Biol.},
volume = {8},
pages = {56},
year = {2014},
url = {https://doi.org/10.1186/1752-0509-8-56},
doi = {10.1186/1752-0509-8-56},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/PiroWSROERK14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/PlaisierLABBKPRFB14,
author = {Christopher L. Plaisier and
Fang{-}Yin Lo and
Justin Ashworth and
Aaron N. Brooks and
Karlyn D. Beer and
Amardeep Kaur and
Min Pan and
David J. Reiss and
Marc T. Facciotti and
Nitin S. Baliga},
title = {Evolution of context dependent regulation by expansion of feast/famine
regulatory proteins},
journal = {{BMC} Syst. Biol.},
volume = {8},
pages = {122},
year = {2014},
url = {https://doi.org/10.1186/s12918-014-0122-2},
doi = {10.1186/S12918-014-0122-2},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/PlaisierLABBKPRFB14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/PonzoniNTGMDDC14,
author = {Ignacio Ponzoni and
Mar{\'{\i}}a Jos{\'{e}} Nueda and
Sonia Tarazona and
Stefan G{\"{o}}tz and
David Montaner and
Julieta Sol Dussaut and
Joaqu{\'{\i}}n Dopazo and
Ana Conesa},
title = {Pathway network inference from gene expression data},
journal = {{BMC} Syst. Biol.},
volume = {8},
number = {{S-2}},
pages = {S7},
year = {2014},
url = {https://doi.org/10.1186/1752-0509-8-S2-S7},
doi = {10.1186/1752-0509-8-S2-S7},
timestamp = {Thu, 02 Dec 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcsb/PonzoniNTGMDDC14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/QianBMS14,
author = {Yu Qian and
S{\o}ren Besenbacher and
Thomas Mailund and
Mikkel Heide Schierup},
title = {Identifying disease associated genes by network propagation},
journal = {{BMC} Syst. Biol.},
volume = {8},
number = {{S-1}},
pages = {S6},
year = {2014},
url = {https://doi.org/10.1186/1752-0509-8-S1-S6},
doi = {10.1186/1752-0509-8-S1-S6},
timestamp = {Tue, 16 Aug 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/QianBMS14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/QiuTCA14,
author = {Yushan Qiu and
Takeyuki Tamura and
Wai{-}Ki Ching and
Tatsuya Akutsu},
title = {On control of singleton attractors in multiple Boolean networks: integer
programming-based method},
journal = {{BMC} Syst. Biol.},
volume = {8},
number = {{S-1}},
pages = {S7},
year = {2014},
url = {https://doi.org/10.1186/1752-0509-8-S1-S7},
doi = {10.1186/1752-0509-8-S1-S7},
timestamp = {Fri, 09 Apr 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/QiuTCA14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/QuekN14,
author = {Lake{-}Ee Quek and
Lars Keld Nielsen},
title = {A depth-first search algorithm to compute elementary flux modes by
linear programming},
journal = {{BMC} Syst. Biol.},
volume = {8},
pages = {94},
year = {2014},
url = {https://doi.org/10.1186/s12918-014-0094-2},
doi = {10.1186/S12918-014-0094-2},
timestamp = {Sun, 12 Nov 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcsb/QuekN14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/RanganathanTS14,
author = {Shoba Ranganathan and
Tin Wee Tan and
Christian Sch{\"{o}}nbach},
title = {InCoB2014: Systems Biology update from the Asia-Pacific},
journal = {{BMC} Syst. Biol.},
volume = {8},
number = {{S-4}},
pages = {I1},
year = {2014},
url = {https://doi.org/10.1186/1752-0509-8-S4-I1},
doi = {10.1186/1752-0509-8-S4-I1},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/RanganathanTS14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/RaoSEBJ14,
author = {Shodhan Rao and
Arjan van der Schaft and
Karen van Eunen and
Barbara M. Bakker and
Bayu Jayawardhana},
title = {A model reduction method for biochemical reaction networks},
journal = {{BMC} Syst. Biol.},
volume = {8},
pages = {52},
year = {2014},
url = {https://doi.org/10.1186/1752-0509-8-52},
doi = {10.1186/1752-0509-8-52},
timestamp = {Tue, 29 Dec 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcsb/RaoSEBJ14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/ReshetovaSKW14,
author = {Polina Reshetova and
Age K. Smilde and
Antoine H. C. van Kampen and
Johan A. Westerhuis},
title = {Use of prior knowledge for the analysis of high-throughput transcriptomics
and metabolomics data},
journal = {{BMC} Syst. Biol.},
volume = {8},
number = {{S-2}},
pages = {S2},
year = {2014},
url = {https://doi.org/10.1186/1752-0509-8-S2-S2},
doi = {10.1186/1752-0509-8-S2-S2},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/ReshetovaSKW14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/ReverterVO14,
author = {Ferran Reverter and
Esteban Vegas and
Josep M. Oller},
title = {Kernel-PCA data integration with enhanced interpretability},
journal = {{BMC} Syst. Biol.},
volume = {8},
number = {{S-2}},
pages = {S6},
year = {2014},
url = {https://doi.org/10.1186/1752-0509-8-S2-S6},
doi = {10.1186/1752-0509-8-S2-S6},
timestamp = {Fri, 17 Nov 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcsb/ReverterVO14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/RocaPHHCPM14,
author = {Hernan Roca and
Manjusha Pande and
Jeffrey S. Huo and
James Hernandez and
James D. Cavalcoli and
Kenneth J. Pienta and
Richard C. McEachin},
title = {A bioinformatics approach reveals novel interactions of the {OVOL}
transcription factors in the regulation of epithelial - mesenchymal
cell reprogramming and cancer progression},
journal = {{BMC} Syst. Biol.},
volume = {8},
pages = {29},
year = {2014},
url = {https://doi.org/10.1186/1752-0509-8-29},
doi = {10.1186/1752-0509-8-29},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/RocaPHHCPM14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/RohE14,
author = {Min K. Roh and
Philip Eckhoff},
title = {Stochastic parameter search for events},
journal = {{BMC} Syst. Biol.},
volume = {8},
pages = {126},
year = {2014},
url = {https://doi.org/10.1186/s12918-014-0126-y},
doi = {10.1186/S12918-014-0126-Y},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/RohE14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/RomanCA14,
author = {Magdalena San Rom{\'{a}}n and
H{\'{e}}ctor Cancela and
Luis Acerenza},
title = {Source and regulation of flux variability in Escherichia coli},
journal = {{BMC} Syst. Biol.},
volume = {8},
pages = {67},
year = {2014},
url = {https://doi.org/10.1186/1752-0509-8-67},
doi = {10.1186/1752-0509-8-67},
timestamp = {Wed, 14 Jun 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/RomanCA14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/Sands14,
author = {Timothy R. Sands},
title = {Annual Acknowledgement of Reviewers},
journal = {{BMC} Syst. Biol.},
volume = {8},
pages = {11},
year = {2014},
url = {https://doi.org/10.1186/1752-0509-8-11},
doi = {10.1186/1752-0509-8-11},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/Sands14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/SasabeSKKMM14,
author = {Masataka Sasabe and
Sayumi Shintani and
Reiko Kintaka and
Kazunari Kaizu and
Koji Makanae and
Hisao Moriya},
title = {Evaluation of the lower protein limit in the budding yeast Saccharomyces
cerevisiae using TIPI-gTOW},
journal = {{BMC} Syst. Biol.},
volume = {8},
pages = {2},
year = {2014},
url = {https://doi.org/10.1186/1752-0509-8-2},
doi = {10.1186/1752-0509-8-2},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/SasabeSKKMM14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/SchirmELS14,
author = {Sibylle Schirm and
Christoph Engel and
Markus Loeffler and
Markus Scholz},
title = {Modelling chemotherapy effects on granulopoiesis},
journal = {{BMC} Syst. Biol.},
volume = {8},
pages = {138},
year = {2014},
url = {https://doi.org/10.1186/s12918-014-0138-7},
doi = {10.1186/S12918-014-0138-7},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/SchirmELS14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/SchmidtFI14,
author = {Andreas Schmidt and
Ignasi Forne and
Axel Imhof},
title = {Bioinformatic analysis of proteomics data},
journal = {{BMC} Syst. Biol.},
volume = {8},
number = {{S-2}},
pages = {S3},
year = {2014},
url = {https://doi.org/10.1186/1752-0509-8-S2-S3},
doi = {10.1186/1752-0509-8-S2-S3},
timestamp = {Tue, 15 Nov 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcsb/SchmidtFI14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/Sebastian-LeonVMCTAASVMD14,
author = {Patricia Sebasti{\'{a}}n{-}Le{\'{o}}n and
Enrique Vidal and
Pablo Minguez and
Ana Conesa and
Sonia Tarazona and
Alicia Amadoz and
Carmen Armero and
Francisco Salavert and
Antonio Vidal{-}Puig and
David Montaner and
Joaqu{\'{\i}}n Dopazo},
title = {Understanding disease mechanisms with models of signaling pathway
activities},
journal = {{BMC} Syst. Biol.},
volume = {8},
pages = {121},
year = {2014},
url = {https://doi.org/10.1186/s12918-014-0121-3},
doi = {10.1186/S12918-014-0121-3},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/Sebastian-LeonVMCTAASVMD14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/SinhaSTNTKRC14,
author = {Neeraj Sinha and
Sachin Sharma and
Parul Tripathi and
Simarjeet Negi and
Kamiya Tikoo and
Dhiraj Kumar and
Kanury Rao and
Samrat Chatterjee},
title = {Molecular signatures for obesity and associated disorders identified
through partial least square regression models},
journal = {{BMC} Syst. Biol.},
volume = {8},
pages = {104},
year = {2014},
url = {https://doi.org/10.1186/s12918-014-0104-4},
doi = {10.1186/S12918-014-0104-4},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/SinhaSTNTKRC14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/SongLA14,
author = {Ruijie Song and
Ping Liu and
Murat Acar},
title = {Network-dosage compensation topologies as recurrent network motifs
in natural gene networks},
journal = {{BMC} Syst. Biol.},
volume = {8},
pages = {69},
year = {2014},
url = {https://doi.org/10.1186/1752-0509-8-69},
doi = {10.1186/1752-0509-8-69},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/SongLA14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/SrihariMSLSKR14,
author = {Sriganesh Srihari and
Piyush B. Madhamshettiwar and
Sarah Song and
Chao Liu and
Peter T. Simpson and
Kum Khanna and
Mark A. Ragan},
title = {Complex-based analysis of dysregulated cellular processes in cancer},
journal = {{BMC} Syst. Biol.},
volume = {8},
number = {{S-4}},
pages = {S1},
year = {2014},
url = {https://doi.org/10.1186/1752-0509-8-S4-S1},
doi = {10.1186/1752-0509-8-S4-S1},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/SrihariMSLSKR14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/SrivastavaKR14,
author = {Alok Srivastava and
Suraj Kumar and
Ramakrishna Ramaswamy},
title = {Two-layer modular analysis of gene and protein networks in breast
cancer},
journal = {{BMC} Syst. Biol.},
volume = {8},
pages = {81},
year = {2014},
url = {https://doi.org/10.1186/1752-0509-8-81},
doi = {10.1186/1752-0509-8-81},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/SrivastavaKR14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/SriyudthsakSCYKOFNVSH14,
author = {Kansuporn Sriyudthsak and
Yuji Sawada and
Yukako Chiba and
Yui Yamashita and
Shigehiko Kanaya and
Hitoshi Onouchi and
Toru Fujiwara and
Satoshi Naito and
Eberhard O. Voit and
Fumihide Shiraishi and
Masami Y. Hirai},
title = {A U-system approach for predicting metabolic behaviors and responses
based on an alleged metabolic reaction network},
journal = {{BMC} Syst. Biol.},
volume = {8},
number = {{S-5}},
pages = {S4},
year = {2014},
url = {https://doi.org/10.1186/1752-0509-8-S5-S4},
doi = {10.1186/1752-0509-8-S5-S4},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcsb/SriyudthsakSCYKOFNVSH14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/SunKT14,
author = {Shuhao Sun and
Fima C. Klebaner and
Tianhai Tian},
title = {A new model of time scheme for progression of colorectal cancer},
journal = {{BMC} Syst. Biol.},
volume = {8},
number = {{S-3}},
pages = {S2},
year = {2014},
url = {https://doi.org/10.1186/1752-0509-8-S3-S2},
doi = {10.1186/1752-0509-8-S3-S2},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/SunKT14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/SzekelyBZB14,
author = {Tam{\'{a}}s Sz{\'{e}}kely and
Kevin Burrage and
Konstantinos C. Zygalakis and
Manuel Barrio},
title = {Efficient simulation of stochastic chemical kinetics with the Stochastic
Bulirsch-Stoer extrapolation method},
journal = {{BMC} Syst. Biol.},
volume = {8},
pages = {71},
year = {2014},
url = {https://doi.org/10.1186/1752-0509-8-71},
doi = {10.1186/1752-0509-8-71},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/SzekelyBZB14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/TanGHSB14,
author = {Chin Wee Tan and
Bruce S. Gardiner and
Yumiko Hirokawa and
David W. Smith and
Antony W. Burgess},
title = {Analysis of Wnt signaling {\(\beta\)}-catenin spatial dynamics in
{HEK293T} cells},
journal = {{BMC} Syst. Biol.},
volume = {8},
pages = {44},
year = {2014},
url = {https://doi.org/10.1186/1752-0509-8-44},
doi = {10.1186/1752-0509-8-44},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcsb/TanGHSB14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/TekuOV14,
author = {Gabriel N. Teku and
Csaba P. Ortutay and
Mauno Vihinen},
title = {Identification of core {T} cell network based on immunome interactome},
journal = {{BMC} Syst. Biol.},
volume = {8},
pages = {17},
year = {2014},
url = {https://doi.org/10.1186/1752-0509-8-17},
doi = {10.1186/1752-0509-8-17},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/TekuOV14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/TianK14,
author = {Dan Tian and
Pamela K. Kreeger},
title = {Analysis of the quantitative balance between insulin-like growth factor
{(IGF)-1} ligand, receptor, and binding protein levels to predict
cell sensitivity and therapeutic efficacy},
journal = {{BMC} Syst. Biol.},
volume = {8},
pages = {98},
year = {2014},
url = {https://doi.org/10.1186/s12918-014-0098-y},
doi = {10.1186/S12918-014-0098-Y},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/TianK14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/TianS14,
author = {Tianhai Tian and
Kate Smith{-}Miles},
title = {Mathematical modeling of GATA-switching for regulating the differentiation
of hematopoietic stem cell},
journal = {{BMC} Syst. Biol.},
volume = {8},
number = {{S-1}},
pages = {S8},
year = {2014},
url = {https://doi.org/10.1186/1752-0509-8-S1-S8},
doi = {10.1186/1752-0509-8-S1-S8},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/TianS14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/TianZHCZSXHW14,
author = {Ye Tian and
Bai Zhang and
Eric P. Hoffman and
Robert Clarke and
Zhen Zhang and
Ie{-}Ming Shih and
Jianhua Xuan and
David M. Herrington and
Yue Joseph Wang},
title = {Knowledge-fused differential dependency network models for detecting
significant rewiring in biological networks},
journal = {{BMC} Syst. Biol.},
volume = {8},
pages = {87},
year = {2014},
url = {https://doi.org/10.1186/s12918-014-0087-1},
doi = {10.1186/S12918-014-0087-1},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcsb/TianZHCZSXHW14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/TomescuMT14,
author = {Oana A. Tomescu and
Diethard Mattanovich and
Gerhard G. Thallinger},
title = {Integrative omics analysis. {A} study based on Plasmodium falciparum
mRNA and protein data},
journal = {{BMC} Syst. Biol.},
volume = {8},
number = {{S-2}},
pages = {S4},
year = {2014},
url = {https://doi.org/10.1186/1752-0509-8-S2-S4},
doi = {10.1186/1752-0509-8-S2-S4},
timestamp = {Fri, 17 Nov 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcsb/TomescuMT14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/TondelNLS14,
author = {Kristin T{\o}ndel and
Steven A. Niederer and
Sander Land and
Nicolas Smith},
title = {Insight into model mechanisms through automatic parameter fitting:
a new methodological framework for model development},
journal = {{BMC} Syst. Biol.},
volume = {8},
pages = {59},
year = {2014},
url = {https://doi.org/10.1186/1752-0509-8-59},
doi = {10.1186/1752-0509-8-59},
timestamp = {Mon, 21 Dec 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcsb/TondelNLS14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/TranOHPP14,
author = {Trish P. Tran and
Edison Ong and
Andrew P. Hodges and
Giovanni Paternostro and
Carlo Piermarocchi},
title = {Prediction of kinase inhibitor response using activity profiling,
in vitro screening, and elastic net regression},
journal = {{BMC} Syst. Biol.},
volume = {8},
pages = {74},
year = {2014},
url = {https://doi.org/10.1186/1752-0509-8-74},
doi = {10.1186/1752-0509-8-74},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcsb/TranOHPP14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/Trusina14,
author = {Ala Trusina},
title = {Stress induced telomere shortening: longer life with less mutations?},
journal = {{BMC} Syst. Biol.},
volume = {8},
pages = {27},
year = {2014},
url = {https://doi.org/10.1186/1752-0509-8-27},
doi = {10.1186/1752-0509-8-27},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/Trusina14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/TsengCSGSHTP14,
author = {Feng{-}Jen Tseng and
Wei{-}Tso Chia and
Jia{-}Fwu Shyu and
Guo{-}Hau Gou and
Huey{-}Kang Sytwu and
Ching{-}Wu Hsia and
Min{-}Jen Tseng and
Ru{-}Yu Pan},
title = {Interactomics profiling of the negative regulatory function of carbon
monoxide on RANKL-treated {RAW} 264.7 cells during osteoclastogenesis},
journal = {{BMC} Syst. Biol.},
volume = {8},
pages = {57},
year = {2014},
url = {https://doi.org/10.1186/1752-0509-8-57},
doi = {10.1186/1752-0509-8-57},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/TsengCSGSHTP14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/UsherenkoSMEKT14,
author = {Svetlana Usherenko and
Hilke Stibbe and
Massimiliano Musc{\`{o}} and
Lars{-}Oliver Essen and
Ekaterina A. Kostina and
Christof Taxis},
title = {Photo-sensitive degron variants for tuning protein stability by light},
journal = {{BMC} Syst. Biol.},
volume = {8},
pages = {128},
year = {2014},
url = {https://doi.org/10.1186/s12918-014-0128-9},
doi = {10.1186/S12918-014-0128-9},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/UsherenkoSMEKT14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/VaneeBSSKWDF14,
author = {Niti Vanee and
J. Paul Brooks and
Victor Spicer and
Dmitriy Shamshurin and
Oleg Krokhin and
John A. Wilkins and
Yu Deng and
Stephen S. Fong},
title = {Proteomics-based metabolic modeling and characterization of the cellulolytic
bacterium Thermobifida fusca},
journal = {{BMC} Syst. Biol.},
volume = {8},
pages = {86},
year = {2014},
url = {https://doi.org/10.1186/s12918-014-0086-2},
doi = {10.1186/S12918-014-0086-2},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/VaneeBSSKWDF14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/VanlierTHR14,
author = {Joep Vanlier and
Christian A. Tiemann and
Peter A. J. Hilbers and
Natal A. W. van Riel},
title = {Optimal experiment design for model selection in biochemical networks},
journal = {{BMC} Syst. Biol.},
volume = {8},
pages = {20},
year = {2014},
url = {https://doi.org/10.1186/1752-0509-8-20},
doi = {10.1186/1752-0509-8-20},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/VanlierTHR14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/Vera-LiconaJGML14,
author = {Paola Vera{-}Licona and
Abdul Salam Jarrah and
Luis David Garc{\'{\i}}a{-}Puente and
John McGee and
Reinhard C. Laubenbacher},
title = {An Algebra-Based Method for Inferring Gene Regulatory Networks},
journal = {{BMC} Syst. Biol.},
volume = {8},
pages = {37},
year = {2014},
url = {https://doi.org/10.1186/1752-0509-8-37},
doi = {10.1186/1752-0509-8-37},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/Vera-LiconaJGML14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/VercammenLI14,
author = {Dominique Vercammen and
Filip Logist and
Jan F. M. Van Impe},
title = {Dynamic estimation of specific fluxes in metabolic networks using
non-linear dynamic optimization},
journal = {{BMC} Syst. Biol.},
volume = {8},
pages = {132},
year = {2014},
url = {https://doi.org/10.1186/s12918-014-0132-0},
doi = {10.1186/S12918-014-0132-0},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/VercammenLI14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/VerdCJ14,
author = {Berta Verd and
Anton Crombach and
Johannes Jaeger},
title = {Classification of transient behaviours in a time-dependent toggle
switch model},
journal = {{BMC} Syst. Biol.},
volume = {8},
pages = {43},
year = {2014},
url = {https://doi.org/10.1186/1752-0509-8-43},
doi = {10.1186/1752-0509-8-43},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/VerdCJ14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/VermeerschWMS14,
author = {Kathleen A. Vermeersch and
Lijuan Wang and
John F. McDonald and
Mark P. Styczynski},
title = {Distinct metabolic responses of an ovarian cancer stem cell line},
journal = {{BMC} Syst. Biol.},
volume = {8},
pages = {134},
year = {2014},
url = {https://doi.org/10.1186/s12918-014-0134-y},
doi = {10.1186/S12918-014-0134-Y},
timestamp = {Thu, 29 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcsb/VermeerschWMS14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/WalshSD14,
author = {Jesse R. Walsh and
Taner Z. Sen and
Julie A. Dickerson},
title = {A computational platform to maintain and migrate manual functional
annotations for BioCyc databases},
journal = {{BMC} Syst. Biol.},
volume = {8},
pages = {115},
year = {2014},
url = {https://doi.org/10.1186/s12918-014-0115-1},
doi = {10.1186/S12918-014-0115-1},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/WalshSD14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/WaltherHM14,
author = {Georg R. Walther and
Matthew Hartley and
Maya Mincheva},
title = {GraTeLPy: graph-theoretic linear stability analysis},
journal = {{BMC} Syst. Biol.},
volume = {8},
pages = {22},
year = {2014},
url = {https://doi.org/10.1186/1752-0509-8-22},
doi = {10.1186/1752-0509-8-22},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/WaltherHM14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/WangCNCST14,
author = {Charles C. N. Wang and
Pei{-}Chun Chang and
Ka{-}Lok Ng and
Chun{-}Ming Chang and
Phillip C.{-}Y. Sheu and
Jeffrey J. P. Tsai},
title = {A model comparison study of the flowering time regulatory network
in Arabidopsis},
journal = {{BMC} Syst. Biol.},
volume = {8},
pages = {15},
year = {2014},
url = {https://doi.org/10.1186/1752-0509-8-15},
doi = {10.1186/1752-0509-8-15},
timestamp = {Mon, 15 Jun 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/WangCNCST14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/WangKG14,
author = {Xiaolei Wang and
Hiroyuki Kuwahara and
Xin Gao},
title = {Modeling {DNA} affinity landscape through two-round support vector
regression with weighted degree kernels},
journal = {{BMC} Syst. Biol.},
volume = {8},
number = {{S-5}},
pages = {S5},
year = {2014},
url = {https://doi.org/10.1186/1752-0509-8-S5-S5},
doi = {10.1186/1752-0509-8-S5-S5},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/WangKG14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/WangQ14,
author = {Yijie Wang and
Xiaoning Qian},
title = {Joint clustering of protein interaction networks through Markov random
walk},
journal = {{BMC} Syst. Biol.},
volume = {8},
number = {{S-1}},
pages = {S9},
year = {2014},
url = {https://doi.org/10.1186/1752-0509-8-S1-S9},
doi = {10.1186/1752-0509-8-S1-S9},
timestamp = {Mon, 01 Mar 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcsb/WangQ14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/WangSSWSS14,
author = {Kaier Wang and
Moira L. Steyn{-}Ross and
D. A. Steyn{-}Ross and
Marcus T. Wilson and
Jamie W. Sleigh and
Yoichi Shiraishi},
title = {Simulations of pattern dynamics for reaction-diffusion systems via
{SIMULINK}},
journal = {{BMC} Syst. Biol.},
volume = {8},
pages = {45},
year = {2014},
url = {https://doi.org/10.1186/1752-0509-8-45},
doi = {10.1186/1752-0509-8-45},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/WangSSWSS14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/WeaverKMPK14,
author = {Daniel S. Weaver and
Ingrid M. Keseler and
Amanda Mackie and
Ian T. Paulsen and
Peter D. Karp},
title = {A genome-scale metabolic flux model of Escherichia coli {K-12} derived
from the EcoCyc database},
journal = {{BMC} Syst. Biol.},
volume = {8},
pages = {79},
year = {2014},
url = {https://doi.org/10.1186/1752-0509-8-79},
doi = {10.1186/1752-0509-8-79},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/WeaverKMPK14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/WimalaratneGHNL14,
author = {Sarala M. Wimalaratne and
Pierre Grenon and
Henning Hermjakob and
Nicolas Le Nov{\`{e}}re and
Camille Laibe},
title = {BioModels linked dataset},
journal = {{BMC} Syst. Biol.},
volume = {8},
pages = {91},
year = {2014},
url = {https://doi.org/10.1186/s12918-014-0091-5},
doi = {10.1186/S12918-014-0091-5},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/WimalaratneGHNL14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/WollboldJMRW14,
author = {Johannes Wollbold and
Robert Jaster and
Sarah M{\"{u}}ller and
Katja Rateitschak and
Olaf Wolkenhauer},
title = {Anti-inflammatory effects of reactive oxygen species - a multi-valued
logical model validated by formal concept analysis},
journal = {{BMC} Syst. Biol.},
volume = {8},
pages = {101},
year = {2014},
url = {https://doi.org/10.1186/s12918-014-0101-7},
doi = {10.1186/S12918-014-0101-7},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/WollboldJMRW14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/WuKLZ14,
author = {Min Wu and
Chee Keong Kwoh and
Xiaoli Li and
Jie Zheng},
title = {Finding trans-regulatory genes and protein complexes modulating meiotic
recombination hotspots of human, mouse and yeast},
journal = {{BMC} Syst. Biol.},
volume = {8},
pages = {107},
year = {2014},
url = {https://doi.org/10.1186/s12918-014-0107-1},
doi = {10.1186/S12918-014-0107-1},
timestamp = {Fri, 09 Apr 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/WuKLZ14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/WuWYC14,
author = {Wei{-}Sheng Wu and
Ming{-}Liang Wei and
Chia{-}Ming Yeh and
Darby Tien{-}Hao Chang},
title = {A regulatory similarity measure using the location information of
transcription factor binding sites in Saccharomyces cerevisiae},
journal = {{BMC} Syst. Biol.},
volume = {8},
number = {{S-5}},
pages = {S9},
year = {2014},
url = {https://doi.org/10.1186/1752-0509-8-S5-S9},
doi = {10.1186/1752-0509-8-S5-S9},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/WuWYC14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/XiZWW14,
author = {Yanping Xi and
Yue Zhao and
Li Wang and
Fei Wang},
title = {Comparison on extreme pathways reveals nature of different biological
processes},
journal = {{BMC} Syst. Biol.},
volume = {8},
number = {{S-1}},
pages = {S10},
year = {2014},
url = {https://doi.org/10.1186/1752-0509-8-S1-S10},
doi = {10.1186/1752-0509-8-S1-S10},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/XiZWW14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/YanW14,
author = {Changhui Yan and
Yingfeng Wang},
title = {A graph kernel method for DNA-binding site prediction},
journal = {{BMC} Syst. Biol.},
volume = {8},
number = {{S-4}},
pages = {S10},
year = {2014},
url = {https://doi.org/10.1186/1752-0509-8-S4-S10},
doi = {10.1186/1752-0509-8-S4-S10},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/YanW14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/YangGXW14,
author = {Jialiang Yang and
Stefan Gr{\"{u}}newald and
Yifei Xu and
Xiu{-}Feng Wan},
title = {Quartet-based methods to reconstruct phylogenetic networks},
journal = {{BMC} Syst. Biol.},
volume = {8},
pages = {21},
year = {2014},
url = {https://doi.org/10.1186/1752-0509-8-21},
doi = {10.1186/1752-0509-8-21},
timestamp = {Mon, 26 Jun 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/YangGXW14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/YangSOCLN14,
author = {Peng Yang and
Xiaoquan Su and
Le Ou{-}Yang and
Hon Nian Chua and
Xiaoli Li and
Kang Ning},
title = {Microbial community pattern detection in human body habitats via ensemble
clustering framework},
journal = {{BMC} Syst. Biol.},
volume = {8},
number = {{S-4}},
pages = {S7},
year = {2014},
url = {https://doi.org/10.1186/1752-0509-8-S4-S7},
doi = {10.1186/1752-0509-8-S4-S7},
timestamp = {Tue, 29 Dec 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcsb/YangSOCLN14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/YangWHW14,
author = {Tzu{-}Hsien Yang and
Chung{-}Ching Wang and
Po{-}Cheng Hung and
Wei{-}Sheng Wu},
title = {cisMEP: an integrated repository of genomic epigenetic profiles and
cis-regulatory modules in Drosophila},
journal = {{BMC} Syst. Biol.},
volume = {8},
number = {{S-4}},
pages = {S8},
year = {2014},
url = {https://doi.org/10.1186/1752-0509-8-S4-S8},
doi = {10.1186/1752-0509-8-S4-S8},
timestamp = {Sat, 09 Apr 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/YangWHW14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/YongMW14,
author = {Chern Han Yong and
Osamu Maruyama and
Limsoon Wong},
title = {Discovery of small protein complexes from {PPI} networks with size-specific
supervised weighting},
journal = {{BMC} Syst. Biol.},
volume = {8},
number = {{S-5}},
pages = {S3},
year = {2014},
url = {https://doi.org/10.1186/1752-0509-8-S5-S3},
doi = {10.1186/1752-0509-8-S5-S3},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/YongMW14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/YoungRY14,
author = {William Chad Young and
Adrian E. Raftery and
Ka Yee Yeung},
title = {Fast Bayesian inference for gene regulatory networks using ScanBMA},
journal = {{BMC} Syst. Biol.},
volume = {8},
pages = {47},
year = {2014},
url = {https://doi.org/10.1186/1752-0509-8-47},
doi = {10.1186/1752-0509-8-47},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/YoungRY14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/YuY0LWY14,
author = {Feng Yu and
Zhi{-}Hao Yang and
Nan Tang and
Hong Lin and
Jian Wang and
Zhiwei Yang},
title = {Predicting protein complex in protein interaction network - a supervised
learning based method},
journal = {{BMC} Syst. Biol.},
volume = {8},
number = {{S-3}},
pages = {S4},
year = {2014},
url = {https://doi.org/10.1186/1752-0509-8-S3-S4},
doi = {10.1186/1752-0509-8-S3-S4},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/YuY0LWY14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/ZhangBW14,
author = {Qingyang Zhang and
Joanna E. Burdette and
Ji{-}Ping Wang},
title = {Integrative network analysis of {TCGA} data for ovarian cancer},
journal = {{BMC} Syst. Biol.},
volume = {8},
pages = {1338},
year = {2014},
url = {https://doi.org/10.1186/s12918-014-0136-9},
doi = {10.1186/S12918-014-0136-9},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/ZhangBW14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/ZhangSYW14,
title = {Retraction Note: Predicting new molecular targets for rhein using
network pharmacology},
journal = {{BMC} Syst. Biol.},
volume = {8},
pages = {105},
year = {2014},
url = {https://doi.org/10.1186/s12918-014-0105-3},
doi = {10.1186/S12918-014-0105-3},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/ZhangSYW14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/ZhaoK14,
author = {Yun{-}Bo Zhao and
J. Krishnan},
title = {mRNA translation and protein synthesis: an analysis of different modelling
methodologies and a new {PBN} based approach},
journal = {{BMC} Syst. Biol.},
volume = {8},
pages = {25},
year = {2014},
url = {https://doi.org/10.1186/1752-0509-8-25},
doi = {10.1186/1752-0509-8-25},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/ZhaoK14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/ZhengCCBXCN14,
author = {Zhenzhen Zheng and
Scott Christley and
William T. Chiu and
Ira L. Blitz and
Xiaohui Xie and
Ken W. Y. Cho and
Qing Nie},
title = {Inference of the Xenopus tropicalis embryonic regulatory network and
spatial gene expression patterns},
journal = {{BMC} Syst. Biol.},
volume = {8},
pages = {3},
year = {2014},
url = {https://doi.org/10.1186/1752-0509-8-3},
doi = {10.1186/1752-0509-8-3},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/ZhengCCBXCN14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/ZhuC14,
author = {Wei Zhu and
Yi{-}Ping Phoebe Chen},
title = {Computational developments in microRNA-regulated protein-protein interactions},
journal = {{BMC} Syst. Biol.},
volume = {8},
pages = {14},
year = {2014},
url = {https://doi.org/10.1186/1752-0509-8-14},
doi = {10.1186/1752-0509-8-14},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/ZhuC14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/ZhuLH14,
author = {Peican Zhu and
Jinghang Liang and
Jie Han},
title = {Gene perturbation and intervention in context-sensitive stochastic
Boolean networks},
journal = {{BMC} Syst. Biol.},
volume = {8},
pages = {60},
year = {2014},
url = {https://doi.org/10.1186/1752-0509-8-60},
doi = {10.1186/1752-0509-8-60},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/ZhuLH14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/AitkenA13,
author = {Stuart Aitken and
Ozgur E. Akman},
title = {Nested sampling for parameter inference in systems biology: application
to an exemplar circadian model},
journal = {{BMC} Syst. Biol.},
volume = {7},
pages = {72},
year = {2013},
url = {https://doi.org/10.1186/1752-0509-7-72},
doi = {10.1186/1752-0509-7-72},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/AitkenA13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/AmaraCCPCFBP13,
author = {Flavio Amara and
Riccardo Colombo and
Paolo Cazzaniga and
Dario Pescini and
Attila Csik{\'{a}}sz{-}Nagy and
Marco Falconi and
Daniela Besozzi and
Paolo Plevani},
title = {In vivo and in silico analysis of {PCNA} ubiquitylation in the activation
of the Post Replication Repair pathway in S. cerevisiae},
journal = {{BMC} Syst. Biol.},
volume = {7},
pages = {24},
year = {2013},
url = {https://doi.org/10.1186/1752-0509-7-24},
doi = {10.1186/1752-0509-7-24},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/AmaraCCPCFBP13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/AzmiBBPLYDRSM13,
author = {Asfar S. Azmi and
Aliccia Bollig{-}Fischer and
Bin Bao and
Bum{-}Joon Park and
Sun{-}Hye Lee and
Gyu Yong{-}Song and
Gregory Dyson and
Chandan K. Reddy and
Fazlul H. Sarkar and
Ramzi M. Mohammad},
title = {Systems analysis reveals a transcriptional reversal of the mesenchymal
phenotype induced by SNAIL-inhibitor {GN-25}},
journal = {{BMC} Syst. Biol.},
volume = {7},
pages = {85},
year = {2013},
url = {https://doi.org/10.1186/1752-0509-7-85},
doi = {10.1186/1752-0509-7-85},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/AzmiBBPLYDRSM13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/BackZB13,
author = {Walter de Back and
Roland Zimm and
Lutz Brusch},
title = {Transdifferentiation of pancreatic cells by loss of contact-mediated
signaling},
journal = {{BMC} Syst. Biol.},
volume = {7},
pages = {77},
year = {2013},
url = {https://doi.org/10.1186/1752-0509-7-77},
doi = {10.1186/1752-0509-7-77},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/BackZB13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/BaeRCHKK13,
author = {Taejeong Bae and
Kyoohyoung Rho and
Jin Woo Choi and
Katsuhisa Horimoto and
Wan Kyu Kim and
Sunghoon Kim},
title = {Identification of upstream regulators for prognostic expression signature
genes in colorectal cancer},
journal = {{BMC} Syst. Biol.},
volume = {7},
pages = {86},
year = {2013},
url = {https://doi.org/10.1186/1752-0509-7-86},
doi = {10.1186/1752-0509-7-86},
timestamp = {Fri, 06 Aug 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/BaeRCHKK13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/BarbaDLL13,
author = {Matthieu Barba and
Rapha{\"{e}}l Dutoit and
Christianne Legrain and
Bernard Labedan},
title = {Identifying reaction modules in metabolic pathways: bioinformatic
deduction and experimental validation of a new putative route in purine
catabolism},
journal = {{BMC} Syst. Biol.},
volume = {7},
pages = {99},
year = {2013},
url = {https://doi.org/10.1186/1752-0509-7-99},
doi = {10.1186/1752-0509-7-99},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcsb/BarbaDLL13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/BatagovYJTNK13,
author = {Arsen O. Batagov and
Aliaksandr A. Yarmishyn and
Piroon Jenjaroenpun and
Jovina Z. Tan and
Yuichiro Nishida and
Igor Kurochkin},
title = {Role of genomic architecture in the expression dynamics of long noncoding
RNAs during differentiation of human neuroblastoma cells},
journal = {{BMC} Syst. Biol.},
volume = {7},
number = {{S-3}},
pages = {S11},
year = {2013},
url = {https://doi.org/10.1186/1752-0509-7-S3-S11},
doi = {10.1186/1752-0509-7-S3-S11},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/BatagovYJTNK13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/BaumlerMRP13,
author = {David J. Baumler and
Bing Ma and
Jennifer L. Reed and
Nicole T. Perna},
title = {Inferring ancient metabolism using ancestral core metabolic models
of enterobacteria},
journal = {{BMC} Syst. Biol.},
volume = {7},
pages = {46},
year = {2013},
url = {https://doi.org/10.1186/1752-0509-7-46},
doi = {10.1186/1752-0509-7-46},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/BaumlerMRP13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/BeiH13,
author = {Yuanzhe Bei and
Pengyu Hong},
title = {A novel approach to minimize false discovery rate in genome-wide data
analysis},
journal = {{BMC} Syst. Biol.},
volume = {7},
number = {{S-4}},
pages = {S1},
year = {2013},
url = {https://doi.org/10.1186/1752-0509-7-S4-S1},
doi = {10.1186/1752-0509-7-S4-S1},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/BeiH13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/BershteynE13,
author = {Anna Bershteyn and
Philip A. Eckhoff},
title = {A model of {HIV} drug resistance driven by heterogeneities in host
immunity and adherence patterns},
journal = {{BMC} Syst. Biol.},
volume = {7},
pages = {11},
year = {2013},
url = {https://doi.org/10.1186/1752-0509-7-11},
doi = {10.1186/1752-0509-7-11},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/BershteynE13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/BesshoSSSMWKDJB13,
author = {Kazuhiko Bessho and
Kumar Shanmukhappa and
Rachel Sheridan and
Pranavkumar Shivakumar and
Reena Mourya and
Stephanie Walters and
Vivek Kaimal and
Eric Dilbone and
Anil G. Jegga and
Jorge A. Bezerra},
title = {Integrative genomics identifies candidate microRNAs for pathogenesis
of experimental biliary atresia},
journal = {{BMC} Syst. Biol.},
volume = {7},
pages = {104},
year = {2013},
url = {https://doi.org/10.1186/1752-0509-7-104},
doi = {10.1186/1752-0509-7-104},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/BesshoSSSMWKDJB13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/BockmayrKGDB13,
author = {Michael Bockmayr and
Frederick Klauschen and
Balazs Gy{\"{o}}rffy and
Carsten Denkert and
Jan Budczies},
title = {New network topology approaches reveal differential correlation patterns
in breast cancer},
journal = {{BMC} Syst. Biol.},
volume = {7},
pages = {78},
year = {2013},
url = {https://doi.org/10.1186/1752-0509-7-78},
doi = {10.1186/1752-0509-7-78},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/BockmayrKGDB13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/BogdalHKL13,
author = {Marta N. Bogdal and
Beata Hat and
Marek Kochanczyk and
Tomasz Lipniacki},
title = {Levels of pro-apoptotic regulator Bad and anti-apoptotic regulator
Bcl-xL determine the type of the apoptotic logic gate},
journal = {{BMC} Syst. Biol.},
volume = {7},
pages = {67},
year = {2013},
url = {https://doi.org/10.1186/1752-0509-7-67},
doi = {10.1186/1752-0509-7-67},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/BogdalHKL13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/BonnetCRSBZ13,
author = {Eric Bonnet and
Laurence Calzone and
Daniel Rovera and
Gautier Stoll and
Emmanuel Barillot and
Andrei Yu. Zinovyev},
title = {BiNoM 2.0, a Cytoscape plugin for accessing and analyzing pathways
using standard systems biology formats},
journal = {{BMC} Syst. Biol.},
volume = {7},
pages = {18},
year = {2013},
url = {https://doi.org/10.1186/1752-0509-7-18},
doi = {10.1186/1752-0509-7-18},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/BonnetCRSBZ13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/BorgosBSEJBENV13,
author = {Sven E. F. Borgos and
Sergio Bordel and
H{\aa}vard Sletta and
Helga Ertesv{\aa}g and
{\O}yvind M. Jakobsen and
Per Bruheim and
Trond E. Ellingsen and
Jens Nielsen and
Svein Valla},
title = {Mapping global effects of the anti-sigma factor MucA in Pseudomonas
fluorescens {SBW25} through genome-scale metabolic modeling},
journal = {{BMC} Syst. Biol.},
volume = {7},
pages = {19},
year = {2013},
url = {https://doi.org/10.1186/1752-0509-7-19},
doi = {10.1186/1752-0509-7-19},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/BorgosBSEJBENV13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/BrenHDKA13,
author = {Anat Bren and
Yuval Hart and
Erez Dekel and
Daniel Koster and
Uri Alon},
title = {The last generation of bacterial growth in limiting nutrient},
journal = {{BMC} Syst. Biol.},
volume = {7},
pages = {27},
year = {2013},
url = {https://doi.org/10.1186/1752-0509-7-27},
doi = {10.1186/1752-0509-7-27},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/BrenHDKA13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/BryantSP13,
author = {William A. Bryant and
Michael J. E. Sternberg and
John W. Pinney},
title = {{AMBIENT:} Active Modules for Bipartite Networks - using high-throughput
transcriptomic data to dissect metabolic response},
journal = {{BMC} Syst. Biol.},
volume = {7},
pages = {26},
year = {2013},
url = {https://doi.org/10.1186/1752-0509-7-26},
doi = {10.1186/1752-0509-7-26},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/BryantSP13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/BuCJ13,
author = {Jingde Bu and
Xuebin Chi and
Zhong Jin},
title = {{HSA:} {A} Heuristic Splice Alignment Tool},
journal = {{BMC} Syst. Biol.},
volume = {7},
number = {{S-2}},
pages = {S10},
year = {2013},
url = {https://doi.org/10.1186/1752-0509-7-S2-S10},
doi = {10.1186/1752-0509-7-S2-S10},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/BuCJ13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/BuchelRSWCKMSGGIKRWHHK0MZCSSLDN13,
author = {Finja B{\"{u}}chel and
Nicolas Rodriguez and
Neil Swainston and
Clemens Wrzodek and
Tobias Czauderna and
Roland Keller and
Florian Mittag and
Michael Schubert and
Mihai Glont and
Martin Golebiewski and
Martijn P. van Iersel and
Sarah M. Keating and
Matthias Rall and
Michael Wybrow and
Henning Hermjakob and
Michael Hucka and
Douglas B. Kell and
Wolfgang M{\"{u}}ller and
Pedro Mendes and
Andreas Zell and
Claudine Chaouiya and
Julio Saez{-}Rodriguez and
Falk Schreiber and
Camille Laibe and
Andreas Dr{\"{a}}ger and
Nicolas Le Nov{\`{e}}re},
title = {Path2Models: large-scale generation of computational models from biochemical
pathway maps},
journal = {{BMC} Syst. Biol.},
volume = {7},
pages = {116},
year = {2013},
url = {https://doi.org/10.1186/1752-0509-7-116},
doi = {10.1186/1752-0509-7-116},
timestamp = {Thu, 03 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/BuchelRSWCKMSGGIKRWHHK0MZCSSLDN13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/BuddSWJZ13,
author = {William T. Budd and
Sarah Seashols and
Danielle Weaver and
Cyriac Joseph and
Zendra E. Zehner},
title = {A networks method for ranking microRNA dysregulation in cancer},
journal = {{BMC} Syst. Biol.},
volume = {7},
number = {{S-5}},
pages = {S3},
year = {2013},
url = {https://doi.org/10.1186/1752-0509-7-S5-S3},
doi = {10.1186/1752-0509-7-S5-S3},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/BuddSWJZ13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/CarreraJ13,
author = {Javier Carrera and
Alfonso Jaramillo},
title = {Automated design of bacterial genome sequences},
journal = {{BMC} Syst. Biol.},
volume = {7},
pages = {108},
year = {2013},
url = {https://doi.org/10.1186/1752-0509-7-108},
doi = {10.1186/1752-0509-7-108},
timestamp = {Mon, 03 Jan 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcsb/CarreraJ13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/ChangXBP13,
author = {Roger L. Chang and
Lei Xie and
Philip E. Bourne and
Bernhard O. Palsson},
title = {Antibacterial mechanisms identified through structural systems pharmacology},
journal = {{BMC} Syst. Biol.},
volume = {7},
pages = {102},
year = {2013},
url = {https://doi.org/10.1186/1752-0509-7-102},
doi = {10.1186/1752-0509-7-102},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/ChangXBP13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/ChaouiyaBKNIRDBCKWGDPMKXJHKTNSH13,
author = {Claudine Chaouiya and
Duncan B{\'{e}}renguier and
Sarah M. Keating and
Aur{\'{e}}lien Naldi and
Martijn P. van Iersel and
Nicolas Rodriguez and
Andreas Dr{\"{a}}ger and
Finja B{\"{u}}chel and
Thomas Cokelaer and
Bryan M. Kowal and
Benjamin Wicks and
Emanuel J. V. Gon{\c{c}}alves and
Julien Dorier and
Michel Page and
Pedro T. Monteiro and
Axel von Kamp and
Ioannis Xenarios and
Hidde de Jong and
Michael Hucka and
Steffen Klamt and
Denis Thieffry and
Nicolas Le Nov{\`{e}}re and
Julio Saez{-}Rodriguez and
Tom{\'{a}}s Helikar},
title = {{SBML} qualitative models: a model representation format and infrastructure
to foster interactions between qualitative modelling formalisms and
tools},
journal = {{BMC} Syst. Biol.},
volume = {7},
pages = {135},
year = {2013},
url = {https://doi.org/10.1186/1752-0509-7-135},
doi = {10.1186/1752-0509-7-135},
timestamp = {Thu, 03 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/ChaouiyaBKNIRDBCKWGDPMKXJHKTNSH13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/ChenYHL13,
author = {Yi{-}Min Chen and
Chun{-}Hui Yu and
Chi{-}Chuan Hwang and
Tsunglin Liu},
title = {{OMACC:} an Optical-Map-Assisted Contig Connector for improving de
novo genome assembly},
journal = {{BMC} Syst. Biol.},
volume = {7},
number = {{S-6}},
pages = {S7},
year = {2013},
url = {https://doi.org/10.1186/1752-0509-7-S6-S7},
doi = {10.1186/1752-0509-7-S6-S7},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/ChenYHL13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/ChengC13,
author = {Wan{-}Shu Cheng and
Jung{-}Hsien Chiang},
title = {CGPredictor: a systematic integrated analytic tool for mining and
examining genome-scale cancer independent prognostic epigenetic marker
panels},
journal = {{BMC} Syst. Biol.},
volume = {7},
number = {{S-6}},
pages = {S10},
year = {2013},
url = {https://doi.org/10.1186/1752-0509-7-S6-S10},
doi = {10.1186/1752-0509-7-S6-S10},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/ChengC13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/ChengFSG13,
author = {Chao Cheng and
Yao Fu and
Linsheng Shen and
Mark Gerstein},
title = {Identification of yeast cell cycle regulated genes based on genomic
features},
journal = {{BMC} Syst. Biol.},
volume = {7},
pages = {70},
year = {2013},
url = {https://doi.org/10.1186/1752-0509-7-70},
doi = {10.1186/1752-0509-7-70},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/ChengFSG13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/ChengGSZML13,
author = {Jie Cheng and
Joel Greshock and
Leming Shi and
Shu Zheng and
Alan Menius and
Kwan Lee},
title = {Good practice guidelines for biomarker discovery from array data:
a case study for breast cancer prognosis},
journal = {{BMC} Syst. Biol.},
volume = {7},
number = {{S-4}},
pages = {S2},
year = {2013},
url = {https://doi.org/10.1186/1752-0509-7-S4-S2},
doi = {10.1186/1752-0509-7-S4-S2},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/ChengGSZML13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/ChiuCWW13,
author = {Chia{-}Chun Chiu and
Shih{-}Yao Chan and
Chung{-}Ching Wang and
Wei{-}Sheng Wu},
title = {Missing value imputation for microarray data: a comprehensive comparison
study and a web tool},
journal = {{BMC} Syst. Biol.},
volume = {7},
number = {{S-6}},
pages = {S12},
year = {2013},
url = {https://doi.org/10.1186/1752-0509-7-S6-S12},
doi = {10.1186/1752-0509-7-S6-S12},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/ChiuCWW13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/ChoWZTNC13,
author = {Hyunju Cho and
Ming Wu and
Linxia Zhang and
Ryan Thompson and
Aritro Nath and
Christina Chan},
title = {Signaling dynamics of palmitate-induced {ER} stress responses mediated
by {ATF4} in HepG2 cells},
journal = {{BMC} Syst. Biol.},
volume = {7},
pages = {9},
year = {2013},
url = {https://doi.org/10.1186/1752-0509-7-9},
doi = {10.1186/1752-0509-7-9},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/ChoWZTNC13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/ChoiP13,
author = {Jiin Choi and
Taesung Park},
title = {Multivariate generalized multifactor dimensionality reduction to detect
gene-gene interactions},
journal = {{BMC} Syst. Biol.},
volume = {7},
number = {{S-6}},
pages = {S15},
year = {2013},
url = {https://doi.org/10.1186/1752-0509-7-S6-S15},
doi = {10.1186/1752-0509-7-S6-S15},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/ChoiP13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/ChumnanpuenNN13,
author = {Pramote Chumnanpuen and
Intawat Nookaew and
Jens Nielsen},
title = {Integrated analysis, transcriptome-lipidome, reveals the effects of
INO-level {(INO2} and {INO4)} on lipid metabolism in yeast},
journal = {{BMC} Syst. Biol.},
volume = {7},
number = {{S-3}},
pages = {S7},
year = {2013},
url = {https://doi.org/10.1186/1752-0509-7-S3-S7},
doi = {10.1186/1752-0509-7-S3-S7},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/ChumnanpuenNN13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/CoskunCLDOO13,
author = {Sarp A. Coskun and
A. Erc{\"{u}}ment {\c{C}}i{\c{c}}ek and
Nicola Lai and
Ranjan K. Dash and
Z. Meral {\"{O}}zsoyoglu and
Gultekin {\"{O}}zsoyoglu},
title = {An online model composition tool for system biology models},
journal = {{BMC} Syst. Biol.},
volume = {7},
pages = {88},
year = {2013},
url = {https://doi.org/10.1186/1752-0509-7-88},
doi = {10.1186/1752-0509-7-88},
timestamp = {Thu, 23 Jun 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/CoskunCLDOO13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/CrespoPJS13,
author = {Isaac Crespo and
Thanneer M. Perumal and
Wiktor Jurkowski and
Antonio del Sol},
title = {Detecting cellular reprogramming determinants by differential stability
analysis of gene regulatory networks},
journal = {{BMC} Syst. Biol.},
volume = {7},
pages = {140},
year = {2013},
url = {https://doi.org/10.1186/1752-0509-7-140},
doi = {10.1186/1752-0509-7-140},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/CrespoPJS13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/DeminSSCPFBD13,
author = {Oleg O. Demin and
Sergey V. Smirnov and
Victor V. Sokolov and
Lourdes Cucurull{-}Sanchez and
C{\'{e}}sar Pichardo{-}Almarza and
M. Victoria Flores and
Neil Benson and
Oleg V. Demin},
title = {Modeling of celiac disease immune response and the therapeutic effect
of potential drugs},
journal = {{BMC} Syst. Biol.},
volume = {7},
pages = {56},
year = {2013},
url = {https://doi.org/10.1186/1752-0509-7-56},
doi = {10.1186/1752-0509-7-56},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/DeminSSCPFBD13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/DengGW13,
author = {Yue Deng and
Lin Gao and
Bingbo Wang},
title = {ppiPre: predicting protein-protein interactions by combining heterogeneous
features},
journal = {{BMC} Syst. Biol.},
volume = {7},
number = {{S-2}},
pages = {S8},
year = {2013},
url = {https://doi.org/10.1186/1752-0509-7-S2-S8},
doi = {10.1186/1752-0509-7-S2-S8},
timestamp = {Wed, 20 Jul 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/DengGW13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/DentN13,
author = {Jennifer E. Dent and
Christine Nardini},
title = {From desk to bed: Computational simulations provide indication for
rheumatoid arthritis clinical trials},
journal = {{BMC} Syst. Biol.},
volume = {7},
pages = {10},
year = {2013},
url = {https://doi.org/10.1186/1752-0509-7-10},
doi = {10.1186/1752-0509-7-10},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/DentN13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/EbrahimLPH13,
author = {Ali Ebrahim and
Joshua A. Lerman and
Bernhard {\O}. Palsson and
Daniel R. Hyduke},
title = {COBRApy: COnstraints-Based Reconstruction and Analysis for Python},
journal = {{BMC} Syst. Biol.},
volume = {7},
pages = {74},
year = {2013},
url = {https://doi.org/10.1186/1752-0509-7-74},
doi = {10.1186/1752-0509-7-74},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/EbrahimLPH13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/EisenhaberSW13,
author = {Frank Eisenhaber and
Wing{-}Kin Sung and
Limsoon Wong},
title = {International Conference on Genome Informatics {(GIW} 2013) in Singapore:
introduction to the systems biology contributions},
journal = {{BMC} Syst. Biol.},
volume = {7},
number = {{S-6}},
pages = {I1},
year = {2013},
url = {https://doi.org/10.1186/1752-0509-7-S6-I1},
doi = {10.1186/1752-0509-7-S6-I1},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/EisenhaberSW13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/ErgulerPD13,
author = {Kamil Erguler and
Myrtani Pieri and
Constantinos Deltas},
title = {A mathematical model of the unfolded protein stress response reveals
the decision mechanism for recovery, adaptation and apoptosis},
journal = {{BMC} Syst. Biol.},
volume = {7},
pages = {16},
year = {2013},
url = {https://doi.org/10.1186/1752-0509-7-16},
doi = {10.1186/1752-0509-7-16},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/ErgulerPD13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/FazekasKTMPDZSLFVCK13,
author = {D{\'{a}}vid Fazekas and
Mih{\'{a}}ly Koltai and
D{\'{e}}nes T{\"{u}}rei and
Dezs{\"{o}} M{\'{o}}dos and
M{\'{a}}t{\'{e}} P{\'{a}}lfy and
Zolt{\'{a}}n D{\'{u}}l and
Lilian Zs{\'{a}}kai and
M{\'{a}}t{\'{e}} Szalay{-}Beko and
Katalin Lenti and
Ill{\'{e}}s J. Farkas and
Tibor Vellai and
Peter Csermely and
Tam{\'{a}}s Korcsm{\'{a}}ros},
title = {SignaLink 2 - a signaling pathway resource with multi-layered regulatory
networks},
journal = {{BMC} Syst. Biol.},
volume = {7},
pages = {7},
year = {2013},
url = {https://doi.org/10.1186/1752-0509-7-7},
doi = {10.1186/1752-0509-7-7},
timestamp = {Sat, 09 Apr 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/FazekasKTMPDZSLFVCK13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/FeltusFGS13,
author = {F. Alex Feltus and
Stephen P. Ficklin and
Scott M. Gibson and
Melissa C. Smith},
title = {Maximizing capture of gene co-expression relationships through pre-clustering
of input expression samples: an Arabidopsis case study},
journal = {{BMC} Syst. Biol.},
volume = {7},
pages = {44},
year = {2013},
url = {https://doi.org/10.1186/1752-0509-7-44},
doi = {10.1186/1752-0509-7-44},
timestamp = {Wed, 05 Jan 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcsb/FeltusFGS13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/FlottmannKKK13,
author = {Max Fl{\"{o}}ttmann and
Falko Krause and
Edda Klipp and
Marcus Krantz},
title = {Reaction-contingency based bipartite Boolean modelling},
journal = {{BMC} Syst. Biol.},
volume = {7},
pages = {58},
year = {2013},
url = {https://doi.org/10.1186/1752-0509-7-58},
doi = {10.1186/1752-0509-7-58},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/FlottmannKKK13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/Freyre-GonzalezMMMPG13,
author = {Julio A. Freyre{-}Gonz{\'{a}}lez and
Alejandra M. Manjarrez{-}Casas and
Enrique Merino and
Mario Martinez{-}Nu{\~{n}}ez and
Ernesto P{\'{e}}rez{-}Rueda and
Rosa{-}Mar{\'{\i}}a Guti{\'{e}}rrez{-}R{\'{\i}}os},
title = {Lessons from the modular organization of the transcriptional regulatory
network of Bacillus subtilis},
journal = {{BMC} Syst. Biol.},
volume = {7},
pages = {127},
year = {2013},
url = {https://doi.org/10.1186/1752-0509-7-127},
doi = {10.1186/1752-0509-7-127},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcsb/Freyre-GonzalezMMMPG13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/GathererG13,
author = {Derek Gatherer and
Vashti Galpin},
title = {Rosen's (M, {R)} system in process algebra},
journal = {{BMC} Syst. Biol.},
volume = {7},
pages = {128},
year = {2013},
url = {https://doi.org/10.1186/1752-0509-7-128},
doi = {10.1186/1752-0509-7-128},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/GathererG13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/Gelius-DietrichDFL13,
author = {Gabriel Gelius{-}Dietrich and
Abdelmoneim Amer Desouki and
Claus Fritzemeier and
Martin J. Lercher},
title = {sybil - Efficient constraint-based modelling in {R}},
journal = {{BMC} Syst. Biol.},
volume = {7},
pages = {125},
year = {2013},
url = {https://doi.org/10.1186/1752-0509-7-125},
doi = {10.1186/1752-0509-7-125},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/Gelius-DietrichDFL13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/GhersiS13,
author = {Dario Ghersi and
Mona Singh},
title = {Disentangling function from topology to infer the network properties
of disease genes},
journal = {{BMC} Syst. Biol.},
volume = {7},
pages = {5},
year = {2013},
url = {https://doi.org/10.1186/1752-0509-7-5},
doi = {10.1186/1752-0509-7-5},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/GhersiS13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/GhoshBMAC13,
author = {Soma Ghosh and
Priyanka Baloni and
Sumanta Mukherjee and
Praveen Anand and
Nagasuma R. Chandra},
title = {A multi-level multi-scale approach to study essential genes in Mycobacterium
tuberculosis},
journal = {{BMC} Syst. Biol.},
volume = {7},
pages = {132},
year = {2013},
url = {https://doi.org/10.1186/1752-0509-7-132},
doi = {10.1186/1752-0509-7-132},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/GhoshBMAC13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/GoebelsF13,
author = {Florian Goebels and
Dmitrij Frishman},
title = {Prediction of protein interaction types based on sequence and network
features},
journal = {{BMC} Syst. Biol.},
volume = {7},
number = {{S-6}},
pages = {S5},
year = {2013},
url = {https://doi.org/10.1186/1752-0509-7-S6-S5},
doi = {10.1186/1752-0509-7-S6-S5},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/GoebelsF13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/Gong13,
author = {Haijun Gong},
title = {Analysis of intercellular signal transduction in the tumor microenvironment},
journal = {{BMC} Syst. Biol.},
volume = {7},
number = {{S-3}},
pages = {S5},
year = {2013},
url = {https://doi.org/10.1186/1752-0509-7-S3-S5},
doi = {10.1186/1752-0509-7-S3-S5},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/Gong13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/GonzalesKSM13,
author = {Kevin Gonzales and
{\"{O}}m{\"{u}}r Kayik{\c{c}}i and
David G. Schaeffer and
Paul M. Magwene},
title = {Modeling mutant phenotypes and oscillatory dynamics in the Saccharomyces
cerevisiae cAMP-PKA pathway},
journal = {{BMC} Syst. Biol.},
volume = {7},
pages = {40},
year = {2013},
url = {https://doi.org/10.1186/1752-0509-7-40},
doi = {10.1186/1752-0509-7-40},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/GonzalesKSM13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/Greenfest-AllenMPS13,
author = {Emily Greenfest{-}Allen and
Jeffrey Malik and
James Palis and
Christian J. Stoeckert Jr.},
title = {Stat and interferon genes identified by network analysis differentially
regulate primitive and definitive erythropoiesis},
journal = {{BMC} Syst. Biol.},
volume = {7},
pages = {38},
year = {2013},
url = {https://doi.org/10.1186/1752-0509-7-38},
doi = {10.1186/1752-0509-7-38},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/Greenfest-AllenMPS13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/Guillen-GosalbezMASJ13,
author = {Gonzalo Guill{\'{e}}n{-}Gos{\'{a}}lbez and
Antoni Mir{\'{o}} and
Rui Alves and
Albert Sorribas and
Laureano Jim{\'{e}}nez},
title = {Identification of regulatory structure and kinetic parameters of biochemical
networks via mixed-integer dynamic optimization},
journal = {{BMC} Syst. Biol.},
volume = {7},
pages = {113},
year = {2013},
url = {https://doi.org/10.1186/1752-0509-7-113},
doi = {10.1186/1752-0509-7-113},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcsb/Guillen-GosalbezMASJ13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/HakkinenTYIR13,
author = {Antti H{\"{a}}kkinen and
Huy Tran and
Olli Yli{-}Harja and
Brian P. Ingalls and
Andre S. Ribeiro},
title = {Effects of multimerization on the temporal variability of protein
complex abundance},
journal = {{BMC} Syst. Biol.},
volume = {7},
number = {{S-1}},
pages = {S3},
year = {2013},
url = {https://doi.org/10.1186/1752-0509-7-S1-S3},
doi = {10.1186/1752-0509-7-S1-S3},
timestamp = {Sat, 09 Apr 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/HakkinenTYIR13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/HasanKK13,
author = {Md Mahmudul Hasan and
Yusuf Kavurucu and
Tamer Kahveci},
title = {A scalable method for discovering significant subnetworks},
journal = {{BMC} Syst. Biol.},
volume = {7},
number = {{S-4}},
pages = {S3},
year = {2013},
url = {https://doi.org/10.1186/1752-0509-7-S4-S3},
doi = {10.1186/1752-0509-7-S4-S3},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/HasanKK13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/HassanFMHA13,
author = {Syeda Hassan and
Muhammad Farhan and
Rahul Mangayil and
Heikki Huttunen and
Tommi Aho},
title = {Bioprocess data mining using regularized regression and random forests},
journal = {{BMC} Syst. Biol.},
volume = {7},
number = {{S-1}},
pages = {S5},
year = {2013},
url = {https://doi.org/10.1186/1752-0509-7-S1-S5},
doi = {10.1186/1752-0509-7-S1-S5},
timestamp = {Thu, 13 Aug 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/HassanFMHA13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/HayashidaKSA13,
author = {Morihiro Hayashida and
Mayumi Kamada and
Jiangning Song and
Tatsuya Akutsu},
title = {Prediction of protein-RNA residue-base contacts using two-dimensional
conditional random field with the lasso},
journal = {{BMC} Syst. Biol.},
volume = {7},
number = {{S-2}},
pages = {S15},
year = {2013},
url = {https://doi.org/10.1186/1752-0509-7-S2-S15},
doi = {10.1186/1752-0509-7-S2-S15},
timestamp = {Fri, 09 Apr 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/HayashidaKSA13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/HeFW13,
author = {Fei He and
Vincent Fromion and
Hans V. Westerhoff},
title = {(Im)Perfect robustness and adaptation of metabolic networks subject
to metabolic and gene-expression regulation: marrying control engineering
with metabolic control analysis},
journal = {{BMC} Syst. Biol.},
volume = {7},
pages = {131},
year = {2013},
url = {https://doi.org/10.1186/1752-0509-7-131},
doi = {10.1186/1752-0509-7-131},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/HeFW13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/HettlingAHBGB13,
author = {Hannes Hettling and
David J. C. Alders and
Jaap Heringa and
Thomas W. Binsl and
A. B. Johan Groeneveld and
Johannes H. G. M. van Beek},
title = {Computational estimation of tricarboxylic acid cycle fluxes using
noisy {NMR} data from cardiac biopsies},
journal = {{BMC} Syst. Biol.},
volume = {7},
pages = {82},
year = {2013},
url = {https://doi.org/10.1186/1752-0509-7-82},
doi = {10.1186/1752-0509-7-82},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/HettlingAHBGB13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/HockNHWLTWPT13,
author = {Sabrina Hock and
Yen{-}Kar Ng and
Jan Hasenauer and
Dominik M. Wittmann and
Dominik Lutter and
Dietrich Tr{\"{u}}mbach and
Wolfgang Wurst and
Nilima Prakash and
Fabian J. Theis},
title = {Sharpening of expression domains induced by transcription and microRNA
regulation within a spatio-temporal model of mid-hindbrain boundary
formation},
journal = {{BMC} Syst. Biol.},
volume = {7},
pages = {48},
year = {2013},
url = {https://doi.org/10.1186/1752-0509-7-48},
doi = {10.1186/1752-0509-7-48},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcsb/HockNHWLTWPT13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/HoffmannS13,
author = {Max Hoffmann and
Ulrich S. Schwarz},
title = {A kinetic model for RNA-interference of focal adhesions},
journal = {{BMC} Syst. Biol.},
volume = {7},
pages = {2},
year = {2013},
url = {https://doi.org/10.1186/1752-0509-7-2},
doi = {10.1186/1752-0509-7-2},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/HoffmannS13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/HuLYCLHS13,
author = {Yangfan Hu and
Jinquan Li and
Wenying Yan and
Jiajia Chen and
Yin Li and
Guang Hu and
Bairong Shen},
title = {Identifying novel glioma associated pathways based on systems biology
level meta-analysis},
journal = {{BMC} Syst. Biol.},
volume = {7},
number = {{S-2}},
pages = {S9},
year = {2013},
url = {https://doi.org/10.1186/1752-0509-7-S2-S9},
doi = {10.1186/1752-0509-7-S2-S9},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/HuLYCLHS13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/HuMZ13,
author = {Xingchi Hu and
Chuang Ma and
Yanhong Zhou},
title = {A novel two-layer {SVM} model in miRNA Drosha processing site detection},
journal = {{BMC} Syst. Biol.},
volume = {7},
number = {{S-4}},
pages = {S4},
year = {2013},
url = {https://doi.org/10.1186/1752-0509-7-S4-S4},
doi = {10.1186/1752-0509-7-S4-S4},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/HuMZ13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/HuangWZ13,
author = {Qiang Huang and
Ling{-}Yun Wu and
Xiang{-}Sun Zhang},
title = {Corbi: a new {R} package for biological network alignment and querying},
journal = {{BMC} Syst. Biol.},
volume = {7},
number = {{S-2}},
pages = {S6},
year = {2013},
url = {https://doi.org/10.1186/1752-0509-7-S2-S6},
doi = {10.1186/1752-0509-7-S2-S6},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/HuangWZ13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/HusiSDMVOM13,
author = {Holger Husi and
Maria Sanchez{-}Ni{\~{n}}o and
Christian Delles and
William Mullen and
Antonia Vlahou and
Alberto Ortiz Arduan and
Harald Mischak},
title = {A combinatorial approach of Proteomics and Systems Biology in unravelling
the mechanisms of acute kidney injury {(AKI):} involvement of {NMDA}
receptor {GRIN1} in murine {AKI}},
journal = {{BMC} Syst. Biol.},
volume = {7},
pages = {110},
year = {2013},
url = {https://doi.org/10.1186/1752-0509-7-110},
doi = {10.1186/1752-0509-7-110},
timestamp = {Tue, 22 Mar 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcsb/HusiSDMVOM13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/IberG13,
author = {Dagmar Iber and
Christian Geyter},
title = {Computational modelling of bovine ovarian follicle development},
journal = {{BMC} Syst. Biol.},
volume = {7},
pages = {60},
year = {2013},
url = {https://doi.org/10.1186/1752-0509-7-60},
doi = {10.1186/1752-0509-7-60},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/IberG13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/ImamND13,
author = {Saheed Imam and
Daniel R. Noguera and
Timothy J. Donohue},
title = {Global insights into energetic and metabolic networks in Rhodobacter
sphaeroides},
journal = {{BMC} Syst. Biol.},
volume = {7},
pages = {89},
year = {2013},
url = {https://doi.org/10.1186/1752-0509-7-89},
doi = {10.1186/1752-0509-7-89},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/ImamND13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/IorioSB13,
author = {Francesco Iorio and
Julio Saez{-}Rodriguez and
Diego di Bernardo},
title = {Network based elucidation of drug response: from modulators to targets},
journal = {{BMC} Syst. Biol.},
volume = {7},
pages = {139},
year = {2013},
url = {https://doi.org/10.1186/1752-0509-7-139},
doi = {10.1186/1752-0509-7-139},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/IorioSB13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/IwataMTKGY13,
author = {Hiroaki Iwata and
Sayaka Mizutani and
Yasuo Tabei and
Masaaki Kotera and
Susumu Goto and
Yoshihiro Yamanishi},
title = {Inferring protein domains associated with drug side effects based
on drug-target interaction network},
journal = {{BMC} Syst. Biol.},
volume = {7},
number = {{S-6}},
pages = {S18},
year = {2013},
url = {https://doi.org/10.1186/1752-0509-7-S6-S18},
doi = {10.1186/1752-0509-7-S6-S18},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/IwataMTKGY13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/JinZ13,
author = {Suoqin Jin and
Xiufen Zou},
title = {Construction of the influenza {A} virus infection-induced cell-specific
inflammatory regulatory network based on mutual information and optimization},
journal = {{BMC} Syst. Biol.},
volume = {7},
pages = {105},
year = {2013},
url = {https://doi.org/10.1186/1752-0509-7-105},
doi = {10.1186/1752-0509-7-105},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/JinZ13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/JohnD13,
author = {Peter C. St. John and
Francis J. Doyle},
title = {Estimating confidence intervals in predicted responses for oscillatory
biological models},
journal = {{BMC} Syst. Biol.},
volume = {7},
pages = {71},
year = {2013},
url = {https://doi.org/10.1186/1752-0509-7-71},
doi = {10.1186/1752-0509-7-71},
timestamp = {Fri, 07 May 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/JohnD13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/JooPF13,
author = {Jaewook Joo and
Steven J. Plimpton and
Jean{-}Loup Faulon},
title = {Statistical ensemble analysis for simulating extrinsic noise-driven
response in NF-{\(\kappa\)}},
journal = {{BMC} Syst. Biol.},
volume = {7},
pages = {45},
year = {2013},
url = {https://doi.org/10.1186/1752-0509-7-45},
doi = {10.1186/1752-0509-7-45},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/JooPF13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/JordaSCPHGFAW13,
author = {Joel Jord{\`{a}} and
Camilo Suarez and
Marc Carnicer and
Angela ten Pierick and
Joseph J. Heijnen and
Walter M. van Gulik and
Pau Ferrer and
Joan Albiol and
Aljoscha Wahl},
title = {Glucose-methanol co-utilization in Pichia pastoris studied by metabolomics
and instationary \({}^{\mbox{13}}\)C flux analysis},
journal = {{BMC} Syst. Biol.},
volume = {7},
pages = {17},
year = {2013},
url = {https://doi.org/10.1186/1752-0509-7-17},
doi = {10.1186/1752-0509-7-17},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/JordaSCPHGFAW13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/KahramanogullariL13,
author = {Ozan Kahramanogullari and
James F. Lynch},
title = {Stochastic flux analysis of chemical reaction networks},
journal = {{BMC} Syst. Biol.},
volume = {7},
pages = {133},
year = {2013},
url = {https://doi.org/10.1186/1752-0509-7-133},
doi = {10.1186/1752-0509-7-133},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/KahramanogullariL13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/KellerDTFZARNHPZD13,
author = {Roland Keller and
Alexander D{\"{o}}rr and
Akito Tabira and
Akira Funahashi and
Michael J. Ziller and
Richard R. Adams and
Nicolas Rodriguez and
Nicolas Le Nov{\`{e}}re and
Noriko Hiroi and
Hannes Planatscher and
Andreas Zell and
Andreas Dr{\"{a}}ger},
title = {The systems biology simulation core algorithm},
journal = {{BMC} Syst. Biol.},
volume = {7},
pages = {55},
year = {2013},
url = {https://doi.org/10.1186/1752-0509-7-55},
doi = {10.1186/1752-0509-7-55},
timestamp = {Thu, 03 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/KellerDTFZARNHPZD13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/KimHZ13,
author = {Soo{-}Jin Kim and
JungWoo Ha and
Byoung{-}Tak Zhang},
title = {Constructing higher-order miRNA-mRNA interaction networks in prostate
cancer via hypergraph-based learning},
journal = {{BMC} Syst. Biol.},
volume = {7},
pages = {47},
year = {2013},
url = {https://doi.org/10.1186/1752-0509-7-47},
doi = {10.1186/1752-0509-7-47},
timestamp = {Mon, 05 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcsb/KimHZ13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/KimSJLK13,
author = {Dokyoon Kim and
Hyunjung Shin and
Je{-}Gun Joung and
Su{-}Yeon Lee and
Ju Han Kim},
title = {Intra-relation reconstruction from inter-relation: miRNA to gene expression},
journal = {{BMC} Syst. Biol.},
volume = {7},
number = {{S-3}},
pages = {S8},
year = {2013},
url = {https://doi.org/10.1186/1752-0509-7-S3-S8},
doi = {10.1186/1752-0509-7-S3-S8},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/KimSJLK13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/KlapaTTTM13,
author = {Maria I. Klapa and
Kalliopi Tsafou and
Evangelos Theodoridis and
Athanasios K. Tsakalidis and
Nicholas K. Moschonas},
title = {Reconstruction of the experimentally supported human protein interactome:
what can we learn?},
journal = {{BMC} Syst. Biol.},
volume = {7},
pages = {96},
year = {2013},
url = {https://doi.org/10.1186/1752-0509-7-96},
doi = {10.1186/1752-0509-7-96},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/KlapaTTTM13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/KnupferBDN13,
author = {Christian Kn{\"{u}}pfer and
Clemens Beckstein and
Peter Dittrich and
Nicolas Le Nov{\`{e}}re},
title = {Structure, function, and behaviour of computational models in systems
biology},
journal = {{BMC} Syst. Biol.},
volume = {7},
pages = {43},
year = {2013},
url = {https://doi.org/10.1186/1752-0509-7-43},
doi = {10.1186/1752-0509-7-43},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/KnupferBDN13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/KoteraTYMTKG13,
author = {Masaaki Kotera and
Yasuo Tabei and
Yoshihiro Yamanishi and
Yuki Moriya and
Toshiaki Tokimatsu and
Minoru Kanehisa and
Susumu Goto},
title = {{KCF-S:} {KEGG} Chemical Function and Substructure for improved interpretability
and prediction in chemical bioinformatics},
journal = {{BMC} Syst. Biol.},
volume = {7},
number = {{S-6}},
pages = {S2},
year = {2013},
url = {https://doi.org/10.1186/1752-0509-7-S6-S2},
doi = {10.1186/1752-0509-7-S6-S2},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/KoteraTYMTKG13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/KotzeASADWG13,
author = {Helen L. Kotze and
Emily G. Armitage and
Kieran J. Sharkey and
James William Allwood and
Warwick B. Dunn and
Kaye J. Williams and
Royston Goodacre},
title = {A novel untargeted metabolomics correlation-based network analysis
incorporating human metabolic reconstructions},
journal = {{BMC} Syst. Biol.},
volume = {7},
pages = {107},
year = {2013},
url = {https://doi.org/10.1186/1752-0509-7-107},
doi = {10.1186/1752-0509-7-107},
timestamp = {Sat, 05 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/KotzeASADWG13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/KrengelHTAJ13,
author = {Annette Krengel and
Jan Hauth and
Marja{-}Riitta Taskinen and
Martin Adiels and
Mats Jirstrand},
title = {A continuous-time adaptive particle filter for estimations under measurement
time uncertainties with an application to a plasma-leucine mixed effects
model},
journal = {{BMC} Syst. Biol.},
volume = {7},
pages = {8},
year = {2013},
url = {https://doi.org/10.1186/1752-0509-7-8},
doi = {10.1186/1752-0509-7-8},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/KrengelHTAJ13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/KrinnerRLS13,
author = {Axel Krinner and
Ingo Roeder and
Markus Loeffler and
Markus Scholz},
title = {Merging concepts - coupling an agent-based model of hematopoietic
stem cells with an {ODE} model of granulopoiesis},
journal = {{BMC} Syst. Biol.},
volume = {7},
pages = {117},
year = {2013},
url = {https://doi.org/10.1186/1752-0509-7-117},
doi = {10.1186/1752-0509-7-117},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/KrinnerRLS13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/KumarBR13,
author = {Gaurav Kumar and
Edmond J. Breen and
Shoba Ranganathan},
title = {Identification of ovarian cancer associated genes using an integrated
approach in a Boolean framework},
journal = {{BMC} Syst. Biol.},
volume = {7},
pages = {12},
year = {2013},
url = {https://doi.org/10.1186/1752-0509-7-12},
doi = {10.1186/1752-0509-7-12},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/KumarBR13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/KuoTT13,
author = {Tien{-}Chueh Kuo and
Tze{-}Feng Tian and
Yufeng Jane Tseng},
title = {3Omics: a web-based systems biology tool for analysis, integration
and visualization of human transcriptomic, proteomic and metabolomic
data},
journal = {{BMC} Syst. Biol.},
volume = {7},
pages = {64},
year = {2013},
url = {https://doi.org/10.1186/1752-0509-7-64},
doi = {10.1186/1752-0509-7-64},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/KuoTT13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/KupersteinCPVCBZ13,
author = {Inna Kuperstein and
David P. A. Cohen and
Stuart Pook and
Eric Viara and
Laurence Calzone and
Emmanuel Barillot and
Andrei Yu. Zinovyev},
title = {NaviCell: a web-based environment for navigation, curation and maintenance
of large molecular interaction maps},
journal = {{BMC} Syst. Biol.},
volume = {7},
pages = {100},
year = {2013},
url = {https://doi.org/10.1186/1752-0509-7-100},
doi = {10.1186/1752-0509-7-100},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/KupersteinCPVCBZ13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/KutumovaZSK13,
author = {Elena Kutumova and
Andrei Yu. Zinovyev and
Ruslan N. Sharipov and
Fedor A. Kolpakov},
title = {Model composition through model reduction: a combined model of {CD95}
and NF-{\(\kappa\)}},
journal = {{BMC} Syst. Biol.},
volume = {7},
pages = {13},
year = {2013},
url = {https://doi.org/10.1186/1752-0509-7-13},
doi = {10.1186/1752-0509-7-13},
timestamp = {Wed, 07 Dec 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcsb/KutumovaZSK13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/LasherRM13,
author = {Christopher D. Lasher and
Padmavathy Rajagopalan and
T. M. Murali},
title = {Summarizing cellular responses as biological process networks},
journal = {{BMC} Syst. Biol.},
volume = {7},
pages = {68},
year = {2013},
url = {https://doi.org/10.1186/1752-0509-7-68},
doi = {10.1186/1752-0509-7-68},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/LasherRM13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/LawlerHBC13,
author = {Katherine Lawler and
Kim E. Hammond{-}Kosack and
Alvis Brazma and
Richard M. R. Coulson},
title = {Genomic clustering and co-regulation of transcriptional networks in
the pathogenic fungus Fusarium graminearum},
journal = {{BMC} Syst. Biol.},
volume = {7},
pages = {52},
year = {2013},
url = {https://doi.org/10.1186/1752-0509-7-52},
doi = {10.1186/1752-0509-7-52},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/LawlerHBC13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/LeeHLCCYHLXC13,
author = {Yi{-}Ying Lee and
Chih{-}Yuan Hsu and
Ling{-}Jiun Lin and
Chih{-}Chun Chang and
Hsiao{-}Chun Cheng and
Tsung{-}Hsien Yeh and
Rei{-}Hsing Hu and
Che Lin and
Zhen Xie and
Bor{-}Sen Chen},
title = {Systematic design methodology for robust genetic transistors based
on {I/O} specifications via promoter-RBS libraries},
journal = {{BMC} Syst. Biol.},
volume = {7},
pages = {109},
year = {2013},
url = {https://doi.org/10.1186/1752-0509-7-109},
doi = {10.1186/1752-0509-7-109},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/LeeHLCCYHLXC13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/LeePK13,
author = {Minho Lee and
Keunwan Park and
Dongsup Kim},
title = {Interaction network among functional drug groups},
journal = {{BMC} Syst. Biol.},
volume = {7},
number = {{S-3}},
pages = {S4},
year = {2013},
url = {https://doi.org/10.1186/1752-0509-7-S3-S4},
doi = {10.1186/1752-0509-7-S3-S4},
timestamp = {Thu, 05 Aug 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/LeePK13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/LeonMP13,
author = {Miguel Ponce de Leon and
Francisco Montero and
Juli Peret{\'{o}}},
title = {Solving gap metabolites and blocked reactions in genome-scale models:
application to the metabolic network of Blattabacterium cuenoti},
journal = {{BMC} Syst. Biol.},
volume = {7},
pages = {114},
year = {2013},
url = {https://doi.org/10.1186/1752-0509-7-114},
doi = {10.1186/1752-0509-7-114},
timestamp = {Mon, 25 Apr 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/LeonMP13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/LiHZLW13,
author = {Pengping Li and
Xu Hua and
Zhen Zhang and
Jie Li and
Jin Wang},
title = {Characterization of regulatory features of housekeeping and tissue-specific
regulators within tissue regulatory networks},
journal = {{BMC} Syst. Biol.},
volume = {7},
pages = {112},
year = {2013},
url = {https://doi.org/10.1186/1752-0509-7-112},
doi = {10.1186/1752-0509-7-112},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/LiHZLW13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/LiJQCV13,
author = {Limin Li and
Hao Jiang and
Yushan Qiu and
Wai{-}Ki Ching and
Vassilios S. Vassiliadis},
title = {Discovery of metabolite biomarkers: flux analysis and reaction-reaction
network approach},
journal = {{BMC} Syst. Biol.},
volume = {7},
number = {{S-2}},
pages = {S13},
year = {2013},
url = {https://doi.org/10.1186/1752-0509-7-S2-S13},
doi = {10.1186/1752-0509-7-S2-S13},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/LiJQCV13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/LiLCW13,
author = {Jingyao Li and
Dongdong Lin and
Hongbao Cao and
Yu{-}Ping Wang},
title = {An improved sparse representation model with structural information
for Multicolour Fluorescence In-Situ Hybridization {(M-FISH)} image
classification},
journal = {{BMC} Syst. Biol.},
volume = {7},
number = {{S-4}},
pages = {S5},
year = {2013},
url = {https://doi.org/10.1186/1752-0509-7-S4-S5},
doi = {10.1186/1752-0509-7-S4-S5},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/LiLCW13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/LiLZXLZSQZCX13,
author = {Ke{-}ning Li and
Zi{-}hui Li and
Ning Zhao and
Yaoqun Xu and
Yongjing Liu and
Yuanshuai Zhou and
Desi Shang and
Fujun Qiu and
Rui Zhang and
Zhi{-}qiang Chang and
Yan Xu},
title = {Functional analysis of microRNA and transcription factor synergistic
regulatory network based on identifying regulatory motifs in non-small
cell lung cancer},
journal = {{BMC} Syst. Biol.},
volume = {7},
pages = {122},
year = {2013},
url = {https://doi.org/10.1186/1752-0509-7-122},
doi = {10.1186/1752-0509-7-122},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcsb/LiLZXLZSQZCX13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/LiN13,
author = {Yifeng Li and
Alioune Ngom},
title = {Sparse representation approaches for the classification of high-dimensional
biological data},
journal = {{BMC} Syst. Biol.},
volume = {7},
number = {{S-4}},
pages = {S6},
year = {2013},
url = {https://doi.org/10.1186/1752-0509-7-S4-S6},
doi = {10.1186/1752-0509-7-S4-S6},
timestamp = {Mon, 28 Nov 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcsb/LiN13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/LiTSYXBMZW13,
author = {Fuhai Li and
Hua Tan and
Jaykrishna Singh and
Jian Yang and
Xiaofeng Xia and
Jiguang Bao and
Jinwen Ma and
Ming Zhan and
Stephen T. C. Wong},
title = {A 3D multiscale model of cancer stem cell in tumor development},
journal = {{BMC} Syst. Biol.},
volume = {7},
number = {{S-2}},
pages = {S12},
year = {2013},
url = {https://doi.org/10.1186/1752-0509-7-S2-S12},
doi = {10.1186/1752-0509-7-S2-S12},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/LiTSYXBMZW13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/LiV13,
author = {Pu Li and
Quoc Dong Vu},
title = {Identification of parameter correlations for parameter estimation
in dynamic biological models},
journal = {{BMC} Syst. Biol.},
volume = {7},
pages = {91},
year = {2013},
url = {https://doi.org/10.1186/1752-0509-7-91},
doi = {10.1186/1752-0509-7-91},
timestamp = {Mon, 12 Oct 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/LiV13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/LiangZSGZ13,
author = {Shide Liang and
Dandan Zheng and
Daron M. Standley and
Huarong Guo and
Chi Zhang},
title = {A novel function prediction approach using protein overlap networks},
journal = {{BMC} Syst. Biol.},
volume = {7},
pages = {61},
year = {2013},
url = {https://doi.org/10.1186/1752-0509-7-61},
doi = {10.1186/1752-0509-7-61},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/LiangZSGZ13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/LiaoC13,
author = {Vance Chiang{-}Chi Liao and
Ming{-}Syan Chen},
title = {Efficient mining gapped sequential patterns for motifs in biological
sequences},
journal = {{BMC} Syst. Biol.},
volume = {7},
number = {{S-4}},
pages = {S7},
year = {2013},
url = {https://doi.org/10.1186/1752-0509-7-S4-S7},
doi = {10.1186/1752-0509-7-S4-S7},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/LiaoC13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/LiebalMMLW13,
author = {Ulf W. Liebal and
Thomas Millat and
Jon Marles{-}Wright and
Richard J. Lewis and
Olaf Wolkenhauer},
title = {Simulations of stressosome activation emphasize allosteric interactions
between RsbR and RsbT},
journal = {{BMC} Syst. Biol.},
volume = {7},
pages = {3},
year = {2013},
url = {https://doi.org/10.1186/1752-0509-7-3},
doi = {10.1186/1752-0509-7-3},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/LiebalMMLW13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/LiuDCN13,
author = {Yuanhua Liu and
Valentina Devescovi and
Suning Chen and
Christine Nardini},
title = {Multilevel omic data integration in cancer cell lines: advanced annotation
and emergent properties},
journal = {{BMC} Syst. Biol.},
volume = {7},
pages = {14},
year = {2013},
url = {https://doi.org/10.1186/1752-0509-7-14},
doi = {10.1186/1752-0509-7-14},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/LiuDCN13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/LiuYW13,
author = {Juan Liu and
Xinghuo Ye and
Fang{-}Xiang Wu},
title = {Characterizing dynamic regulatory programs in mouse lung development
and their potential association with tumourigenesis via miRNA-TF-mRNA
circuits},
journal = {{BMC} Syst. Biol.},
volume = {7},
number = {{S-2}},
pages = {S11},
year = {2013},
url = {https://doi.org/10.1186/1752-0509-7-S2-S11},
doi = {10.1186/1752-0509-7-S2-S11},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/LiuYW13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/LiuZSY13,
author = {Qi Liu and
Shilin Zhao and
Pei{-}Fang Su and
Shyr Yu},
title = {Gene and isoform expression signatures associated with tumor stage
in kidney renal clear cell carcinoma},
journal = {{BMC} Syst. Biol.},
volume = {7},
number = {{S-5}},
pages = {S7},
year = {2013},
url = {https://doi.org/10.1186/1752-0509-7-S5-S7},
doi = {10.1186/1752-0509-7-S5-S7},
timestamp = {Sun, 12 Nov 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcsb/LiuZSY13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/LopezPN13,
author = {Yosvany L{\'{o}}pez and
Ashwini Patil and
Kenta Nakai},
title = {Identification of novel motif patterns to decipher the promoter architecture
of co-expressed genes in Arabidopsis thaliana},
journal = {{BMC} Syst. Biol.},
volume = {7},
number = {{S-3}},
pages = {S10},
year = {2013},
url = {https://doi.org/10.1186/1752-0509-7-S3-S10},
doi = {10.1186/1752-0509-7-S3-S10},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/LopezPN13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/LopezYATTHVW13,
author = {Luis D. Lopez and
Jingyi Yu and
Cecilia N. Arighi and
Catalina O. Tudor and
Manabu Torii and
Hongzhan Huang and
K. Vijay{-}Shanker and
Cathy H. Wu},
title = {A framework for biomedical figure segmentation towards image-based
document retrieval},
journal = {{BMC} Syst. Biol.},
volume = {7},
number = {{S-4}},
pages = {S8},
year = {2013},
url = {https://doi.org/10.1186/1752-0509-7-S4-S8},
doi = {10.1186/1752-0509-7-S4-S8},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/LopezYATTHVW13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/LouhimoLHLMRMBLNH13,
author = {Riku Louhimo and
Marko Laakso and
Tuomas Heikkinen and
Susanna Laitinen and
Pekka Manninen and
Vladimir Rogojin and
Minna Miettinen and
Carl Blomqvist and
Jianjun Liu and
Heli Nevanlinna and
Sampsa Hautaniemi},
title = {Identification of genetic markers with synergistic survival effect
in cancer},
journal = {{BMC} Syst. Biol.},
volume = {7},
number = {{S-1}},
pages = {S2},
year = {2013},
url = {https://doi.org/10.1186/1752-0509-7-S1-S2},
doi = {10.1186/1752-0509-7-S1-S2},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/LouhimoLHLMRMBLNH13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/MaCFHC13,
author = {Chifeng Ma and
Hung{-}I Harry Chen and
Mario Flores and
Yufei Huang and
Yidong Chen},
title = {BRCA-Monet: a breast cancer specific drug treatment mode-of-action
network for treatment effective prediction using large scale microarray
database},
journal = {{BMC} Syst. Biol.},
volume = {7},
number = {{S-5}},
pages = {S5},
year = {2013},
url = {https://doi.org/10.1186/1752-0509-7-S5-S5},
doi = {10.1186/1752-0509-7-S5-S5},
timestamp = {Wed, 07 Dec 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcsb/MaCFHC13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/MadarDBZPA13,
author = {Daniel Madar and
Erez Dekel and
Anat Bren and
Anat Zimmer and
Ziv Porat and
Uri Alon},
title = {Promoter activity dynamics in the lag phase of Escherichia coli},
journal = {{BMC} Syst. Biol.},
volume = {7},
pages = {136},
year = {2013},
url = {https://doi.org/10.1186/1752-0509-7-136},
doi = {10.1186/1752-0509-7-136},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/MadarDBZPA13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/MarchisioCWS13,
author = {Mario A. Marchisio and
Moreno Colaiacovo and
Ellis Whitehead and
J{\"{o}}rg Stelling},
title = {Modular, rule-based modeling for the design of eukaryotic synthetic
gene circuits},
journal = {{BMC} Syst. Biol.},
volume = {7},
pages = {42},
year = {2013},
url = {https://doi.org/10.1186/1752-0509-7-42},
doi = {10.1186/1752-0509-7-42},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/MarchisioCWS13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/Martinez-PasamarAMMMGV13,
author = {Sara Martinez{-}Pasamar and
Elena Abad and
Beatriz Moreno and
Nieves V{\'{e}}lez de Mendiz{\'{a}}bal and
Ivan Martinez{-}Forero and
Jordi Garc{\'{\i}}a{-}Ojalvo and
Pablo Villoslada},
title = {Dynamic cross-regulation of antigen-specific effector and regulatory
{T} cell subpopulations and microglia in brain autoimmunity},
journal = {{BMC} Syst. Biol.},
volume = {7},
pages = {34},
year = {2013},
url = {https://doi.org/10.1186/1752-0509-7-34},
doi = {10.1186/1752-0509-7-34},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/Martinez-PasamarAMMMGV13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/MassucciDGMCMM13,
author = {Francesco Alessandro Massucci and
Mauro DiNuzzo and
Federico Giove and
Bruno Maraviglia and
Isaac P{\'{e}}rez Castillo and
Enzo Marinari and
Andrea De Martino},
title = {Energy metabolism and glutamate-glutamine cycle in the brain: a stoichiometric
modeling perspective},
journal = {{BMC} Syst. Biol.},
volume = {7},
pages = {103},
year = {2013},
url = {https://doi.org/10.1186/1752-0509-7-103},
doi = {10.1186/1752-0509-7-103},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/MassucciDGMCMM13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/MatsuokaMKENHGSLWWFKK13,
author = {Yukiko Matsuoka and
Hiromi Matsumae and
Manami Katoh and
Amie J. Eisfeld and
Gabriele Neumann and
Takeshi Hase and
Samik Ghosh and
Jason E. Shoemaker and
Tiago J. S. Lopes and
Tokiko Watanabe and
Shinji Watanabe and
Satoshi Fukuyama and
Hiroaki Kitano and
Yoshihiro Kawaoka},
title = {A comprehensive map of the influenza {A} virus replication cycle},
journal = {{BMC} Syst. Biol.},
volume = {7},
pages = {97},
year = {2013},
url = {https://doi.org/10.1186/1752-0509-7-97},
doi = {10.1186/1752-0509-7-97},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/MatsuokaMKENHGSLWWFKK13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/MayburdB13,
author = {Anatoly L. Mayburd and
Ancha V. Baranova},
title = {Knowledge-based compact disease models identify new molecular players
contributing to early-stage Alzheimer's disease},
journal = {{BMC} Syst. Biol.},
volume = {7},
pages = {121},
year = {2013},
url = {https://doi.org/10.1186/1752-0509-7-121},
doi = {10.1186/1752-0509-7-121},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/MayburdB13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/MimoriNKTOSYN13,
author = {Takahiro Mimori and
Naoki Nariai and
Kaname Kojima and
Mamoru Takahashi and
Akira Ono and
Yukuto Sato and
Yumi Yamaguchi{-}Kabata and
Masao Nagasaki},
title = {iSVP: an integrated structural variant calling pipeline from high-throughput
sequencing data},
journal = {{BMC} Syst. Biol.},
volume = {7},
number = {{S-6}},
pages = {S8},
year = {2013},
url = {https://doi.org/10.1186/1752-0509-7-S6-S8},
doi = {10.1186/1752-0509-7-S6-S8},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcsb/MimoriNKTOSYN13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/MisraS13,
author = {Ashish Misra and
Ganesh Sriram},
title = {Network component analysis provides quantitative insights on an Arabidopsis
transcription factor-gene regulatory network},
journal = {{BMC} Syst. Biol.},
volume = {7},
pages = {126},
year = {2013},
url = {https://doi.org/10.1186/1752-0509-7-126},
doi = {10.1186/1752-0509-7-126},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/MisraS13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/MohammadiSG13,
author = {Shahin Mohammadi and
Shankar Subramaniam and
Ananth Grama},
title = {Inferring the effective TOR-dependent network: a computational study
in yeast},
journal = {{BMC} Syst. Biol.},
volume = {7},
pages = {84},
year = {2013},
url = {https://doi.org/10.1186/1752-0509-7-84},
doi = {10.1186/1752-0509-7-84},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/MohammadiSG13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/MuellerBPM13,
author = {Thomas J. Mueller and
Bertram M. Berla and
Himadri B. Pakrasi and
Costas D. Maranas},
title = {Rapid construction of metabolic models for a family of Cyanobacteria
using a multiple source annotation workflow},
journal = {{BMC} Syst. Biol.},
volume = {7},
pages = {142},
year = {2013},
url = {https://doi.org/10.1186/1752-0509-7-142},
doi = {10.1186/1752-0509-7-142},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/MuellerBPM13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/NakatsuiAK13,
author = {Masahiko Nakatsui and
Michihiro Araki and
Akihiko Kondo},
title = {An approach for dynamical network reconstruction of simple network
motifs},
journal = {{BMC} Syst. Biol.},
volume = {7},
number = {{S-6}},
pages = {S4},
year = {2013},
url = {https://doi.org/10.1186/1752-0509-7-S6-S4},
doi = {10.1186/1752-0509-7-S6-S4},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/NakatsuiAK13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/NieY13,
author = {Yaling Nie and
Jingkai Yu},
title = {Mining breast cancer genes with a network based noise-tolerant approach},
journal = {{BMC} Syst. Biol.},
volume = {7},
pages = {49},
year = {2013},
url = {https://doi.org/10.1186/1752-0509-7-49},
doi = {10.1186/1752-0509-7-49},
timestamp = {Wed, 19 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/NieY13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/NilufarMLP13,
author = {Sharmin Nilufar and
Anne Morrow and
Jonathan Lee and
Theodore J. Perkins},
title = {FiloDetect: automatic detection of filopodia from fluorescence microscopy
images},
journal = {{BMC} Syst. Biol.},
volume = {7},
pages = {66},
year = {2013},
url = {https://doi.org/10.1186/1752-0509-7-66},
doi = {10.1186/1752-0509-7-66},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/NilufarMLP13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/NishioOIYUMT13,
author = {Yousuke Nishio and
Soichi Ogishima and
Masao Ichikawa and
Yohei Yamada and
Yoshihiro Usuda and
Tadashi Masuda and
Hiroshi Tanaka},
title = {Analysis of l-glutamic acid fermentation by using a dynamic metabolic
simulation model of Escherichia coli},
journal = {{BMC} Syst. Biol.},
volume = {7},
pages = {92},
year = {2013},
url = {https://doi.org/10.1186/1752-0509-7-92},
doi = {10.1186/1752-0509-7-92},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/NishioOIYUMT13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/NohSSHKJCKC13,
author = {Kyungchul Noh and
Kyung Soon Shin and
Dongkwan Shin and
Jae Yeon Hwang and
June Sic Kim and
Joon Hwan Jang and
Chun Kee Chung and
Jun Soo Kwon and
Kwang{-}Hyun Cho},
title = {Impaired coupling of local and global functional feedbacks underlies
abnormal synchronization and negative symptoms of schizophrenia},
journal = {{BMC} Syst. Biol.},
volume = {7},
pages = {30},
year = {2013},
url = {https://doi.org/10.1186/1752-0509-7-30},
doi = {10.1186/1752-0509-7-30},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/NohSSHKJCKC13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/OguzLCWBT13,
author = {Cihan Oguz and
Teeraphan Laomettachit and
Katherine C. Chen and
Layne T. Watson and
William T. Baumann and
John J. Tyson},
title = {Optimization and model reduction in the high dimensional parameter
space of a budding yeast cell cycle model},
journal = {{BMC} Syst. Biol.},
volume = {7},
pages = {53},
year = {2013},
url = {https://doi.org/10.1186/1752-0509-7-53},
doi = {10.1186/1752-0509-7-53},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/OguzLCWBT13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/OliveiraBBFIZ13,
author = {Juliana Oliveira and
Anderson de Brito and
Carla Braconi and
Caio de Melo Freire and
Atila Iamarino and
Paolo de Andrade Zanotto},
title = {Modularity and evolutionary constraints in a baculovirus gene regulatory
network},
journal = {{BMC} Syst. Biol.},
volume = {7},
pages = {87},
year = {2013},
url = {https://doi.org/10.1186/1752-0509-7-87},
doi = {10.1186/1752-0509-7-87},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcsb/OliveiraBBFIZ13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/OoiM13,
author = {Hsu Kiang Ooi and
Lan Ma},
title = {Modeling heterogeneous responsiveness of intrinsic apoptosis pathway},
journal = {{BMC} Syst. Biol.},
volume = {7},
pages = {65},
year = {2013},
url = {https://doi.org/10.1186/1752-0509-7-65},
doi = {10.1186/1752-0509-7-65},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/OoiM13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/OsterlundNBN13,
author = {Tobias {\"{O}}sterlund and
Intawat Nookaew and
Sergio Bordel and
Jens Nielsen},
title = {Mapping condition-dependent regulation of metabolism in yeast through
genome-scale modeling},
journal = {{BMC} Syst. Biol.},
volume = {7},
pages = {36},
year = {2013},
url = {https://doi.org/10.1186/1752-0509-7-36},
doi = {10.1186/1752-0509-7-36},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/OsterlundNBN13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/PalssonHBZJOSPV13,
author = {Sirus Palsson and
Timothy P. Hickling and
Erica L. Bradshaw{-}Pierce and
Michael Zager and
Karin Jooss and
Peter O'Brien and
Mary E. Spilker and
Bernhard {\O}. Palsson and
Paolo Vicini},
title = {The development of a fully-integrated immune response model {(FIRM)}
simulator of the immune response through integration of multiple subset
models},
journal = {{BMC} Syst. Biol.},
volume = {7},
pages = {95},
year = {2013},
url = {https://doi.org/10.1186/1752-0509-7-95},
doi = {10.1186/1752-0509-7-95},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/PalssonHBZJOSPV13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/PertsovskayaADGV13,
author = {Inna Pertsovskaya and
Elena Abad and
N{\'{u}}ria Domedel{-}Puig and
Jordi Garc{\'{\i}}a{-}Ojalvo and
Pablo Villoslada},
title = {Transient oscillatory dynamics of interferon beta signaling in macrophages},
journal = {{BMC} Syst. Biol.},
volume = {7},
pages = {59},
year = {2013},
url = {https://doi.org/10.1186/1752-0509-7-59},
doi = {10.1186/1752-0509-7-59},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/PertsovskayaADGV13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/PeyTCP13,
author = {Jon Pey and
Luis Tobalina and
Joaqu{\'{\i}}n Prada J. de Cisneros and
Francisco J. Planes},
title = {A network-based approach for predicting key enzymes explaining metabolite
abundance alterations in a disease phenotype},
journal = {{BMC} Syst. Biol.},
volume = {7},
pages = {62},
year = {2013},
url = {https://doi.org/10.1186/1752-0509-7-62},
doi = {10.1186/1752-0509-7-62},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/PeyTCP13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/PeyVRBP13,
author = {Jon Pey and
Kaspar Valgepea and
Angel Rubio and
John E. Beasley and
Francisco J. Planes},
title = {Integrating gene and protein expression data with genome-scale metabolic
networks to infer functional pathways},
journal = {{BMC} Syst. Biol.},
volume = {7},
pages = {134},
year = {2013},
url = {https://doi.org/10.1186/1752-0509-7-134},
doi = {10.1186/1752-0509-7-134},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/PeyVRBP13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/PinnaHFFK13,
author = {Andrea Pinna and
Sandra Heise and
Robert J. Flassig and
Alberto de la Fuente and
Steffen Klamt},
title = {Reconstruction of large-scale regulatory networks based on perturbation
graphs and transitive reduction: improved methods and their evaluation},
journal = {{BMC} Syst. Biol.},
volume = {7},
pages = {73},
year = {2013},
url = {https://doi.org/10.1186/1752-0509-7-73},
doi = {10.1186/1752-0509-7-73},
timestamp = {Mon, 08 Feb 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcsb/PinnaHFFK13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/PodsiadloWPRW13,
author = {Agnieszka Podsiadlo and
Mariusz Wrzesien and
Wieslaw Paja and
Witold R. Rudnicki and
Bartek Wilczynski},
title = {Active enhancer positions can be accurately predicted from chromatin
marks and collective sequence motif data},
journal = {{BMC} Syst. Biol.},
volume = {7},
number = {{S-6}},
pages = {S16},
year = {2013},
url = {https://doi.org/10.1186/1752-0509-7-S6-S16},
doi = {10.1186/1752-0509-7-S6-S16},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcsb/PodsiadloWPRW13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/PokhilkoMM13,
author = {Alexandra V. Pokhilko and
Paloma Mas and
Andrew J. Millar},
title = {Modelling the widespread effects of {TOC1} signalling on the plant
circadian clock and its outputs},
journal = {{BMC} Syst. Biol.},
volume = {7},
pages = {23},
year = {2013},
url = {https://doi.org/10.1186/1752-0509-7-23},
doi = {10.1186/1752-0509-7-23},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/PokhilkoMM13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/PradhanDP13,
author = {Meeta Pradhan and
Akshay Desai and
Mathew J. Palakal},
title = {Systems biology approach to stage-wise characterization of epigenetic
genes in lung adenocarcinoma},
journal = {{BMC} Syst. Biol.},
volume = {7},
pages = {141},
year = {2013},
url = {https://doi.org/10.1186/1752-0509-7-141},
doi = {10.1186/1752-0509-7-141},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/PradhanDP13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/QiWSHSXXC13,
author = {Ran Qi and
Dengyuan Wu and
Li Sheng and
Donald Henson and
Arnold M. Schwartz and
Eric Xu and
Kai Xing and
Dechang Chen},
title = {On an ensemble algorithm for clustering cancer patient data},
journal = {{BMC} Syst. Biol.},
volume = {7},
number = {{S-4}},
pages = {S9},
year = {2013},
url = {https://doi.org/10.1186/1752-0509-7-S4-S9},
doi = {10.1186/1752-0509-7-S4-S9},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/QiWSHSXXC13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/QureshiS13,
author = {Rehman Qureshi and
Ahmet Sacan},
title = {Weighted set enrichment of gene expression data},
journal = {{BMC} Syst. Biol.},
volume = {7},
number = {{S-4}},
pages = {S10},
year = {2013},
url = {https://doi.org/10.1186/1752-0509-7-S4-S10},
doi = {10.1186/1752-0509-7-S4-S10},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/QureshiS13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/RanLFLXLSCJLL13,
author = {Jihua Ran and
Hui Li and
Jianfeng Fu and
Ling Liu and
Yanchao Xing and
Xiumei Li and
Hongming Shen and
Yan Chen and
Xiaofang Jiang and
Yan Li and
Huiwu Li},
title = {Construction and analysis of the protein-protein interaction network
related to essential hypertension},
journal = {{BMC} Syst. Biol.},
volume = {7},
pages = {32},
year = {2013},
url = {https://doi.org/10.1186/1752-0509-7-32},
doi = {10.1186/1752-0509-7-32},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/RanLFLXLSCJLL13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/RanolaLLH13,
author = {John M. O. Ranola and
Peter Langfelder and
Kenneth Lange and
Steve Horvath},
title = {Cluster and propensity based approximation of a network},
journal = {{BMC} Syst. Biol.},
volume = {7},
pages = {21},
year = {2013},
url = {https://doi.org/10.1186/1752-0509-7-21},
doi = {10.1186/1752-0509-7-21},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/RanolaLLH13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/RasheedRB13,
author = {Zeehasham Rasheed and
Huzefa Rangwala and
Daniel Barbar{\'{a}}},
title = {16S rRNA metagenome clustering and diversity estimation using locality
sensitive hashing},
journal = {{BMC} Syst. Biol.},
volume = {7},
number = {{S-4}},
pages = {S11},
year = {2013},
url = {https://doi.org/10.1186/1752-0509-7-S4-S11},
doi = {10.1186/1752-0509-7-S4-S11},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/RasheedRB13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/RauJN13,
author = {Andrea Rau and
Florence Jaffr{\'{e}}zic and
Gr{\'{e}}gory Nuel},
title = {Joint estimation of causal effects from observational and intervention
gene expression data},
journal = {{BMC} Syst. Biol.},
volume = {7},
pages = {111},
year = {2013},
url = {https://doi.org/10.1186/1752-0509-7-111},
doi = {10.1186/1752-0509-7-111},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/RauJN13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/RaySY13,
author = {Debjit Ray and
Yongchun Su and
Ping Ye},
title = {Dynamic modeling of yeast meiotic initiation},
journal = {{BMC} Syst. Biol.},
volume = {7},
pages = {37},
year = {2013},
url = {https://doi.org/10.1186/1752-0509-7-37},
doi = {10.1186/1752-0509-7-37},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/RaySY13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/RenWLW13,
author = {Jun Ren and
Jianxin Wang and
Min Li and
Lusheng Wang},
title = {Identifying protein complexes based on density and modularity in protein-protein
interaction network},
journal = {{BMC} Syst. Biol.},
volume = {7},
number = {{S-4}},
pages = {S12},
year = {2013},
url = {https://doi.org/10.1186/1752-0509-7-S4-S12},
doi = {10.1186/1752-0509-7-S4-S12},
timestamp = {Fri, 21 Aug 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/RenWLW13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/RiemerRS13,
author = {S. Alexander Riemer and
Rene Rex and
Dietmar Schomburg},
title = {A metabolite-centric view on flux distributions in genome-scale metabolic
models},
journal = {{BMC} Syst. Biol.},
volume = {7},
pages = {33},
year = {2013},
url = {https://doi.org/10.1186/1752-0509-7-33},
doi = {10.1186/1752-0509-7-33},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/RiemerRS13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/Rodriguez-FernandezRKB13,
author = {Maria Rodriguez{-}Fernandez and
Markus Rehberg and
Andreas Kremling and
Julio R. Banga},
title = {Simultaneous model discrimination and parameter estimation in dynamic
models of cellular systems},
journal = {{BMC} Syst. Biol.},
volume = {7},
pages = {76},
year = {2013},
url = {https://doi.org/10.1186/1752-0509-7-76},
doi = {10.1186/1752-0509-7-76},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/Rodriguez-FernandezRKB13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/SaithongRKCSNSMC13,
author = {Treenut Saithong and
Oratai Rongsirikul and
Saowalak Kalapanulak and
Porntip Chiewchankaset and
Wanatsanan Siriwat and
Supatcharee Netrphan and
Malinee Suksangpanomrung and
Asawin Meechai and
Supapon Cheevadhanarak},
title = {Starch biosynthesis in cassava: a genome-based pathway reconstruction
and its exploitation in data integration},
journal = {{BMC} Syst. Biol.},
volume = {7},
pages = {75},
year = {2013},
url = {https://doi.org/10.1186/1752-0509-7-75},
doi = {10.1186/1752-0509-7-75},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/SaithongRKCSNSMC13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/SalernoCMBA13,
author = {Luca Salerno and
Carlo Cosentino and
Alessio Merola and
Declan G. Bates and
Francesco Amato},
title = {Validation of a model of the {GAL} regulatory system via robustness
analysis of its bistability characteristics},
journal = {{BMC} Syst. Biol.},
volume = {7},
pages = {39},
year = {2013},
url = {https://doi.org/10.1186/1752-0509-7-39},
doi = {10.1186/1752-0509-7-39},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/SalernoCMBA13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/Sands13,
author = {Tim Sands},
title = {Annual acknowledgement of reviewers},
journal = {{BMC} Syst. Biol.},
volume = {7},
pages = {35},
year = {2013},
url = {https://doi.org/10.1186/1752-0509-7-35},
doi = {10.1186/1752-0509-7-35},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/Sands13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/SantraKK13,
author = {Tapesh Santra and
Walter Kolch and
Boris N. Kholodenko},
title = {Integrating Bayesian variable selection with Modular Response Analysis
to infer biochemical network topology},
journal = {{BMC} Syst. Biol.},
volume = {7},
pages = {57},
year = {2013},
url = {https://doi.org/10.1186/1752-0509-7-57},
doi = {10.1186/1752-0509-7-57},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/SantraKK13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/SchaadtSHH13,
author = {Nadine S. Schaadt and
Anke Steinbach and
Rolf W. Hartmann and
Volkhard Helms},
title = {Rule-based regulatory and metabolic model for Quorum sensing in P.
aeruginosa},
journal = {{BMC} Syst. Biol.},
volume = {7},
pages = {81},
year = {2013},
url = {https://doi.org/10.1186/1752-0509-7-81},
doi = {10.1186/1752-0509-7-81},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/SchaadtSHH13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/SchittlerAB13,
author = {Daniella Schittler and
Frank Allg{\"{o}}wer and
Rob J. De Boer},
title = {A new model to simulate and analyze proliferating cell populations
in BrdU labeling experiments},
journal = {{BMC} Syst. Biol.},
volume = {7},
number = {{S-1}},
pages = {S4},
year = {2013},
url = {https://doi.org/10.1186/1752-0509-7-S1-S4},
doi = {10.1186/1752-0509-7-S1-S4},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/SchittlerAB13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/SchonbachSTR13,
author = {Christian Sch{\"{o}}nbach and
Bairong Shen and
Tin Wee Tan and
Shoba Ranganathan},
title = {InCoB2013 introduces Systems Biology as a major conference theme},
journal = {{BMC} Syst. Biol.},
volume = {7},
number = {{S-3}},
pages = {S1},
year = {2013},
url = {https://doi.org/10.1186/1752-0509-7-S3-S1},
doi = {10.1186/1752-0509-7-S3-S1},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/SchonbachSTR13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/SenVR13,
author = {Partho Sen and
Henri J. Vial and
Ovidiu Radulescu},
title = {Kinetic modelling of phospholipid synthesis in Plasmodium knowlesi
unravels crucial steps and relative importance of multiple pathways},
journal = {{BMC} Syst. Biol.},
volume = {7},
pages = {123},
year = {2013},
url = {https://doi.org/10.1186/1752-0509-7-123},
doi = {10.1186/1752-0509-7-123},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/SenVR13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/ShangGXCMOG13,
author = {Lei Shang and
David P. Gardner and
Weijia Xu and
Jamie J. Cannone and
Daniel P. Miranker and
Stuart Ozer and
Robin Ray Gutell},
title = {Two accurate sequence, structure, and phylogenetic template-based
{RNA} alignment systems},
journal = {{BMC} Syst. Biol.},
volume = {7},
number = {{S-4}},
pages = {S13},
year = {2013},
url = {https://doi.org/10.1186/1752-0509-7-S4-S13},
doi = {10.1186/1752-0509-7-S4-S13},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcsb/ShangGXCMOG13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/ShiGCSHCX13,
author = {Xu Shi and
Jinghua Gu and
Xi Chen and
Ayesha N. Shajahan and
Leena Hilakivi{-}Clarke and
Robert Clarke and
Jianhua Xuan},
title = {mAPC-GibbsOS: an integrated approach for robust identification of
gene regulatory networks},
journal = {{BMC} Syst. Biol.},
volume = {7},
number = {{S-5}},
pages = {S4},
year = {2013},
url = {https://doi.org/10.1186/1752-0509-7-S5-S4},
doi = {10.1186/1752-0509-7-S5-S4},
timestamp = {Thu, 19 Aug 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/ShiGCSHCX13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/ShiXZXLWZJGL13,
author = {Hongbo Shi and
Juan Xu and
Guangde Zhang and
Liangde Xu and
Chunquan Li and
Li Wang and
Zheng Zhao and
Wei Jiang and
Zheng Guo and
Xia Li},
title = {Walking the interactome to identify human miRNA-disease associations
through the functional link between miRNA targets and disease genes},
journal = {{BMC} Syst. Biol.},
volume = {7},
pages = {101},
year = {2013},
url = {https://doi.org/10.1186/1752-0509-7-101},
doi = {10.1186/1752-0509-7-101},
timestamp = {Fri, 19 Aug 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/ShiXZXLWZJGL13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/ShinCSHS13,
author = {Yong{-}Jun Shin and
Kai{-}Yuan Chen and
Ali H. Sayed and
Brandon Hencey and
Xiling Shen},
title = {Post-translational regulation enables robust p53 regulation},
journal = {{BMC} Syst. Biol.},
volume = {7},
pages = {83},
year = {2013},
url = {https://doi.org/10.1186/1752-0509-7-83},
doi = {10.1186/1752-0509-7-83},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/ShinCSHS13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/SimchaYAG13,
author = {David M. Simcha and
Laurent Younes and
Martin J. Aryee and
Donald Geman},
title = {Identification of direction in gene networks from expression and methylation},
journal = {{BMC} Syst. Biol.},
volume = {7},
pages = {118},
year = {2013},
url = {https://doi.org/10.1186/1752-0509-7-118},
doi = {10.1186/1752-0509-7-118},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcsb/SimchaYAG13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/SlawekA13,
author = {Janusz Slawek and
Tomasz Arodz},
title = {{ENNET:} inferring large gene regulatory networks from expression
data using gradient boosting},
journal = {{BMC} Syst. Biol.},
volume = {7},
pages = {106},
year = {2013},
url = {https://doi.org/10.1186/1752-0509-7-106},
doi = {10.1186/1752-0509-7-106},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/SlawekA13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/SmithS13,
author = {Graham R. Smith and
Daryl P. Shanley},
title = {Computational modelling of the regulation of Insulin signalling by
oxidative stress},
journal = {{BMC} Syst. Biol.},
volume = {7},
pages = {41},
year = {2013},
url = {https://doi.org/10.1186/1752-0509-7-41},
doi = {10.1186/1752-0509-7-41},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/SmithS13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/SohnKLK13,
author = {Kyung{-}Ah Sohn and
Dokyoon Kim and
Jaehyun Lim and
Ju Han Kim},
title = {Relative impact of multi-layered genomic data on gene expression phenotypes
in serous ovarian tumors},
journal = {{BMC} Syst. Biol.},
volume = {7},
number = {{S-6}},
pages = {S9},
year = {2013},
url = {https://doi.org/10.1186/1752-0509-7-S6-S9},
doi = {10.1186/1752-0509-7-S6-S9},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/SohnKLK13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/SrivastavaHBPA13,
author = {Prashant K. Srivastava and
Richard P. Hull and
Jacques Behmoaras and
Enrico Petretto and
Timothy J. Aitman},
title = {JunD/AP1 regulatory network analysis during macrophage activation
in a rat model of crescentic glomerulonephritis},
journal = {{BMC} Syst. Biol.},
volume = {7},
pages = {93},
year = {2013},
url = {https://doi.org/10.1186/1752-0509-7-93},
doi = {10.1186/1752-0509-7-93},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/SrivastavaHBPA13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/StobbeSTRKM13,
author = {Miranda D. Stobbe and
Morris A. Swertz and
Ines Thiele and
Trebor Rengaw and
Antoine H. C. van Kampen and
Perry D. Moerland},
title = {Consensus and conflict cards for metabolic pathway databases},
journal = {{BMC} Syst. Biol.},
volume = {7},
pages = {50},
year = {2013},
url = {https://doi.org/10.1186/1752-0509-7-50},
doi = {10.1186/1752-0509-7-50},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcsb/StobbeSTRKM13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/TabbaaNSHJ13,
author = {Omar P. Tabbaa and
German Nudelman and
Stuart C. Sealfon and
Fernand Hayot and
Ciriyam Jayaprakash},
title = {Noise propagation through extracellular signaling leads to fluctuations
in gene expression},
journal = {{BMC} Syst. Biol.},
volume = {7},
pages = {94},
year = {2013},
url = {https://doi.org/10.1186/1752-0509-7-94},
doi = {10.1186/1752-0509-7-94},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/TabbaaNSHJ13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/TabeiY13,
author = {Yasuo Tabei and
Yoshihiro Yamanishi},
title = {Scalable prediction of compound-protein interactions using minwise
hashing},
journal = {{BMC} Syst. Biol.},
volume = {7},
number = {{S-6}},
pages = {S3},
year = {2013},
url = {https://doi.org/10.1186/1752-0509-7-S6-S3},
doi = {10.1186/1752-0509-7-S6-S3},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/TabeiY13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/TangYCLKS13,
author = {Yifei Tang and
Wenying Yan and
Jiajia Chen and
Cheng Luo and
Antti Kaipia and
Bairong Shen},
title = {Identification of novel microRNA regulatory pathways associated with
heterogeneous prostate cancer},
journal = {{BMC} Syst. Biol.},
volume = {7},
number = {{S-3}},
pages = {S6},
year = {2013},
url = {https://doi.org/10.1186/1752-0509-7-S3-S6},
doi = {10.1186/1752-0509-7-S3-S6},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/TangYCLKS13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/TchitchekETJGBTWFTLNMSWBKK13,
author = {Nicolas Tchitchek and
Amie J. Eisfeld and
Jennifer Tisoncik{-}Go and
Laurence Josset and
Lisa E. Gralinski and
Christophe B{\'{e}}cavin and
Susan C. Tilton and
Bobbie{-}Jo M. Webb{-}Robertson and
Martin T. Ferris and
Allison L. Totura and
Chengjun Li and
Gabriele Neumann and
Thomas O. Metz and
Richard D. Smith and
Katrina M. Waters and
Ralph S. Baric and
Yoshihiro Kawaoka and
Michael G. Katze},
title = {Specific mutations in {H5N1} mainly impact the magnitude and velocity
of the host response in mice},
journal = {{BMC} Syst. Biol.},
volume = {7},
pages = {69},
year = {2013},
url = {https://doi.org/10.1186/1752-0509-7-69},
doi = {10.1186/1752-0509-7-69},
timestamp = {Mon, 03 Jan 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcsb/TchitchekETJGBTWFTLNMSWBKK13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/TessmerJCKC13,
author = {Oliver L. Tessmer and
Yuhua Jiao and
Jeffrey A. Cruz and
David M. Kramer and
Jin Chen},
title = {Functional approach to high-throughput plant growth analysis},
journal = {{BMC} Syst. Biol.},
volume = {7},
number = {{S-6}},
pages = {S17},
year = {2013},
url = {https://doi.org/10.1186/1752-0509-7-S6-S17},
doi = {10.1186/1752-0509-7-S6-S17},
timestamp = {Fri, 18 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/TessmerJCKC13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/TianFMM13,
author = {Zhongyuan Tian and
Adrien Faur{\'{e}} and
Hirotada Mori and
Hiroshi Matsuno},
title = {Identification of key regulators in glycogen utilization in E. coli
based on the simulations from a hybrid functional Petri net model},
journal = {{BMC} Syst. Biol.},
volume = {7},
number = {{S-6}},
pages = {S1},
year = {2013},
url = {https://doi.org/10.1186/1752-0509-7-S6-S1},
doi = {10.1186/1752-0509-7-S6-S1},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/TianFMM13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/TorchalaCKB13,
author = {Mieczyslaw Torchala and
Przemyslaw Chelminiak and
Michal Kurzynski and
Paul A. Bates},
title = {RaTrav: a tool for calculating mean first-passage times on biochemical
networks},
journal = {{BMC} Syst. Biol.},
volume = {7},
pages = {130},
year = {2013},
url = {https://doi.org/10.1186/1752-0509-7-130},
doi = {10.1186/1752-0509-7-130},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/TorchalaCKB13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/TreloarSHMLMB13,
author = {Katrina K. Treloar and
Matthew J. Simpson and
Parvathi Haridas and
Kerry J. Manton and
David I. Leavesley and
Donald L. S. McElwain and
Ruth E. Baker},
title = {Multiple types of data are required to identify the mechanisms influencing
the spatial expansion of melanoma cell colonies},
journal = {{BMC} Syst. Biol.},
volume = {7},
pages = {137},
year = {2013},
url = {https://doi.org/10.1186/1752-0509-7-137},
doi = {10.1186/1752-0509-7-137},
timestamp = {Sat, 09 Apr 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/TreloarSHMLMB13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/TrifonovPFR13,
author = {Vladimir Trifonov and
Laura Pasqualucci and
Riccardo Dalla Favera and
Raul Rabadan},
title = {MutComFocal: an integrative approach to identifying recurrent and
focal genomic alterations in tumor samples},
journal = {{BMC} Syst. Biol.},
volume = {7},
pages = {25},
year = {2013},
url = {https://doi.org/10.1186/1752-0509-7-25},
doi = {10.1186/1752-0509-7-25},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/TrifonovPFR13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/TrifonovPTFR13,
author = {Vladimir Trifonov and
Laura Pasqualucci and
Enrico Tiacci and
Brunangelo Falini and
Raul Rabadan},
title = {{SAVI:} a statistical algorithm for variant frequency identification},
journal = {{BMC} Syst. Biol.},
volume = {7},
number = {{S-2}},
pages = {S2},
year = {2013},
url = {https://doi.org/10.1186/1752-0509-7-S2-S2},
doi = {10.1186/1752-0509-7-S2-S2},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcsb/TrifonovPTFR13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/UdyavarHCZTLLCSSLFEEMQ13,
author = {Akshata R. Udyavar and
Megan D. Hoeksema and
Jonathan E. Clark and
Yong Zou and
Zuojian Tang and
Zhiguo Li and
Ming Li and
Heidi Chen and
Alexander R. Statnikov and
Yu Shyr and
Daniel C. Liebler and
John K. Field and
Rosana Eisenberg and
Lourdes Estrada and
Pierre P. Massion and
Vito Quaranta},
title = {Co-expression network analysis identifies Spleen Tyrosine Kinase {(SYK)}
as a candidate oncogenic driver in a subset of small-cell lung cancer},
journal = {{BMC} Syst. Biol.},
volume = {7},
number = {{S-5}},
pages = {S1},
year = {2013},
url = {https://doi.org/10.1186/1752-0509-7-S5-S1},
doi = {10.1186/1752-0509-7-S5-S1},
timestamp = {Sun, 12 Nov 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcsb/UdyavarHCZTLLCSSLFEEMQ13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/VafaeeRBJ13,
author = {Fatemeh Vafaee and
Daniela Rosu and
Fiona Broackes{-}Carter and
Igor Jurisica},
title = {Novel semantic similarity measure improves an integrative approach
to predicting gene functional associations},
journal = {{BMC} Syst. Biol.},
volume = {7},
pages = {22},
year = {2013},
url = {https://doi.org/10.1186/1752-0509-7-22},
doi = {10.1186/1752-0509-7-22},
timestamp = {Sat, 05 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/VafaeeRBJ13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/Vazquez13,
author = {Alexei Vazquez},
title = {Optimization of personalized therapies for anticancer treatment},
journal = {{BMC} Syst. Biol.},
volume = {7},
pages = {31},
year = {2013},
url = {https://doi.org/10.1186/1752-0509-7-31},
doi = {10.1186/1752-0509-7-31},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/Vazquez13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/Vital-LopezWR13,
author = {Francisco G. Vital{-}Lopez and
Anders Wallqvist and
Jaques Reifman},
title = {Bridging the gap between gene expression and metabolic phenotype via
kinetic models},
journal = {{BMC} Syst. Biol.},
volume = {7},
pages = {63},
year = {2013},
url = {https://doi.org/10.1186/1752-0509-7-63},
doi = {10.1186/1752-0509-7-63},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/Vital-LopezWR13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/VogtCS13,
author = {Torsten Vogt and
Tobias Czauderna and
Falk Schreiber},
title = {Translation of {SBGN} maps: Process Description to Activity Flow},
journal = {{BMC} Syst. Biol.},
volume = {7},
pages = {115},
year = {2013},
url = {https://doi.org/10.1186/1752-0509-7-115},
doi = {10.1186/1752-0509-7-115},
timestamp = {Sat, 05 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/VogtCS13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/WangCWW13,
author = {Hsiuying Wang and
Chia{-}Chun Chiu and
Yi{-}Ching Wu and
Wei{-}Sheng Wu},
title = {Shrinkage regression-based methods for microarray missing value imputation},
journal = {{BMC} Syst. Biol.},
volume = {7},
number = {{S-6}},
pages = {S11},
year = {2013},
url = {https://doi.org/10.1186/1752-0509-7-S6-S11},
doi = {10.1186/1752-0509-7-S6-S11},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/WangCWW13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/WangLCHLCC13,
author = {Yu{-}Chao Wang and
Che Lin and
Ming{-}Ta Chuang and
Wen{-}Ping Hsieh and
Chung{-}Yu Lan and
Yung{-}Jen Chuang and
Bor{-}Sen Chen},
title = {Interspecies protein-protein interaction network construction for
characterization of host-pathogen interactions: a Candida albicans-zebrafish
interaction study},
journal = {{BMC} Syst. Biol.},
volume = {7},
pages = {79},
year = {2013},
url = {https://doi.org/10.1186/1752-0509-7-79},
doi = {10.1186/1752-0509-7-79},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/WangLCHLCC13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/WangPXLP13,
author = {Jianxin Wang and
Xiaoqing Peng and
Qianghua Xiao and
Min Li and
Yi Pan},
title = {An effective method for refining predicted protein complexes based
on protein activity and the mechanism of protein complex formation},
journal = {{BMC} Syst. Biol.},
volume = {7},
pages = {28},
year = {2013},
url = {https://doi.org/10.1186/1752-0509-7-28},
doi = {10.1186/1752-0509-7-28},
timestamp = {Fri, 09 Apr 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/WangPXLP13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/WangVHPW13,
author = {Qinghua Wang and
Keerthi Venkataramanan and
Hongzhan Huang and
Eleftherios T. Papoutsakis and
Cathy H. Wu},
title = {Transcription factors and genetic circuits orchestrating the complex,
multilayered response of Clostridium acetobutylicum to butanol and
butyrate stress},
journal = {{BMC} Syst. Biol.},
volume = {7},
pages = {120},
year = {2013},
url = {https://doi.org/10.1186/1752-0509-7-120},
doi = {10.1186/1752-0509-7-120},
timestamp = {Wed, 10 Jan 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcsb/WangVHPW13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/WangXEFZ13,
author = {Vicky Wang and
Li Xi and
Ahmed Enayetallah and
Eric Fauman and
Daniel Ziemek},
title = {GeneTopics - interpretation of gene sets via literature-driven topic
models},
journal = {{BMC} Syst. Biol.},
volume = {7},
number = {{S-5}},
pages = {S10},
year = {2013},
url = {https://doi.org/10.1186/1752-0509-7-S5-S10},
doi = {10.1186/1752-0509-7-S5-S10},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcsb/WangXEFZ13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/WangZC13,
author = {Yong Wang and
Xiang{-}Sun Zhang and
Luonan Chen},
title = {Computational systems biology in the big data era},
journal = {{BMC} Syst. Biol.},
volume = {7},
number = {{S-2}},
pages = {S1},
year = {2013},
url = {https://doi.org/10.1186/1752-0509-7-S2-S1},
doi = {10.1186/1752-0509-7-S2-S1},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/WangZC13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/WangZL13,
author = {Jing Wang and
Dabing Zhang and
Jing Li},
title = {{PREAL:} prediction of allergenic protein by maximum Relevance Minimum
Redundancy (mRMR) feature selection},
journal = {{BMC} Syst. Biol.},
volume = {7},
number = {{S-5}},
pages = {S9},
year = {2013},
url = {https://doi.org/10.1186/1752-0509-7-S5-S9},
doi = {10.1186/1752-0509-7-S5-S9},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/WangZL13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/WeberB13,
author = {Marc Weber and
Javier Buceta},
title = {Dynamics of the quorum sensing switch: stochastic and non-stationary
effects},
journal = {{BMC} Syst. Biol.},
volume = {7},
pages = {6},
year = {2013},
url = {https://doi.org/10.1186/1752-0509-7-6},
doi = {10.1186/1752-0509-7-6},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/WeberB13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/WeberHVGZD13,
author = {Michael Weber and
Sebastian Henkel and
Sebastian Vlaic and
Reinhard Guthke and
Everardus J. van Zoelen and
Dominik Driesch},
title = {Inference of dynamical gene-regulatory networks based on time-resolved
multi-stimuli multi-experiment data applying NetGenerator {V2.0}},
journal = {{BMC} Syst. Biol.},
volume = {7},
pages = {1},
year = {2013},
url = {https://doi.org/10.1186/1752-0509-7-1},
doi = {10.1186/1752-0509-7-1},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/WeberHVGZD13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/WeberSKGZ13,
author = {Michael Weber and
Ana M. Sotoca and
Peter Kupfer and
Reinhard Guthke and
Everardus J. van Zoelen},
title = {Dynamic modelling of microRNA regulation during mesenchymal stem cell
differentiation},
journal = {{BMC} Syst. Biol.},
volume = {7},
pages = {124},
year = {2013},
url = {https://doi.org/10.1186/1752-0509-7-124},
doi = {10.1186/1752-0509-7-124},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/WeberSKGZ13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/WiditaM13,
author = {Chasanah Kusumastuti Widita and
Osamu Maruyama},
title = {PPSampler2: Predicting protein complexes more accurately and efficiently
by sampling},
journal = {{BMC} Syst. Biol.},
volume = {7},
number = {{S-6}},
pages = {S14},
year = {2013},
url = {https://doi.org/10.1186/1752-0509-7-S6-S14},
doi = {10.1186/1752-0509-7-S6-S14},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/WiditaM13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/Williams-DeVaneRHBHGE13,
author = {ClarLynda R. Williams{-}DeVane and
David M. Reif and
Elaine Cohen Hubal and
Pierre R. Bushel and
Edward E. Hudgens and
Jane E. Gallagher and
Stephen W. Edwards},
title = {Decision tree-based method for integrating gene expression, demographic,
and clinical data to determine disease endotypes},
journal = {{BMC} Syst. Biol.},
volume = {7},
pages = {119},
year = {2013},
url = {https://doi.org/10.1186/1752-0509-7-119},
doi = {10.1186/1752-0509-7-119},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcsb/Williams-DeVaneRHBHGE13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/WinklerF13,
author = {Jessica M. Winkler and
Howard S. Fox},
title = {Transcriptome meta-analysis reveals a central role for sex steroids
in the degeneration of hippocampal neurons in Alzheimer's disease},
journal = {{BMC} Syst. Biol.},
volume = {7},
pages = {51},
year = {2013},
url = {https://doi.org/10.1186/1752-0509-7-51},
doi = {10.1186/1752-0509-7-51},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/WinklerF13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/WinterbachMRWR13,
author = {Wynand Winterbach and
Piet Van Mieghem and
Marcel J. T. Reinders and
Huijuan Wang and
Dick de Ridder},
title = {Topology of molecular interaction networks},
journal = {{BMC} Syst. Biol.},
volume = {7},
pages = {90},
year = {2013},
url = {https://doi.org/10.1186/1752-0509-7-90},
doi = {10.1186/1752-0509-7-90},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/WinterbachMRWR13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/WintermuteLS13,
author = {Edwin H. Wintermute and
Tami D. Lieberman and
Pamela A. Silver},
title = {An objective function exploiting suboptimal solutions in metabolic
networks},
journal = {{BMC} Syst. Biol.},
volume = {7},
pages = {98},
year = {2013},
url = {https://doi.org/10.1186/1752-0509-7-98},
doi = {10.1186/1752-0509-7-98},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/WintermuteLS13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/WrzodekBRDZ13,
author = {Clemens Wrzodek and
Finja B{\"{u}}chel and
Manuel Ruff and
Andreas Dr{\"{a}}ger and
Andreas Zell},
title = {Precise generation of systems biology models from {KEGG} pathways},
journal = {{BMC} Syst. Biol.},
volume = {7},
pages = {15},
year = {2013},
url = {https://doi.org/10.1186/1752-0509-7-15},
doi = {10.1186/1752-0509-7-15},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/WrzodekBRDZ13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/WuGAJ13,
author = {Chao Wu and
Ranga Chandra Gudivada and
Bruce J. Aronow and
Anil G. Jegga},
title = {Computational drug repositioning through heterogeneous network clustering},
journal = {{BMC} Syst. Biol.},
volume = {7},
number = {{S-5}},
pages = {S6},
year = {2013},
url = {https://doi.org/10.1186/1752-0509-7-S5-S6},
doi = {10.1186/1752-0509-7-S5-S6},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/WuGAJ13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/WuSN13,
author = {Chengkun Wu and
Jean{-}Marc Schwartz and
Goran Nenadic},
title = {PathNER: a tool for systematic identification of biological pathway
mentions in the literature},
journal = {{BMC} Syst. Biol.},
volume = {7},
number = {{S-3}},
pages = {S2},
year = {2013},
url = {https://doi.org/10.1186/1752-0509-7-S3-S2},
doi = {10.1186/1752-0509-7-S3-S2},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/WuSN13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/WuSZT13,
author = {Qianqian Wu and
Kate Smith{-}Miles and
Tianshou Zhou and
Tianhai Tian},
title = {Stochastic modelling of biochemical systems of multi-step reactions
using a simplified two-variable model},
journal = {{BMC} Syst. Biol.},
volume = {7},
number = {{S-4}},
pages = {S14},
year = {2013},
url = {https://doi.org/10.1186/1752-0509-7-S4-S14},
doi = {10.1186/1752-0509-7-S4-S14},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/WuSZT13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/XiangQQH13,
author = {Zuoshuang Xiang and
Tingting Qin and
Zhaohui S. Qin and
Yongqun He},
title = {A genome-wide MeSH-based literature mining system predicts implicit
gene-to-gene relationships and networks},
journal = {{BMC} Syst. Biol.},
volume = {7},
number = {{S-3}},
pages = {S9},
year = {2013},
url = {https://doi.org/10.1186/1752-0509-7-S3-S9},
doi = {10.1186/1752-0509-7-S3-S9},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/XiangQQH13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/XuYTSWLL13,
author = {Huayong Xu and
Hui Yu and
Kang Tu and
Qianqian Shi and
Chaochun Wei and
Yuan{-}Yuan Li and
Yi{-}Xue Li},
title = {cGRNB: a web server for building combinatorial gene regulatory networks
through integrated engineering of seed-matching sequence information
and gene expression datasets},
journal = {{BMC} Syst. Biol.},
volume = {7},
number = {{S-2}},
pages = {S7},
year = {2013},
url = {https://doi.org/10.1186/1752-0509-7-S2-S7},
doi = {10.1186/1752-0509-7-S2-S7},
timestamp = {Thu, 27 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/XuYTSWLL13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/YangDMHJPD13,
author = {Ruoting Yang and
Bernie J. Daigle Jr. and
Seid Y. Muhie and
Rasha Hammamieh and
Marti Jett and
Linda R. Petzold and
Francis J. Doyle III},
title = {Core modular blood and brain biomarkers in social defeat mouse model
for post traumatic stress disorder},
journal = {{BMC} Syst. Biol.},
volume = {7},
pages = {80},
year = {2013},
url = {https://doi.org/10.1186/1752-0509-7-80},
doi = {10.1186/1752-0509-7-80},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/YangDMHJPD13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/YangW13,
author = {Tzu{-}Hsien Yang and
Wei{-}Sheng Wu},
title = {Inferring functional transcription factor-gene binding pairs by integrating
transcription factor binding data with transcription factor knockout
data},
journal = {{BMC} Syst. Biol.},
volume = {7},
number = {{S-6}},
pages = {S13},
year = {2013},
url = {https://doi.org/10.1186/1752-0509-7-S6-S13},
doi = {10.1186/1752-0509-7-S6-S13},
timestamp = {Sat, 09 Apr 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/YangW13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/YangZC13,
author = {Zhiyuan Yang and
Yan Zhang and
Luonan Chen},
title = {Investigation of anti-cancer mechanisms by comparative analysis of
naked mole rat and rat},
journal = {{BMC} Syst. Biol.},
volume = {7},
number = {{S-2}},
pages = {S5},
year = {2013},
url = {https://doi.org/10.1186/1752-0509-7-S2-S5},
doi = {10.1186/1752-0509-7-S2-S5},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/YangZC13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/YinV13,
author = {Weiwei Yin and
Eberhard O. Voit},
title = {Function and design of the Nox1 system in vascular smooth muscle cells},
journal = {{BMC} Syst. Biol.},
volume = {7},
pages = {20},
year = {2013},
url = {https://doi.org/10.1186/1752-0509-7-20},
doi = {10.1186/1752-0509-7-20},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/YinV13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/YlipaaY0N13,
author = {Antti Ylip{\"{a}}{\"{a}} and
Olli Yli{-}Harja and
Wei Zhang and
Matti Nykter},
title = {Characterization of aberrant pathways across human cancers},
journal = {{BMC} Syst. Biol.},
volume = {7},
number = {{S-1}},
pages = {S1},
year = {2013},
url = {https://doi.org/10.1186/1752-0509-7-S1-S1},
doi = {10.1186/1752-0509-7-S1-S1},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/YlipaaY0N13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/YoshidaMKK13,
author = {Kenta Yoshida and
Kazuya Maeda and
Hiroyuki Kusuhara and
Akihiko Konagaya},
title = {Estimation of feasible solution space using Cluster Newton Method:
application to pharmacokinetic analysis of irinotecan with physiologically-based
pharmacokinetic models},
journal = {{BMC} Syst. Biol.},
volume = {7},
number = {{S-3}},
pages = {S3},
year = {2013},
url = {https://doi.org/10.1186/1752-0509-7-S3-S3},
doi = {10.1186/1752-0509-7-S3-S3},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/YoshidaMKK13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/YousofshahiOLH13,
author = {Mona Yousofshahi and
Michael Orshansky and
Kyongbum Lee and
Soha Hassoun},
title = {Probabilistic strain optimization under constraint uncertainty},
journal = {{BMC} Syst. Biol.},
volume = {7},
pages = {29},
year = {2013},
url = {https://doi.org/10.1186/1752-0509-7-29},
doi = {10.1186/1752-0509-7-29},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcsb/YousofshahiOLH13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/YousofshahiUSH13,
author = {Mona Yousofshahi and
Ehsan Ullah and
Russell Stern and
Soha Hassoun},
title = {MC\({}^{\mbox{3}}\): a steady-state model and constraint consistency
checker for biochemical networks},
journal = {{BMC} Syst. Biol.},
volume = {7},
pages = {129},
year = {2013},
url = {https://doi.org/10.1186/1752-0509-7-129},
doi = {10.1186/1752-0509-7-129},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/YousofshahiUSH13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/YuLLZ13,
author = {Hui Yu and
Chen{-}Ching Lin and
Yuan{-}Yuan Li and
Zhongming Zhao},
title = {Dynamic protein interaction modules in human hepatocellular carcinoma
progression},
journal = {{BMC} Syst. Biol.},
volume = {7},
number = {{S-5}},
pages = {S2},
year = {2013},
url = {https://doi.org/10.1186/1752-0509-7-S5-S2},
doi = {10.1186/1752-0509-7-S5-S2},
timestamp = {Thu, 27 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/YuLLZ13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/YvertONIFSO13,
author = {Ga{\"{e}}l Yvert and
Shinsuke Ohnuki and
Satoru Nogami and
Yasutaka Imanaga and
Steffen Fehrmann and
Joseph Schacherer and
Yoshikazu Ohya},
title = {Single-cell phenomics reveals intra-species variation of phenotypic
noise in yeast},
journal = {{BMC} Syst. Biol.},
volume = {7},
pages = {54},
year = {2013},
url = {https://doi.org/10.1186/1752-0509-7-54},
doi = {10.1186/1752-0509-7-54},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/YvertONIFSO13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/ZhangGS13,
author = {Xia Zhang and
M. Heather West Greenlee and
Jeanne M. Serb},
title = {EnRICH: Extraction and Ranking using Integration and Criteria Heuristics},
journal = {{BMC} Syst. Biol.},
volume = {7},
pages = {4},
year = {2013},
url = {https://doi.org/10.1186/1752-0509-7-4},
doi = {10.1186/1752-0509-7-4},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/ZhangGS13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/ZhangLLLLLSDHX13,
author = {Hao Zhang and
Zhi Li and
Yanpu Li and
Yuanning Liu and
Junxin Liu and
Xin Li and
Tingjie Shen and
Yunna Duan and
Minggang Hu and
Dong Xu},
title = {A computational method for predicting regulation of human microRNAs
on the influenza virus genome},
journal = {{BMC} Syst. Biol.},
volume = {7},
number = {{S-2}},
pages = {S3},
year = {2013},
url = {https://doi.org/10.1186/1752-0509-7-S2-S3},
doi = {10.1186/1752-0509-7-S2-S3},
timestamp = {Wed, 07 Dec 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcsb/ZhangLLLLLSDHX13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/ZhangWMD13,
author = {Fan Zhang and
Mu Wang and
Tran Michael and
Renee Drabier},
title = {Novel alternative splicing isoform biomarkers identification from
high-throughput plasma proteomics profiling of breast cancer},
journal = {{BMC} Syst. Biol.},
volume = {7},
number = {{S-5}},
pages = {S8},
year = {2013},
url = {https://doi.org/10.1186/1752-0509-7-S5-S8},
doi = {10.1186/1752-0509-7-S5-S8},
timestamp = {Fri, 04 Dec 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcsb/ZhangWMD13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/ZhangZDS13,
author = {Shaoqiang Zhang and
Xiguo Zhou and
Chuanbin Du and
Zhengchang Su},
title = {{SPIC:} {A} novel similarity metric for comparing transcription factor
binding site motifs based on information contents},
journal = {{BMC} Syst. Biol.},
volume = {7},
number = {{S-2}},
pages = {S14},
year = {2013},
url = {https://doi.org/10.1186/1752-0509-7-S2-S14},
doi = {10.1186/1752-0509-7-S2-S14},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/ZhangZDS13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/ZhangZWZ13,
author = {Junhua Zhang and
Shi{-}Hua Zhang and
Yong Wang and
Xiang{-}Sun Zhang},
title = {Identification of mutated core cancer modules by integrating somatic
mutation, copy number variation, and gene expression data},
journal = {{BMC} Syst. Biol.},
volume = {7},
number = {{S-2}},
pages = {S4},
year = {2013},
url = {https://doi.org/10.1186/1752-0509-7-S2-S4},
doi = {10.1186/1752-0509-7-S2-S4},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/ZhangZWZ13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/ZhouRHGJFYWW13,
author = {Hufeng Zhou and
Javad Rezaei and
Hugo Willy and
Shangzhi Gao and
Jingjing Jin and
Mengyuan Fan and
Chern Han Yong and
Michal Wozniak and
Limsoon Wong},
title = {Stringent DDI-based Prediction of H. sapiens-M. tuberculosis H37Rv
Protein-Protein Interactions},
journal = {{BMC} Syst. Biol.},
volume = {7},
number = {{S-6}},
pages = {S6},
year = {2013},
url = {https://doi.org/10.1186/1752-0509-7-S6-S6},
doi = {10.1186/1752-0509-7-S6-S6},
timestamp = {Mon, 16 Nov 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcsb/ZhouRHGJFYWW13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/ZhouVWWWBO13,
author = {Yi Zhou and
Alexei Vazquez and
Aaron Wise and
Tomoko Warita and
Katsuhiko Warita and
Ziv Bar{-}Joseph and
Zolt{\'{a}}n N. Oltvai},
title = {Carbon catabolite repression correlates with the maintenance of near
invariant molecular crowding in proliferating E. coli cells},
journal = {{BMC} Syst. Biol.},
volume = {7},
pages = {138},
year = {2013},
url = {https://doi.org/10.1186/1752-0509-7-138},
doi = {10.1186/1752-0509-7-138},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/ZhouVWWWBO13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/Alam-NazkiK12,
author = {Aiman Alam{-}Nazki and
Jawahar Krishnan},
title = {An investigation of spatial signal transduction in cellular networks},
journal = {{BMC} Syst. Biol.},
volume = {6},
pages = {83},
year = {2012},
url = {https://doi.org/10.1186/1752-0509-6-83},
doi = {10.1186/1752-0509-6-83},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/Alam-NazkiK12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/AlshalalfaBGMA12,
author = {Mohammed Alshalalfa and
Gary D. Bader and
Anna Goldenberg and
Quaid Morris and
Reda Alhajj},
title = {Detecting microRNAs of high influence on protein functional interaction
networks: a prostate cancer case study},
journal = {{BMC} Syst. Biol.},
volume = {6},
pages = {112},
year = {2012},
url = {https://doi.org/10.1186/1752-0509-6-112},
doi = {10.1186/1752-0509-6-112},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/AlshalalfaBGMA12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/AslamS12,
author = {Naveed Aslam and
Harel Z. Shouval},
title = {Regulation of cytoplasmic polyadenylation can generate a bistable
switch},
journal = {{BMC} Syst. Biol.},
volume = {6},
pages = {12},
year = {2012},
url = {https://doi.org/10.1186/1752-0509-6-12},
doi = {10.1186/1752-0509-6-12},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/AslamS12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/AuleyWJK12,
author = {Mark Mc Auley and
Darren J. Wilkinson and
Janette Jones and
Thomas B. L. Kirkwood},
title = {A whole-body mathematical model of cholesterol metabolism and its
age-associated dysregulation},
journal = {{BMC} Syst. Biol.},
volume = {6},
pages = {130},
year = {2012},
url = {https://doi.org/10.1186/1752-0509-6-130},
doi = {10.1186/1752-0509-6-130},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/AuleyWJK12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/BazzaniHH12,
author = {Susanna Bazzani and
Andreas Hoppe and
Hermann{-}Georg Holzh{\"{u}}tter},
title = {Network-based assessment of the selectivity of metabolic drug targets
in Plasmodium falciparum with respect to human liver metabolism},
journal = {{BMC} Syst. Biol.},
volume = {6},
pages = {118},
year = {2012},
url = {https://doi.org/10.1186/1752-0509-6-118},
doi = {10.1186/1752-0509-6-118},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/BazzaniHH12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/Beguerisse-DiazHLBD12,
author = {Mariano Beguerisse{-}D{\'{\i}}az and
Mercedes C. Hern{\'{a}}ndez{-}G{\'{o}}mez and
Alessandro M. Lizzul and
Mauricio Barahona and
Radhika Desikan},
title = {Compound stress response in stomatal closure: a mathematical model
of {ABA} and ethylene interaction in guard cells},
journal = {{BMC} Syst. Biol.},
volume = {6},
pages = {146},
year = {2012},
url = {https://doi.org/10.1186/1752-0509-6-146},
doi = {10.1186/1752-0509-6-146},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/Beguerisse-DiazHLBD12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/BeisserGKFSHDKDM12,
author = {Daniela Beisser and
Markus A. Grohme and
Joachim Kopka and
Marcus Frohme and
Ralph O. Schill and
Steffen Hengherr and
Thomas Dandekar and
Gunnar W. Klau and
Marcus T. Dittrich and
Tobias M{\"{u}}ller},
title = {Integrated pathway modules using time-course metabolic profiles and
{EST} data from Milnesium tardigradum},
journal = {{BMC} Syst. Biol.},
volume = {6},
pages = {72},
year = {2012},
url = {https://doi.org/10.1186/1752-0509-6-72},
doi = {10.1186/1752-0509-6-72},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcsb/BeisserGKFSHDKDM12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/Ben-HamoE12,
author = {Rotem Ben{-}Hamo and
Sol Efroni},
title = {Biomarker robustness reveals the {PDGF} network as driving disease
outcome in ovarian cancer patients in multiple studies},
journal = {{BMC} Syst. Biol.},
volume = {6},
pages = {3},
year = {2012},
url = {https://doi.org/10.1186/1752-0509-6-3},
doi = {10.1186/1752-0509-6-3},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/Ben-HamoE12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/BiliourisBSK12,
author = {Konstantinos Biliouris and
David Babson and
Claudia Schmidt{-}Dannert and
Yiannis N. Kaznessis},
title = {Stochastic simulations of a synthetic bacteria-yeast ecosystem},
journal = {{BMC} Syst. Biol.},
volume = {6},
pages = {58},
year = {2012},
url = {https://doi.org/10.1186/1752-0509-6-58},
doi = {10.1186/1752-0509-6-58},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/BiliourisBSK12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/BirtwistleRKADHKOK12,
author = {Marc R. Birtwistle and
Jens Rauch and
Anatoly Kiyatkin and
Edita Aksamitiene and
Maciej Dobrzynski and
Jan B. Hoek and
Walter Kolch and
Babatunde A. Ogunnaike and
Boris N. Kholodenko},
title = {Emergence of bimodal cell population responses from the interplay
between analog single-cell signaling and protein expression noise},
journal = {{BMC} Syst. Biol.},
volume = {6},
pages = {109},
year = {2012},
url = {https://doi.org/10.1186/1752-0509-6-109},
doi = {10.1186/1752-0509-6-109},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/BirtwistleRKADHKOK12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/BoeleOT12,
author = {Joost Boele and
Brett G. Olivier and
Bas Teusink},
title = {FAME, the Flux Analysis and Modeling Environment},
journal = {{BMC} Syst. Biol.},
volume = {6},
pages = {8},
year = {2012},
url = {https://doi.org/10.1186/1752-0509-6-8},
doi = {10.1186/1752-0509-6-8},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/BoeleOT12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/BosiaOBCC12,
author = {Carla Bosia and
Matteo Osella and
Mariama El Baroudi and
Davide Cor{\`{a}} and
Michele Caselle},
title = {Gene autoregulation via intronic microRNAs and its functions},
journal = {{BMC} Syst. Biol.},
volume = {6},
pages = {131},
year = {2012},
url = {https://doi.org/10.1186/1752-0509-6-131},
doi = {10.1186/1752-0509-6-131},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/BosiaOBCC12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/BravoOME12,
author = {Maria Bravo and
Thomas Orfeo and
Kenneth G. Mann and
Stephen J. Everse},
title = {Modeling of human factor Va inactivation by activated protein {C}},
journal = {{BMC} Syst. Biol.},
volume = {6},
pages = {45},
year = {2012},
url = {https://doi.org/10.1186/1752-0509-6-45},
doi = {10.1186/1752-0509-6-45},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/BravoOME12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/BrettnerM12,
author = {Leandra M. Brettner and
Joanna Masel},
title = {Protein stickiness, rather than number of functional protein-protein
interactions, predicts expression noise and plasticity in yeast},
journal = {{BMC} Syst. Biol.},
volume = {6},
pages = {128},
year = {2012},
url = {https://doi.org/10.1186/1752-0509-6-128},
doi = {10.1186/1752-0509-6-128},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/BrettnerM12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/BrownL12,
author = {Sherry{-}Ann Brown and
Leslie M. Loew},
title = {Computational analysis of calcium signaling and membrane electrophysiology
in cerebellar Purkinje neurons associated with ataxia},
journal = {{BMC} Syst. Biol.},
volume = {6},
pages = {70},
year = {2012},
url = {https://doi.org/10.1186/1752-0509-6-70},
doi = {10.1186/1752-0509-6-70},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcsb/BrownL12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/ByrneDS12,
author = {David Byrne and
Alexandra Dumitriu and
Daniel Segr{\`{e}}},
title = {Comparative multi-goal tradeoffs in systems engineering of microbial
metabolism},
journal = {{BMC} Syst. Biol.},
volume = {6},
pages = {127},
year = {2012},
url = {https://doi.org/10.1186/1752-0509-6-127},
doi = {10.1186/1752-0509-6-127},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/ByrneDS12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/CaiHGLKW12,
author = {Hong Cai and
Changjin Hong and
Jianying Gu and
Timothy G. Lilburn and
Rui Kuang and
Yufeng Wang},
title = {Module-based subnetwork alignments reveal novel transcriptional regulators
in malaria parasite Plasmodium falciparum},
journal = {{BMC} Syst. Biol.},
volume = {6},
number = {{S-3}},
pages = {S5},
year = {2012},
url = {https://doi.org/10.1186/1752-0509-6-S3-S5},
doi = {10.1186/1752-0509-6-S3-S5},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/CaiHGLKW12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/CaiWZ012,
author = {Bingjing Cai and
Haiying Wang and
Huiru Zheng and
Hui Wang},
title = {Detection of protein complexes from affinity purification/mass spectrometry
data},
journal = {{BMC} Syst. Biol.},
volume = {6},
number = {{S-3}},
pages = {S4},
year = {2012},
url = {https://doi.org/10.1186/1752-0509-6-S3-S4},
doi = {10.1186/1752-0509-6-S3-S4},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/CaiWZ012.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/CarbonellFPF12,
author = {Pablo Carbonell and
Davide Fichera and
Shashi Bhushan Pandit and
Jean{-}Loup Faulon},
title = {Enumerating metabolic pathways for the production of heterologous
target chemicals in chassis organisms},
journal = {{BMC} Syst. Biol.},
volume = {6},
pages = {10},
year = {2012},
url = {https://doi.org/10.1186/1752-0509-6-10},
doi = {10.1186/1752-0509-6-10},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/CarbonellFPF12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/CaspetaSANN12,
author = {Luis Caspeta and
Saeed Shoaie and
Rasmus Agren and
Intawat Nookaew and
Jens Nielsen},
title = {Genome-scale metabolic reconstructions of Pichia stipitis and Pichia
pastoris and in silico evaluation of their potentials},
journal = {{BMC} Syst. Biol.},
volume = {6},
pages = {24},
year = {2012},
url = {https://doi.org/10.1186/1752-0509-6-24},
doi = {10.1186/1752-0509-6-24},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/CaspetaSANN12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/ChavaliBTJPP12,
author = {Arvind K. Chavali and
Anna S. Blazier and
Jose L. Tlaxca and
Paul A. Jensen and
Richard D. Pearson and
Jason A. Papin},
title = {Metabolic network analysis predicts efficacy of FDA-approved drugs
targeting the causative agent of a neglected tropical disease},
journal = {{BMC} Syst. Biol.},
volume = {6},
pages = {27},
year = {2012},
url = {https://doi.org/10.1186/1752-0509-6-27},
doi = {10.1186/1752-0509-6-27},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/ChavaliBTJPP12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/ChemmangattuvalappilTB12,
author = {Nishanth G. Chemmangattuvalappil and
Keith Task and
Ipsita Banerjee},
title = {An integer optimization algorithm for robust identification of non-linear
gene regulatory networks},
journal = {{BMC} Syst. Biol.},
volume = {6},
pages = {119},
year = {2012},
url = {https://doi.org/10.1186/1752-0509-6-119},
doi = {10.1186/1752-0509-6-119},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/ChemmangattuvalappilTB12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/ChenH12,
author = {Bor{-}Sen Chen and
Chih{-}Yuan Hsu},
title = {Robust synchronization control scheme of a population of nonlinear
stochastic synthetic genetic oscillators under intrinsic and extrinsic
molecular noise via quorum sensing},
journal = {{BMC} Syst. Biol.},
volume = {6},
pages = {136},
year = {2012},
url = {https://doi.org/10.1186/1752-0509-6-136},
doi = {10.1186/1752-0509-6-136},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/ChenH12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/ChenJQC12,
author = {Xi Chen and
Hao Jiang and
Yushan Qiu and
Wai{-}Ki Ching},
title = {On optimal control policy for probabilistic Boolean network: a state
reduction approach},
journal = {{BMC} Syst. Biol.},
volume = {6},
number = {{S-1}},
pages = {S8},
year = {2012},
url = {https://doi.org/10.1186/1752-0509-6-S1-S8},
doi = {10.1186/1752-0509-6-S1-S8},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/ChenJQC12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/ChenPRSMSS12,
author = {Zhengzhang Chen and
Kanchana Padmanabhan and
Andrea M. Rocha and
Yekaterina Shpanskaya and
James R. Mihelcic and
Kathleen Scott and
Nagiza F. Samatova},
title = {Spice: discovery of phenotype-determining component interplays},
journal = {{BMC} Syst. Biol.},
volume = {6},
pages = {40},
year = {2012},
url = {https://doi.org/10.1186/1752-0509-6-40},
doi = {10.1186/1752-0509-6-40},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcsb/ChenPRSMSS12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/ChenWSZ12,
author = {Xin Chen and
Qiong Wu and
Ruimin Sun and
Louxin Zhang},
title = {Two combinatorial optimization problems for {SNP} discovery using
base-specific cleavage and mass spectrometry},
journal = {{BMC} Syst. Biol.},
volume = {6},
number = {{S-2}},
pages = {S5},
year = {2012},
url = {https://doi.org/10.1186/1752-0509-6-S2-S5},
doi = {10.1186/1752-0509-6-S2-S5},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/ChenWSZ12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/ChenYYAS12,
author = {Liang{-}Chun Chen and
Hsiang{-}Yuan Yeh and
Cheng{-}Yu Yeh and
Carlos Arias and
Von{-}Wun Soo},
title = {Identifying co-targets to fight drug resistance based on a random
walk model},
journal = {{BMC} Syst. Biol.},
volume = {6},
pages = {5},
year = {2012},
url = {https://doi.org/10.1186/1752-0509-6-5},
doi = {10.1186/1752-0509-6-5},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/ChenYYAS12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/ChenZHWZ12,
author = {Chen Chen and
Junfei Zhao and
Qiang Huang and
Rui{-}Sheng Wang and
Xiang{-}Sun Zhang},
title = {Inferring domain-domain interactions from protein-protein interactions
in the complex network conformation},
journal = {{BMC} Syst. Biol.},
volume = {6},
number = {{S-1}},
pages = {S7},
year = {2012},
url = {https://doi.org/10.1186/1752-0509-6-S1-S7},
doi = {10.1186/1752-0509-6-S1-S7},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/ChenZHWZ12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/ChickarmaneOP12,
author = {Vijay Chickarmane and
Victor Olariu and
Carsten Peterson},
title = {Probing the role of stochasticity in a model of the embryonic stem
cell - heterogeneous gene expression and reprogramming efficiency},
journal = {{BMC} Syst. Biol.},
volume = {6},
pages = {98},
year = {2012},
url = {https://doi.org/10.1186/1752-0509-6-98},
doi = {10.1186/1752-0509-6-98},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/ChickarmaneOP12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/ChouV12,
author = {I{-}Chun Chou and
Eberhard O. Voit},
title = {Estimation of dynamic flux profiles from metabolic time series data},
journal = {{BMC} Syst. Biol.},
volume = {6},
pages = {84},
year = {2012},
url = {https://doi.org/10.1186/1752-0509-6-84},
doi = {10.1186/1752-0509-6-84},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/ChouV12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/ChungL12,
author = {Bevan Chung and
Dong{-}Yup Lee},
title = {Computational codon optimization of synthetic gene for protein expression},
journal = {{BMC} Syst. Biol.},
volume = {6},
pages = {134},
year = {2012},
url = {https://doi.org/10.1186/1752-0509-6-134},
doi = {10.1186/1752-0509-6-134},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/ChungL12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/ClarkDTKM12,
author = {Neil R. Clark and
Ruth Dannenfelser and
Christopher M. Tan and
Michael E. Komosinski and
Avi Ma'ayan},
title = {Sets2Networks: network inference from repeated observations of sets},
journal = {{BMC} Syst. Biol.},
volume = {6},
pages = {89},
year = {2012},
url = {https://doi.org/10.1186/1752-0509-6-89},
doi = {10.1186/1752-0509-6-89},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/ClarkDTKM12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/CoskunQCCCYJDLOO12,
author = {Sarp A. Coskun and
Xinjian Qi and
Ali Cakmak and
En Cheng and
A. Erc{\"{u}}ment {\c{C}}i{\c{c}}ek and
Lei Yang and
Rishiraj Jadeja and
Ranjan K. Dash and
Nicola Lai and
Gultekin {\"{O}}zsoyoglu and
Z. Meral {\"{O}}zsoyoglu},
title = {PathCase-SB: integrating data sources and providing tools for systems
biology research},
journal = {{BMC} Syst. Biol.},
volume = {6},
pages = {67},
year = {2012},
url = {https://doi.org/10.1186/1752-0509-6-67},
doi = {10.1186/1752-0509-6-67},
timestamp = {Thu, 23 Jun 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/CoskunQCCCYJDLOO12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/CreamerSACTBHBHHP12,
author = {Matthew S. Creamer and
Edward C. Stites and
Meraj Aziz and
James A. Cahill and
Chin Wee Tan and
Michael E. Berens and
Haiyong Han and
Kimberly J. Bussey and
Daniel D. Von Hoff and
William S. Hlavacek and
Richard G. Posner},
title = {Specification, annotation, visualization and simulation of a large
rule-based model for {ERBB} receptor signaling},
journal = {{BMC} Syst. Biol.},
volume = {6},
pages = {107},
year = {2012},
url = {https://doi.org/10.1186/1752-0509-6-107},
doi = {10.1186/1752-0509-6-107},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/CreamerSACTBHBHHP12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/CrespoRJKS12,
author = {Isaac Crespo and
Kirsten Roomp and
Wiktor Jurkowski and
Hiroaki Kitano and
Antonio del Sol},
title = {Gene regulatory network analysis supports inflammation as a key neurodegeneration
process in prion disease},
journal = {{BMC} Syst. Biol.},
volume = {6},
pages = {132},
year = {2012},
url = {https://doi.org/10.1186/1752-0509-6-132},
doi = {10.1186/1752-0509-6-132},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/CrespoRJKS12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/CroftSJG12,
author = {Larry Croft and
Damian Szklarczyk and
Lars Juhl Jensen and
Jan Gorodkin},
title = {Multiple independent analyses reveal only transcription factors as
an enriched functional class associated with microRNAs},
journal = {{BMC} Syst. Biol.},
volume = {6},
pages = {90},
year = {2012},
url = {https://doi.org/10.1186/1752-0509-6-90},
doi = {10.1186/1752-0509-6-90},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/CroftSJG12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/CrownAA12,
author = {Scott B. Crown and
Woo Ahn and
Maciek R. Antoniewicz},
title = {Rational design of \({}^{\mbox{13}}\)C-labeling experiments for metabolic
flux analysis in mammalian cells},
journal = {{BMC} Syst. Biol.},
volume = {6},
pages = {43},
year = {2012},
url = {https://doi.org/10.1186/1752-0509-6-43},
doi = {10.1186/1752-0509-6-43},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/CrownAA12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/CruzHDWPHDG12,
author = {Ana Luisa B. Cruz and
Marit Hebly and
Giang{-}Huong Duong and
Sebastian A. Wahl and
Jack T. Pronk and
Joseph J. Heijnen and
Pascale A. S. Daran{-}Lapujade and
Walter M. van Gulik},
title = {Similar temperature dependencies of glycolytic enzymes: an evolutionary
adaptation to temperature dynamics?},
journal = {{BMC} Syst. Biol.},
volume = {6},
pages = {151},
year = {2012},
url = {https://doi.org/10.1186/1752-0509-6-151},
doi = {10.1186/1752-0509-6-151},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/CruzHDWPHDG12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/DAuriaDGKWCSLPH12,
author = {Kevin M. D'Auria and
Gina M. Donato and
Mary C. Gray and
Glynis L. Kolling and
Cirle A. Warren and
Lauren M. Cave and
Michael D. Solga and
Joanne A. Lannigan and
Jason A. Papin and
Erik L. Hewlett},
title = {Systems analysis of the transcriptional response of human ileocecal
epithelial cells to Clostridium difficile toxins and effects on cell
cycle control},
journal = {{BMC} Syst. Biol.},
volume = {6},
pages = {2},
year = {2012},
url = {https://doi.org/10.1186/1752-0509-6-2},
doi = {10.1186/1752-0509-6-2},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcsb/DAuriaDGKWCSLPH12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/DaiLLZ12,
author = {Chao Dai and
Wenyuan Li and
Juan Liu and
Xianghong Jasmine Zhou},
title = {Integrating many co-splicing networks to reconstruct splicing regulatory
modules},
journal = {{BMC} Syst. Biol.},
volume = {6},
number = {{S-1}},
pages = {S17},
year = {2012},
url = {https://doi.org/10.1186/1752-0509-6-S1-S17},
doi = {10.1186/1752-0509-6-S1-S17},
timestamp = {Fri, 19 Aug 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/DaiLLZ12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/DasY12,
author = {Jishnu Das and
Haiyuan Yu},
title = {{HINT:} High-quality protein interactomes and their applications in
understanding human disease},
journal = {{BMC} Syst. Biol.},
volume = {6},
pages = {92},
year = {2012},
url = {https://doi.org/10.1186/1752-0509-6-92},
doi = {10.1186/1752-0509-6-92},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/DasY12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/DongC12,
author = {Chao{-}Yi Dong and
Kwang{-}Hyun Cho},
title = {An optimally evolved connective ratio of neural networks that maximizes
the occurrence of synchronized bursting behavior},
journal = {{BMC} Syst. Biol.},
volume = {6},
pages = {23},
year = {2012},
url = {https://doi.org/10.1186/1752-0509-6-23},
doi = {10.1186/1752-0509-6-23},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/DongC12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/DrawertEH12,
author = {Brian Drawert and
Stefan Engblom and
Andreas Hellander},
title = {{URDME:} a modular framework for stochastic simulation of reaction-transport
processes in complex geometries},
journal = {{BMC} Syst. Biol.},
volume = {6},
pages = {76},
year = {2012},
url = {https://doi.org/10.1186/1752-0509-6-76},
doi = {10.1186/1752-0509-6-76},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/DrawertEH12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/EssackMSB12,
author = {Magbubah Essack and
Cameron MacPherson and
Sebastian Schmeier and
Vladimir B. Bajic},
title = {Identification of estrogen responsive genes using esophageal squamous
cell carcinoma {(ESCC)} as a model},
journal = {{BMC} Syst. Biol.},
volume = {6},
pages = {135},
year = {2012},
url = {https://doi.org/10.1186/1752-0509-6-135},
doi = {10.1186/1752-0509-6-135},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcsb/EssackMSB12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/FacchettiZA12,
author = {Giuseppe Facchetti and
Mattia Zampieri and
Claudio Altafini},
title = {Predicting and characterizing selective multiple drug treatments for
metabolic diseases and cancer},
journal = {{BMC} Syst. Biol.},
volume = {6},
pages = {115},
year = {2012},
url = {https://doi.org/10.1186/1752-0509-6-115},
doi = {10.1186/1752-0509-6-115},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcsb/FacchettiZA12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/FanGPLTPL12,
author = {ShengJun Fan and
Qiang Geng and
Zhen{-}Yu Pan and
Xin Li and
Lu Tie and
Yan Pan and
Xuejun Li},
title = {Clarifying off-target effects for torcetrapib using network pharmacology
and reverse docking approach},
journal = {{BMC} Syst. Biol.},
volume = {6},
pages = {152},
year = {2012},
url = {https://doi.org/10.1186/1752-0509-6-152},
doi = {10.1186/1752-0509-6-152},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/FanGPLTPL12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/FengXCT12,
author = {Xueyang Feng and
You Xu and
Yixin Chen and
Yinjie J. Tang},
title = {MicrobesFlux: a web platform for drafting metabolic models from the
{KEGG} database},
journal = {{BMC} Syst. Biol.},
volume = {6},
pages = {94},
year = {2012},
url = {https://doi.org/10.1186/1752-0509-6-94},
doi = {10.1186/1752-0509-6-94},
timestamp = {Thu, 12 Jan 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcsb/FengXCT12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/FloresLYSRLVLM12,
author = {Ricardo J. Flores and
Yiting Li and
Alexander Yu and
Jianhe Shen and
Pulivarthi H. Rao and
Serrine S. Lau and
Marina Vannucci and
Ching C. Lau and
Tsz{-}Kwong Man},
title = {A systems biology approach reveals common metastatic pathways in osteosarcoma},
journal = {{BMC} Syst. Biol.},
volume = {6},
pages = {50},
year = {2012},
url = {https://doi.org/10.1186/1752-0509-6-50},
doi = {10.1186/1752-0509-6-50},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/FloresLYSRLVLM12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/FuJZX12,
author = {Yan Fu and
Xiaoshan Jiang and
Hang Zhang and
Jianhua Xing},
title = {A strategy to study pathway cross-talks of cells under repetitive
exposure to stimuli},
journal = {{BMC} Syst. Biol.},
volume = {6},
number = {{S-3}},
pages = {S6},
year = {2012},
url = {https://doi.org/10.1186/1752-0509-6-S3-S6},
doi = {10.1186/1752-0509-6-S3-S6},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/FuJZX12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/FuTDWCLZGC12,
author = {Jihong Fu and
Wentao Tang and
Peng Du and
Guanghui Wang and
Wei Chen and
Jingming Li and
Yunxiang Zhu and
Jun Gao and
Long Cui},
title = {Identifying MicroRNA-mRNA regulatory network in colorectal cancer
by a combination of expression profile and bioinformatics analysis},
journal = {{BMC} Syst. Biol.},
volume = {6},
pages = {68},
year = {2012},
url = {https://doi.org/10.1186/1752-0509-6-68},
doi = {10.1186/1752-0509-6-68},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/FuTDWCLZGC12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/FujitaSKSPM12,
author = {Andr{\'{e}} Fujita and
Patricia Severino and
Kaname Kojima and
Jo{\~{a}}o Ricardo Sato and
Alexandre Galv{\~{a}}o Patriota and
Satoru Miyano},
title = {Functional clustering of time series gene expression data by Granger
causality},
journal = {{BMC} Syst. Biol.},
volume = {6},
pages = {137},
year = {2012},
url = {https://doi.org/10.1186/1752-0509-6-137},
doi = {10.1186/1752-0509-6-137},
timestamp = {Mon, 03 Jan 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcsb/FujitaSKSPM12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/GaoCLWCZD12,
author = {Xianfu Gao and
Wanjia Chen and
Rongxia Li and
Minfeng Wang and
Chunlei Chen and
Rong Zeng and
Yueyi Deng},
title = {Systematic variations associated with renal disease uncovered by parallel
metabolomics of urine and serum},
journal = {{BMC} Syst. Biol.},
volume = {6},
number = {{S-1}},
pages = {S14},
year = {2012},
url = {https://doi.org/10.1186/1752-0509-6-S1-S14},
doi = {10.1186/1752-0509-6-S1-S14},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/GaoCLWCZD12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/GidvaniSLDMDI12,
author = {Rohan D. Gidvani and
Peter Sudmant and
Grace Li and
Lance F. DaSilva and
Brendan J. McConkey and
Bernard P. Duncker and
Brian P. Ingalls},
title = {A quantitative model of the initiation of {DNA} replication in Saccharomyces
cerevisiae predicts the effects of system perturbations},
journal = {{BMC} Syst. Biol.},
volume = {6},
pages = {78},
year = {2012},
url = {https://doi.org/10.1186/1752-0509-6-78},
doi = {10.1186/1752-0509-6-78},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/GidvaniSLDMDI12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/GonnetDWS12,
author = {Pedro Gonnet and
Sotiris Dimopoulos and
Lukas Widmer and
J{\"{o}}rg Stelling},
title = {A specialized {ODE} integrator for the efficient computation of parameter
sensitivities},
journal = {{BMC} Syst. Biol.},
volume = {6},
pages = {46},
year = {2012},
url = {https://doi.org/10.1186/1752-0509-6-46},
doi = {10.1186/1752-0509-6-46},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/GonnetDWS12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/GrieneisenSHM12,
author = {Ver{\^{o}}nica A. Grieneisen and
Ben Scheres and
Paulien Hogeweg and
Athanasius F. M. Mar{\'{e}}e},
title = {Morphogengineering roots: comparing mechanisms of morphogen gradient
formation},
journal = {{BMC} Syst. Biol.},
volume = {6},
pages = {37},
year = {2012},
url = {https://doi.org/10.1186/1752-0509-6-37},
doi = {10.1186/1752-0509-6-37},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/GrieneisenSHM12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/GuLCZW12,
author = {Zuguang Gu and
Jialin Liu and
Kunming Cao and
Junfeng Zhang and
Jin Wang},
title = {Centrality-based pathway enrichment: a systematic approach for finding
significant pathways dominated by key genes},
journal = {{BMC} Syst. Biol.},
volume = {6},
pages = {56},
year = {2012},
url = {https://doi.org/10.1186/1752-0509-6-56},
doi = {10.1186/1752-0509-6-56},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/GuLCZW12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/GuZW12,
author = {Zuguang Gu and
Chenyu Zhang and
Jin Wang},
title = {Gene regulation is governed by a core network in hepatocellular carcinoma},
journal = {{BMC} Syst. Biol.},
volume = {6},
pages = {32},
year = {2012},
url = {https://doi.org/10.1186/1752-0509-6-32},
doi = {10.1186/1752-0509-6-32},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/GuZW12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/HaleLC12,
author = {Paul J. Hale and
Alfredo M. L{\'{o}}pez{-}Yunez and
Jake Y. Chen},
title = {Genome-wide meta-analysis of genetic susceptible genes for Type 2
Diabetes},
journal = {{BMC} Syst. Biol.},
volume = {6},
number = {{S-3}},
pages = {S16},
year = {2012},
url = {https://doi.org/10.1186/1752-0509-6-S3-S16},
doi = {10.1186/1752-0509-6-S3-S16},
timestamp = {Wed, 19 May 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/HaleLC12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/HanCTX12,
author = {Bing Han and
Xue{-}wen Chen and
Zohreh Talebizadeh and
Hua Xu},
title = {Genetic studies of complex human diseases: Characterizing SNP-disease
associations using Bayesian networks},
journal = {{BMC} Syst. Biol.},
volume = {6},
number = {{S-3}},
pages = {S14},
year = {2012},
url = {https://doi.org/10.1186/1752-0509-6-S3-S14},
doi = {10.1186/1752-0509-6-S3-S14},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/HanCTX12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/HaoRL12,
author = {Dapeng Hao and
Cong Ren and
Chuanxing Li},
title = {Revisiting the variation of clustering coefficient of biological networks
suggests new modular structure},
journal = {{BMC} Syst. Biol.},
volume = {6},
pages = {34},
year = {2012},
url = {https://doi.org/10.1186/1752-0509-6-34},
doi = {10.1186/1752-0509-6-34},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/HaoRL12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/HaubrockLW12,
author = {Martin Haubrock and
Jie Li and
Edgar Wingender},
title = {Using potential master regulator sites and paralogous expansion to
construct tissue-specific transcriptional networks},
journal = {{BMC} Syst. Biol.},
volume = {6},
number = {{S-2}},
pages = {S15},
year = {2012},
url = {https://doi.org/10.1186/1752-0509-6-S2-S15},
doi = {10.1186/1752-0509-6-S2-S15},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/HaubrockLW12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/HauryMVV12,
author = {Anne{-}Claire Haury and
Fantine Mordelet and
Paola Vera{-}Licona and
Jean{-}Philippe Vert},
title = {{TIGRESS:} Trustful Inference of Gene REgulation using Stability Selection},
journal = {{BMC} Syst. Biol.},
volume = {6},
pages = {145},
year = {2012},
url = {https://doi.org/10.1186/1752-0509-6-145},
doi = {10.1186/1752-0509-6-145},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/HauryMVV12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/HeavnerSBMW12,
author = {Benjamin D. Heavner and
Kieran Smallbone and
Brandon Barker and
Pedro Mendes and
Larry P. Walker},
title = {Yeast 5 - an expanded reconstruction of the Saccharomyces cerevisiae
metabolic network},
journal = {{BMC} Syst. Biol.},
volume = {6},
pages = {55},
year = {2012},
url = {https://doi.org/10.1186/1752-0509-6-55},
doi = {10.1186/1752-0509-6-55},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/HeavnerSBMW12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/HelikarKMBRMWSLR12,
author = {Tom{\'{a}}s Helikar and
Bryan M. Kowal and
Sean McClenathan and
Mitchell Bruckner and
Thaine W. Rowley and
Alex Madrahimov and
Benjamin Wicks and
Manish Shrestha and
Kahani Limbu and
Jim A. Rogers},
title = {The Cell Collective: Toward an open and collaborative approach to
systems biology},
journal = {{BMC} Syst. Biol.},
volume = {6},
pages = {96},
year = {2012},
url = {https://doi.org/10.1186/1752-0509-6-96},
doi = {10.1186/1752-0509-6-96},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/HelikarKMBRMWSLR12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/HepburnCWS12,
author = {Iain Hepburn and
Weiliang Chen and
Stefan Wils and
Erik De Schutter},
title = {{STEPS:} efficient simulation of stochastic reaction-diffusion models
in realistic morphologies},
journal = {{BMC} Syst. Biol.},
volume = {6},
pages = {36},
year = {2012},
url = {https://doi.org/10.1186/1752-0509-6-36},
doi = {10.1186/1752-0509-6-36},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/HepburnCWS12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/HoekM12,
author = {Milan van Hoek and
Roeland Merks},
title = {Redox balance is key to explaining full vs. partial switching to low-yield
metabolism},
journal = {{BMC} Syst. Biol.},
volume = {6},
pages = {22},
year = {2012},
url = {https://doi.org/10.1186/1752-0509-6-22},
doi = {10.1186/1752-0509-6-22},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/HoekM12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/HongKKKSCS12,
author = {Ji{-}Young Hong and
Geun{-}Hong Kim and
Jun{-}Woo Kim and
Soon{-}Sung Kwon and
Eisuke F. Sato and
Kwang{-}Hyun Cho and
Eun Bo Shim},
title = {Computational modeling of apoptotic signaling pathways induced by
cisplatin},
journal = {{BMC} Syst. Biol.},
volume = {6},
pages = {122},
year = {2012},
url = {https://doi.org/10.1186/1752-0509-6-122},
doi = {10.1186/1752-0509-6-122},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/HongKKKSCS12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/HongLKKCS12,
author = {Changki Hong and
Minho Lee and
Dongsup Kim and
Dong San Kim and
Kwang{-}Hyun Cho and
Insik Shin},
title = {A checkpoints capturing timing-robust Boolean model of the budding
yeast cell cycle regulatory network},
journal = {{BMC} Syst. Biol.},
volume = {6},
pages = {129},
year = {2012},
url = {https://doi.org/10.1186/1752-0509-6-129},
doi = {10.1186/1752-0509-6-129},
timestamp = {Thu, 05 Aug 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/HongLKKCS12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/HongX0T12,
author = {Tian Hong and
Jianhua Xing and
Liwu Li and
John J. Tyson},
title = {A simple theoretical framework for understanding heterogeneous differentiation
of CD4\({}^{\mbox{+}}\) {T} cells},
journal = {{BMC} Syst. Biol.},
volume = {6},
pages = {66},
year = {2012},
url = {https://doi.org/10.1186/1752-0509-6-66},
doi = {10.1186/1752-0509-6-66},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/HongX0T12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/HuangCCCC12,
author = {Yu{-}Feng Huang and
Sheng{-}Chung Chen and
Yih{-}Shien Chiang and
Tzu{-}Han Chen and
Kuo{-}Ping Chiu},
title = {Palindromic sequence impedes sequencing-by-ligation mechanism},
journal = {{BMC} Syst. Biol.},
volume = {6},
number = {{S-2}},
pages = {S10},
year = {2012},
url = {https://doi.org/10.1186/1752-0509-6-S2-S10},
doi = {10.1186/1752-0509-6-S2-S10},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/HuangCCCC12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/HuangZXSZ12,
author = {Yufei Huang and
Zhongming Zhao and
Hua Xu and
Yu Shyr and
Bing Zhang},
title = {Advances in systems biology: computational algorithms and applications},
journal = {{BMC} Syst. Biol.},
volume = {6},
number = {{S-3}},
pages = {S1},
year = {2012},
url = {https://doi.org/10.1186/1752-0509-6-S3-S1},
doi = {10.1186/1752-0509-6-S3-S1},
timestamp = {Sun, 12 Nov 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcsb/HuangZXSZ12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/IngkasuwanNPTBMCTC12,
author = {Papapit Ingkasuwan and
Supatcharee Netrphan and
Sukon Prasitwattanaseree and
Morakot Tanticharoen and
Sakarindr Bhumiratana and
Asawin Meechai and
Jeerayut Chaijaruwanich and
Hideki Takahashi and
Supapon Cheevadhanarak},
title = {Inferring transcriptional gene regulation network of starch metabolism
in Arabidopsis thaliana leaves using graphical Gaussian model},
journal = {{BMC} Syst. Biol.},
volume = {6},
pages = {100},
year = {2012},
url = {https://doi.org/10.1186/1752-0509-6-100},
doi = {10.1186/1752-0509-6-100},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcsb/IngkasuwanNPTBMCTC12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/JayapandianZEZS12,
author = {Catherine P. Jayapandian and
Meng Zhao and
Rob M. Ewing and
Guo{-}Qiang Zhang and
Satya Sanket Sahoo},
title = {A semantic proteomics dashboard (SemPoD) for data management in translational
research},
journal = {{BMC} Syst. Biol.},
volume = {6},
number = {{S-3}},
pages = {S20},
year = {2012},
url = {https://doi.org/10.1186/1752-0509-6-S3-S20},
doi = {10.1186/1752-0509-6-S3-S20},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/JayapandianZEZS12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/JiaLZ12,
author = {Peilin Jia and
Yang Liu and
Zhongming Zhao},
title = {Integrative pathway analysis of genome-wide association studies and
gene expression data in prostate cancer},
journal = {{BMC} Syst. Biol.},
volume = {6},
number = {{S-3}},
pages = {S13},
year = {2012},
url = {https://doi.org/10.1186/1752-0509-6-S3-S13},
doi = {10.1186/1752-0509-6-S3-S13},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/JiaLZ12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/JiaSG12,
author = {Gengjie Jia and
Gregory Stephanopoulos and
Rudiyanto Gunawan},
title = {Incremental parameter estimation of kinetic metabolic network models},
journal = {{BMC} Syst. Biol.},
volume = {6},
pages = {142},
year = {2012},
url = {https://doi.org/10.1186/1752-0509-6-142},
doi = {10.1186/1752-0509-6-142},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/JiaSG12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/JiaoA12,
author = {Shuyun Jiao and
Ping Ao},
title = {Absorbing phenomena and escaping time for Muller's ratchet in adaptive
landscape},
journal = {{BMC} Syst. Biol.},
volume = {6},
number = {{S-1}},
pages = {S10},
year = {2012},
url = {https://doi.org/10.1186/1752-0509-6-S1-S10},
doi = {10.1186/1752-0509-6-S1-S10},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/JiaoA12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
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