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@book{DBLP:series/cb/Ramsden23, author = {Jeremy Ramsden}, title = {Bioinformatics - An Introduction, 4th Edition}, series = {Computational Biology}, publisher = {Springer}, year = {2023}, url = {https://doi.org/10.1007/978-3-030-45607-8}, doi = {10.1007/978-3-030-45607-8}, isbn = {978-3-030-45606-1}, timestamp = {Tue, 10 Oct 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/series/cb/Ramsden23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@book{DBLP:series/cb/Hauswedell22, author = {Hannes Hauswedell}, title = {Sequence Analysis and Modern {C++} - The Creation of the SeqAn3 Bioinformatics Library, 2}, series = {Computational Biology}, publisher = {Springer}, year = {2022}, url = {https://doi.org/10.1007/978-3-030-90990-1}, doi = {10.1007/978-3-030-90990-1}, isbn = {978-3-030-90989-5}, timestamp = {Tue, 15 Mar 2022 00:00:00 +0100}, biburl = {https://dblp.org/rec/series/cb/Hauswedell22.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@book{DBLP:series/cb/SaeedHK22, author = {Fahad Saeed and Muhammad Haseeb and Sumesh Kumar}, title = {High-Performance Algorithms for Mass Spectrometry-Based Omics}, series = {Computational Biology}, volume = {34}, publisher = {Springer}, year = {2022}, url = {https://doi.org/10.1007/978-3-031-01960-9}, doi = {10.1007/978-3-031-01960-9}, isbn = {978-3-031-01959-3}, timestamp = {Sat, 17 Sep 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/series/cb/SaeedHK22.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@incollection{DBLP:series/cb/0013GT19, author = {Bing Liu and Benjamin M. Gyori and P. S. Thiagarajan}, editor = {Pietro Li{\`{o}} and Paolo Zuliani}, title = {Statistical Model Checking-Based Analysis of Biological Networks}, booktitle = {Automated Reasoning for Systems Biology and Medicine}, series = {Computational Biology}, volume = {30}, pages = {63--92}, publisher = {Springer}, year = {2019}, url = {https://doi.org/10.1007/978-3-030-17297-8\_3}, doi = {10.1007/978-3-030-17297-8\_3}, timestamp = {Mon, 15 Jun 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/series/cb/0013GT19.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@incollection{DBLP:series/cb/BenesBPS19, author = {Nikola Benes and Lubos Brim and Samuel Pastva and David Safr{\'{a}}nek}, editor = {Pietro Li{\`{o}} and Paolo Zuliani}, title = {Model Checking Approach to the Analysis of Biological Systems}, booktitle = {Automated Reasoning for Systems Biology and Medicine}, series = {Computational Biology}, volume = {30}, pages = {3--35}, publisher = {Springer}, year = {2019}, url = {https://doi.org/10.1007/978-3-030-17297-8\_1}, doi = {10.1007/978-3-030-17297-8\_1}, timestamp = {Thu, 13 Jun 2019 01:00:00 +0200}, biburl = {https://dblp.org/rec/series/cb/BenesBPS19.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@incollection{DBLP:series/cb/BernardeschiDM19, author = {Cinzia Bernardeschi and Andrea Domenici and Paolo Masci}, editor = {Pietro Li{\`{o}} and Paolo Zuliani}, title = {Logic-Based Formalization of System Requirements for Integrated Clinical Environments}, booktitle = {Automated Reasoning for Systems Biology and Medicine}, series = {Computational Biology}, volume = {30}, pages = {215--242}, publisher = {Springer}, year = {2019}, url = {https://doi.org/10.1007/978-3-030-17297-8\_8}, doi = {10.1007/978-3-030-17297-8\_8}, timestamp = {Tue, 01 Jun 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/series/cb/BernardeschiDM19.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@incollection{DBLP:series/cb/BosnackiRV19, author = {Dragan Bosnacki and Natal A. W. van Riel and Mitko Veta}, editor = {Pietro Li{\`{o}} and Paolo Zuliani}, title = {Deep Learning with Convolutional Neural Networks for Histopathology Image Analysis}, booktitle = {Automated Reasoning for Systems Biology and Medicine}, series = {Computational Biology}, volume = {30}, pages = {453--469}, publisher = {Springer}, year = {2019}, url = {https://doi.org/10.1007/978-3-030-17297-8\_17}, doi = {10.1007/978-3-030-17297-8\_17}, timestamp = {Mon, 03 Jan 2022 00:00:00 +0100}, biburl = {https://dblp.org/rec/series/cb/BosnackiRV19.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@incollection{DBLP:series/cb/BowlesC19, author = {Juliana K{\"{u}}ster Filipe Bowles and Marco B. Caminati}, editor = {Pietro Li{\`{o}} and Paolo Zuliani}, title = {Balancing Prescriptions with Constraint Solvers}, booktitle = {Automated Reasoning for Systems Biology and Medicine}, series = {Computational Biology}, volume = {30}, pages = {243--267}, publisher = {Springer}, year = {2019}, url = {https://doi.org/10.1007/978-3-030-17297-8\_9}, doi = {10.1007/978-3-030-17297-8\_9}, timestamp = {Fri, 27 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/series/cb/BowlesC19.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@incollection{DBLP:series/cb/ClarkeWPHF19, author = {Matthew A. Clarke and Steven Woodhouse and Nir Piterman and Benjamin A. Hall and Jasmin Fisher}, editor = {Pietro Li{\`{o}} and Paolo Zuliani}, title = {Using State Space Exploration to Determine How Gene Regulatory Networks Constrain Mutation Order in Cancer Evolution}, booktitle = {Automated Reasoning for Systems Biology and Medicine}, series = {Computational Biology}, volume = {30}, pages = {133--153}, publisher = {Springer}, year = {2019}, url = {https://doi.org/10.1007/978-3-030-17297-8\_5}, doi = {10.1007/978-3-030-17297-8\_5}, timestamp = {Sun, 12 Nov 2023 00:00:00 +0100}, biburl = {https://dblp.org/rec/series/cb/ClarkeWPHF19.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@incollection{DBLP:series/cb/DangDFMPR19, author = {Thao Dang and Tommaso Dreossi and Eric Fanchon and Oded Maler and Carla Piazza and Alexandre Rocca}, editor = {Pietro Li{\`{o}} and Paolo Zuliani}, title = {Set-Based Analysis for Biological Modeling}, booktitle = {Automated Reasoning for Systems Biology and Medicine}, series = {Computational Biology}, volume = {30}, pages = {157--189}, publisher = {Springer}, year = {2019}, url = {https://doi.org/10.1007/978-3-030-17297-8\_6}, doi = {10.1007/978-3-030-17297-8\_6}, timestamp = {Tue, 21 Mar 2023 00:00:00 +0100}, biburl = {https://dblp.org/rec/series/cb/DangDFMPR19.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@incollection{DBLP:series/cb/DunnY19, author = {Sara{-}Jane Dunn and Boyan Yordanov}, editor = {Pietro Li{\`{o}} and Paolo Zuliani}, title = {Automated Reasoning for the Synthesis and Analysis of Biological Programs}, booktitle = {Automated Reasoning for Systems Biology and Medicine}, series = {Computational Biology}, volume = {30}, pages = {37--62}, publisher = {Springer}, year = {2019}, url = {https://doi.org/10.1007/978-3-030-17297-8\_2}, doi = {10.1007/978-3-030-17297-8\_2}, timestamp = {Thu, 13 Jun 2019 01:00:00 +0200}, biburl = {https://dblp.org/rec/series/cb/DunnY19.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@incollection{DBLP:series/cb/IsmailHH19, author = {Amr Ismail and Mostafa Herajy and Monika Heiner}, editor = {Pietro Li{\`{o}} and Paolo Zuliani}, title = {A Graphical Approach for Hybrid Modelling of Intracellular Calcium Dynamics Based on Coloured Hybrid Petri Nets}, booktitle = {Automated Reasoning for Systems Biology and Medicine}, series = {Computational Biology}, volume = {30}, pages = {349--367}, publisher = {Springer}, year = {2019}, url = {https://doi.org/10.1007/978-3-030-17297-8\_13}, doi = {10.1007/978-3-030-17297-8\_13}, timestamp = {Tue, 29 Dec 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/series/cb/IsmailHH19.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@incollection{DBLP:series/cb/KushnerBCFMS19, author = {Taisa Kushner and B. Wayne Bequette and Faye Cameron and Gregory P. Forlenza and David M. Maahs and Sriram Sankaranarayanan}, editor = {Pietro Li{\`{o}} and Paolo Zuliani}, title = {Models, Devices, Properties, and Verification of Artificial Pancreas Systems}, booktitle = {Automated Reasoning for Systems Biology and Medicine}, series = {Computational Biology}, volume = {30}, pages = {93--131}, publisher = {Springer}, year = {2019}, url = {https://doi.org/10.1007/978-3-030-17297-8\_4}, doi = {10.1007/978-3-030-17297-8\_4}, timestamp = {Mon, 26 Jun 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/series/cb/KushnerBCFMS19.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@incollection{DBLP:series/cb/Neupane0M0M19, author = {Thakur Neupane and Zhen Zhang and Curtis Madsen and Hao Zheng and Chris J. Myers}, editor = {Pietro Li{\`{o}} and Paolo Zuliani}, title = {Approximation Techniques for Stochastic Analysis of Biological Systems}, booktitle = {Automated Reasoning for Systems Biology and Medicine}, series = {Computational Biology}, volume = {30}, pages = {327--348}, publisher = {Springer}, year = {2019}, url = {https://doi.org/10.1007/978-3-030-17297-8\_12}, doi = {10.1007/978-3-030-17297-8\_12}, timestamp = {Thu, 13 Jun 2019 01:00:00 +0200}, biburl = {https://dblp.org/rec/series/cb/Neupane0M0M19.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@incollection{DBLP:series/cb/PachecoBS19, author = {Maria Pires Pacheco and Tamara Bintener and Thomas Sauter}, editor = {Pietro Li{\`{o}} and Paolo Zuliani}, title = {Towards the Integration of Metabolic Network Modelling and Machine Learning for the Routine Analysis of High-Throughput Patient Data}, booktitle = {Automated Reasoning for Systems Biology and Medicine}, series = {Computational Biology}, volume = {30}, pages = {401--424}, publisher = {Springer}, year = {2019}, url = {https://doi.org/10.1007/978-3-030-17297-8\_15}, doi = {10.1007/978-3-030-17297-8\_15}, timestamp = {Thu, 13 Jun 2019 01:00:00 +0200}, biburl = {https://dblp.org/rec/series/cb/PachecoBS19.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@incollection{DBLP:series/cb/RazzaqCJMGB19, author = {Misbah Razzaq and Lokmane Chebouba and Pierre Le Jeune and Hanen Mhamdi and Carito Guziolowski and J{\'{e}}r{\'{e}}mie Bourdon}, editor = {Pietro Li{\`{o}} and Paolo Zuliani}, title = {Logic and Linear Programs to Understand Cancer Response}, booktitle = {Automated Reasoning for Systems Biology and Medicine}, series = {Computational Biology}, volume = {30}, pages = {191--213}, publisher = {Springer}, year = {2019}, url = {https://doi.org/10.1007/978-3-030-17297-8\_7}, doi = {10.1007/978-3-030-17297-8\_7}, timestamp = {Sat, 30 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/series/cb/RazzaqCJMGB19.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@incollection{DBLP:series/cb/SamalKEL0R19, author = {Satya Swarup Samal and Jeyashree Krishnan and Ali Hadizadeh Esfahani and Christoph L{\"{u}}ders and Andreas Weber and Ovidiu Radulescu}, editor = {Pietro Li{\`{o}} and Paolo Zuliani}, title = {Metastable Regimes and Tipping Points of Biochemical Networks with Potential Applications in Precision Medicine}, booktitle = {Automated Reasoning for Systems Biology and Medicine}, series = {Computational Biology}, volume = {30}, pages = {269--295}, publisher = {Springer}, year = {2019}, url = {https://doi.org/10.1007/978-3-030-17297-8\_10}, doi = {10.1007/978-3-030-17297-8\_10}, timestamp = {Thu, 23 Jun 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/series/cb/SamalKEL0R19.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@incollection{DBLP:series/cb/SimalatsarGRB19, author = {Alena Simalatsar and Monia Guidi and Pierre Roduit and Thierry Buclin}, editor = {Pietro Li{\`{o}} and Paolo Zuliani}, title = {Methods for Personalised Delivery Rate Computation for {IV} Administered Anesthetic Propofol}, booktitle = {Automated Reasoning for Systems Biology and Medicine}, series = {Computational Biology}, volume = {30}, pages = {369--397}, publisher = {Springer}, year = {2019}, url = {https://doi.org/10.1007/978-3-030-17297-8\_14}, doi = {10.1007/978-3-030-17297-8\_14}, timestamp = {Tue, 21 Mar 2023 00:00:00 +0100}, biburl = {https://dblp.org/rec/series/cb/SimalatsarGRB19.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@incollection{DBLP:series/cb/VissatHW19, author = {Ludovica Luisa Vissat and Jane Hillston and Anna Williams}, editor = {Pietro Li{\`{o}} and Paolo Zuliani}, title = {Stochastic Spatial Modelling of the Remyelination Process in Multiple Sclerosis Lesions}, booktitle = {Automated Reasoning for Systems Biology and Medicine}, series = {Computational Biology}, volume = {30}, pages = {299--326}, publisher = {Springer}, year = {2019}, url = {https://doi.org/10.1007/978-3-030-17297-8\_11}, doi = {10.1007/978-3-030-17297-8\_11}, timestamp = {Thu, 13 Jun 2019 01:00:00 +0200}, biburl = {https://dblp.org/rec/series/cb/VissatHW19.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@incollection{DBLP:series/cb/YamanAB19, author = {Fusun Yaman and Aaron Adler and Jacob Beal}, editor = {Pietro Li{\`{o}} and Paolo Zuliani}, title = {Opportunities and Challenges in Applying Artificial Intelligence to Bioengineering}, booktitle = {Automated Reasoning for Systems Biology and Medicine}, series = {Computational Biology}, volume = {30}, pages = {425--452}, publisher = {Springer}, year = {2019}, url = {https://doi.org/10.1007/978-3-030-17297-8\_16}, doi = {10.1007/978-3-030-17297-8\_16}, timestamp = {Thu, 13 Jun 2019 01:00:00 +0200}, biburl = {https://dblp.org/rec/series/cb/YamanAB19.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@book{DBLP:series/cb/30, editor = {Pietro Li{\`{o}} and Paolo Zuliani}, title = {Automated Reasoning for Systems Biology and Medicine}, series = {Computational Biology}, volume = {30}, publisher = {Springer}, year = {2019}, url = {https://doi.org/10.1007/978-3-030-17297-8}, doi = {10.1007/978-3-030-17297-8}, isbn = {978-3-030-17296-1}, timestamp = {Thu, 13 Jun 2019 01:00:00 +0200}, biburl = {https://dblp.org/rec/series/cb/30.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@book{DBLP:series/cb/Mrozek18, author = {Dariusz Mrozek}, title = {Scalable Big Data Analytics for Protein Bioinformatics - Efficient Computational Solutions for Protein Structures}, series = {Computational Biology}, volume = {28}, publisher = {Springer}, year = {2018}, url = {https://doi.org/10.1007/978-3-319-98839-9}, doi = {10.1007/978-3-319-98839-9}, isbn = {978-3-319-98838-2}, timestamp = {Wed, 03 Oct 2018 01:00:00 +0200}, biburl = {https://dblp.org/rec/series/cb/Mrozek18.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@book{DBLP:series/cb/BhowmickS17, author = {Sourav S. Bhowmick and Boon{-}Siew Seah}, title = {Summarizing Biological Networks}, series = {Computational Biology}, volume = {24}, publisher = {Springer}, year = {2017}, url = {https://doi.org/10.1007/978-3-319-54621-6}, doi = {10.1007/978-3-319-54621-6}, isbn = {978-3-319-54620-9}, timestamp = {Tue, 16 May 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/series/cb/BhowmickS17.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@book{DBLP:series/cb/DeBlasioK17, author = {Dan F. DeBlasio and John D. Kececioglu}, title = {Parameter Advising for Multiple Sequence Alignment}, series = {Computational Biology}, volume = {26}, publisher = {Springer}, year = {2017}, url = {https://doi.org/10.1007/978-3-319-64918-4}, doi = {10.1007/978-3-319-64918-4}, isbn = {978-3-319-64917-7}, timestamp = {Sat, 05 Sep 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/series/cb/DeBlasioK17.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@book{DBLP:series/cb/FrommletBR16, author = {Florian Frommlet and Malgorzata Bogdan and David Ramsey}, title = {Phenotypes and Genotypes - The Search for Influential Genes}, series = {Computational Biology}, volume = {18}, publisher = {Springer}, year = {2016}, url = {https://doi.org/10.1007/978-1-4471-5310-8}, doi = {10.1007/978-1-4471-5310-8}, isbn = {978-1-4471-5309-2}, timestamp = {Wed, 21 Feb 2024 00:00:00 +0100}, biburl = {https://dblp.org/rec/series/cb/FrommletBR16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@incollection{DBLP:series/cb/0001K16, author = {J{\"{o}}rg Ackermann and Ina Koch}, editor = {Ina Koch and Wolfgang Reisig and Falk Schreiber}, title = {Quantitative Analysis}, booktitle = {Modeling in Systems Biology, The Petri Net Approach}, series = {Computational Biology}, volume = {16}, pages = {153--178}, publisher = {Springer}, year = {2016}, url = {https://doi.org/10.1007/978-1-84996-474-6\_8}, doi = {10.1007/978-1-84996-474-6\_8}, timestamp = {Mon, 05 Feb 2024 20:35:58 +0100}, biburl = {https://dblp.org/rec/series/cb/0001K16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@incollection{DBLP:series/cb/BanksKS16, author = {Richard Banks and Victor Khomenko and L. Jason Steggles}, editor = {Ina Koch and Wolfgang Reisig and Falk Schreiber}, title = {Modeling Genetic Regulatory Networks}, booktitle = {Modeling in Systems Biology, The Petri Net Approach}, series = {Computational Biology}, volume = {16}, pages = {73--100}, publisher = {Springer}, year = {2016}, url = {https://doi.org/10.1007/978-1-84996-474-6\_5}, doi = {10.1007/978-1-84996-474-6\_5}, timestamp = {Thu, 13 Jun 2019 01:00:00 +0200}, biburl = {https://dblp.org/rec/series/cb/BanksKS16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@incollection{DBLP:series/cb/ChaouiyaKP16, author = {Claudine Chaouiya and Hanna Klaudel and Franck Pommereau}, editor = {Ina Koch and Wolfgang Reisig and Falk Schreiber}, title = {A Modular, Qualitative Modeling of Regulatory Networks Using Petri Nets}, booktitle = {Modeling in Systems Biology, The Petri Net Approach}, series = {Computational Biology}, volume = {16}, pages = {253--279}, publisher = {Springer}, year = {2016}, url = {https://doi.org/10.1007/978-1-84996-474-6\_12}, doi = {10.1007/978-1-84996-474-6\_12}, timestamp = {Thu, 13 Jun 2019 01:00:00 +0200}, biburl = {https://dblp.org/rec/series/cb/ChaouiyaKP16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@incollection{DBLP:series/cb/HardyI16, author = {Simon Hardy and Ravi Iyengar}, editor = {Ina Koch and Wolfgang Reisig and Falk Schreiber}, title = {Analysis of Dynamical Models of Signaling Networks with Petri Nets and Dynamic Graphs}, booktitle = {Modeling in Systems Biology, The Petri Net Approach}, series = {Computational Biology}, volume = {16}, pages = {225--251}, publisher = {Springer}, year = {2016}, url = {https://doi.org/10.1007/978-1-84996-474-6\_11}, doi = {10.1007/978-1-84996-474-6\_11}, timestamp = {Thu, 13 Jun 2019 01:00:00 +0200}, biburl = {https://dblp.org/rec/series/cb/HardyI16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@incollection{DBLP:series/cb/KochS16, author = {Ina Koch and Falk Schreiber}, editor = {Ina Koch and Wolfgang Reisig and Falk Schreiber}, title = {Introduction}, booktitle = {Modeling in Systems Biology, The Petri Net Approach}, series = {Computational Biology}, volume = {16}, pages = {3--18}, publisher = {Springer}, year = {2016}, url = {https://doi.org/10.1007/978-1-84996-474-6\_1}, doi = {10.1007/978-1-84996-474-6\_1}, timestamp = {Mon, 05 Feb 2024 00:00:00 +0100}, biburl = {https://dblp.org/rec/series/cb/KochS16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@incollection{DBLP:series/cb/LiivingBJ16, author = {Tiina Liiving and Syed Murtuza Baker and Bj{\"{o}}rn H. Junker}, editor = {Ina Koch and Wolfgang Reisig and Falk Schreiber}, title = {Biochemical Fundamentals}, booktitle = {Modeling in Systems Biology, The Petri Net Approach}, series = {Computational Biology}, volume = {16}, pages = {19--36}, publisher = {Springer}, year = {2016}, url = {https://doi.org/10.1007/978-1-84996-474-6\_2}, doi = {10.1007/978-1-84996-474-6\_2}, timestamp = {Thu, 13 Jun 2019 01:00:00 +0200}, biburl = {https://dblp.org/rec/series/cb/LiivingBJ16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@incollection{DBLP:series/cb/MitouMMI16, author = {Natsumi Mitou and Hiroshi Matsuno and Satoru Miyano and Shin{-}Ichi T. Inouye}, editor = {Ina Koch and Wolfgang Reisig and Falk Schreiber}, title = {A Case Study of {HFPN} Simulation: Finding Essential Roles of Ror Gene in the Interaction of Feedback Loops in Mammalian Circadian Clock}, booktitle = {Modeling in Systems Biology, The Petri Net Approach}, series = {Computational Biology}, volume = {16}, pages = {281--306}, publisher = {Springer}, year = {2016}, url = {https://doi.org/10.1007/978-1-84996-474-6\_13}, doi = {10.1007/978-1-84996-474-6\_13}, timestamp = {Thu, 13 Jun 2019 01:00:00 +0200}, biburl = {https://dblp.org/rec/series/cb/MitouMMI16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@incollection{DBLP:series/cb/Mura16, author = {Ivan Mura}, editor = {Ina Koch and Wolfgang Reisig and Falk Schreiber}, title = {Stochastic Modeling}, booktitle = {Modeling in Systems Biology, The Petri Net Approach}, series = {Computational Biology}, volume = {16}, pages = {121--151}, publisher = {Springer}, year = {2016}, url = {https://doi.org/10.1007/978-1-84996-474-6\_7}, doi = {10.1007/978-1-84996-474-6\_7}, timestamp = {Mon, 16 Sep 2019 01:00:00 +0200}, biburl = {https://dblp.org/rec/series/cb/Mura16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@incollection{DBLP:series/cb/Reisig16, author = {Wolfgang Reisig}, editor = {Ina Koch and Wolfgang Reisig and Falk Schreiber}, title = {Petri Nets}, booktitle = {Modeling in Systems Biology, The Petri Net Approach}, series = {Computational Biology}, volume = {16}, pages = {37--56}, publisher = {Springer}, year = {2016}, url = {https://doi.org/10.1007/978-1-84996-474-6\_3}, doi = {10.1007/978-1-84996-474-6\_3}, timestamp = {Thu, 13 Jun 2019 01:00:00 +0200}, biburl = {https://dblp.org/rec/series/cb/Reisig16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@incollection{DBLP:series/cb/Sackmann16, author = {Andrea Sackmann}, editor = {Ina Koch and Wolfgang Reisig and Falk Schreiber}, title = {Discrete Modeling}, booktitle = {Modeling in Systems Biology, The Petri Net Approach}, series = {Computational Biology}, volume = {16}, pages = {59--72}, publisher = {Springer}, year = {2016}, url = {https://doi.org/10.1007/978-1-84996-474-6\_4}, doi = {10.1007/978-1-84996-474-6\_4}, timestamp = {Thu, 13 Jun 2019 01:00:00 +0200}, biburl = {https://dblp.org/rec/series/cb/Sackmann16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@incollection{DBLP:series/cb/SaitoNMM16, author = {Ayumu Saito and Masao Nagasaki and Hiroshi Matsuno and Satoru Miyano}, editor = {Ina Koch and Wolfgang Reisig and Falk Schreiber}, title = {Hybrid Functional Petri Net with Extension for Dynamic Pathway Modeling}, booktitle = {Modeling in Systems Biology, The Petri Net Approach}, series = {Computational Biology}, volume = {16}, pages = {101--120}, publisher = {Springer}, year = {2016}, url = {https://doi.org/10.1007/978-1-84996-474-6\_6}, doi = {10.1007/978-1-84996-474-6\_6}, timestamp = {Thu, 13 Jun 2019 01:00:00 +0200}, biburl = {https://dblp.org/rec/series/cb/SaitoNMM16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@incollection{DBLP:series/cb/SchusterJ16, author = {Stefan Schuster and Bj{\"{o}}rn H. Junker}, editor = {Ina Koch and Wolfgang Reisig and Falk Schreiber}, title = {Topological Analysis of Metabolic and Regulatory Networks}, booktitle = {Modeling in Systems Biology, The Petri Net Approach}, series = {Computational Biology}, volume = {16}, pages = {209--224}, publisher = {Springer}, year = {2016}, url = {https://doi.org/10.1007/978-1-84996-474-6\_10}, doi = {10.1007/978-1-84996-474-6\_10}, timestamp = {Thu, 13 Jun 2019 01:00:00 +0200}, biburl = {https://dblp.org/rec/series/cb/SchusterJ16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@incollection{DBLP:series/cb/Wagler16, author = {Annegret Wagler}, editor = {Ina Koch and Wolfgang Reisig and Falk Schreiber}, title = {Prediction of Network Structure}, booktitle = {Modeling in Systems Biology, The Petri Net Approach}, series = {Computational Biology}, volume = {16}, pages = {307--336}, publisher = {Springer}, year = {2016}, url = {https://doi.org/10.1007/978-1-84996-474-6\_14}, doi = {10.1007/978-1-84996-474-6\_14}, timestamp = {Thu, 13 Jun 2019 01:00:00 +0200}, biburl = {https://dblp.org/rec/series/cb/Wagler16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@incollection{DBLP:series/cb/WindhagerEZ16, author = {Lukas Windhager and Florian Erhard and Ralf Zimmer}, editor = {Ina Koch and Wolfgang Reisig and Falk Schreiber}, title = {Fuzzy Modeling}, booktitle = {Modeling in Systems Biology, The Petri Net Approach}, series = {Computational Biology}, volume = {16}, pages = {179--205}, publisher = {Springer}, year = {2016}, url = {https://doi.org/10.1007/978-1-84996-474-6\_9}, doi = {10.1007/978-1-84996-474-6\_9}, timestamp = {Thu, 13 Jun 2019 01:00:00 +0200}, biburl = {https://dblp.org/rec/series/cb/WindhagerEZ16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@book{DBLP:series/cb/Axelson-Fisk15, author = {Marina Axelson{-}Fisk}, title = {Comparative Gene Finding - Models, Algorithms and Implementation}, series = {Computational Biology}, volume = {20}, publisher = {Springer}, year = {2015}, url = {https://doi.org/10.1007/978-1-4471-6693-1}, doi = {10.1007/978-1-4471-6693-1}, isbn = {978-1-4471-6692-4}, timestamp = {Tue, 16 May 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/series/cb/Axelson-Fisk15.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@book{DBLP:series/cb/Erciyes15, author = {Kayhan Erciyes}, title = {Distributed and Sequential Algorithms for Bioinformatics}, series = {Computational Biology}, volume = {23}, publisher = {Springer}, year = {2015}, url = {https://doi.org/10.1007/978-3-319-24966-7}, doi = {10.1007/978-3-319-24966-7}, isbn = {978-3-319-24964-3}, timestamp = {Tue, 16 May 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/series/cb/Erciyes15.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@book{DBLP:series/cb/Ramsden15, author = {Jeremy Ramsden}, title = {Bioinformatics - An Introduction, Third Edition}, series = {Computational Biology}, volume = {21}, publisher = {Springer}, year = {2015}, url = {https://doi.org/10.1007/978-1-4471-6702-0}, doi = {10.1007/978-1-4471-6702-0}, isbn = {978-1-4471-6701-3}, timestamp = {Tue, 16 May 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/series/cb/Ramsden15.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@book{DBLP:series/cb/Saitou13, author = {Naruya Saitou}, title = {Introduction to Evolutionary Genomics}, series = {Computational Biology}, volume = {17}, publisher = {Springer}, year = {2013}, url = {https://doi.org/10.1007/978-1-4471-5304-7}, doi = {10.1007/978-1-4471-5304-7}, isbn = {978-1-4471-5303-0}, timestamp = {Tue, 16 May 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/series/cb/Saitou13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@book{DBLP:series/cb/16, editor = {Ina Koch and Wolfgang Reisig and Falk Schreiber}, title = {Modeling in Systems Biology, The Petri Net Approach}, series = {Computational Biology}, volume = {16}, publisher = {Springer}, year = {2011}, url = {https://doi.org/10.1007/978-1-84996-474-6}, doi = {10.1007/978-1-84996-474-6}, isbn = {978-1-84996-473-9}, timestamp = {Mon, 05 Feb 2024 00:00:00 +0100}, biburl = {https://dblp.org/rec/series/cb/16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@book{DBLP:series/cb/Axelson-Fisk10, author = {Marina Axelson{-}Fisk}, title = {Comparative Gene Finding - Models, Algorithms and Implementation}, series = {Computational Biology}, volume = {11}, publisher = {Springer}, year = {2010}, url = {https://doi.org/10.1007/978-1-84996-104-2}, doi = {10.1007/978-1-84996-104-2}, isbn = {978-1-84996-103-5}, timestamp = {Tue, 16 May 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/series/cb/Axelson-Fisk10.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@book{DBLP:books/daglib/0031651, author = {Masao Nagasaki and Ayumu Saito and Atsushi Doi and Hiroshi Matsuno and Satoru Miyano}, title = {Foundations of Systems Biology - Using Cell Illustrator{\textregistered} and Pathway Databases}, series = {Computational Biology}, volume = {13}, publisher = {Springer}, year = {2009}, url = {https://doi.org/10.1007/978-1-84882-023-4}, doi = {10.1007/978-1-84882-023-4}, isbn = {978-1-84882-022-7}, timestamp = {Tue, 16 May 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/books/daglib/0031651.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@book{DBLP:series/cb/ChaoZ09, author = {Kun{-}Mao Chao and Louxin Zhang}, title = {Sequence Comparison - Theory and Methods}, series = {Computational Biology}, volume = {7}, publisher = {Springer}, year = {2009}, url = {https://doi.org/10.1007/978-1-84800-320-0}, doi = {10.1007/978-1-84800-320-0}, isbn = {978-1-84800-319-4}, timestamp = {Tue, 16 May 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/series/cb/ChaoZ09.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@book{DBLP:series/cb/Ramsden09, author = {Jeremy J. Ramsden}, title = {Bioinformatics: An Introduction, Second Edition}, series = {Computational Biology}, volume = {10}, publisher = {Springer}, year = {2009}, url = {https://doi.org/10.1007/978-1-84800-257-9}, doi = {10.1007/978-1-84800-257-9}, isbn = {978-1-84800-256-2}, timestamp = {Tue, 16 May 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/series/cb/Ramsden09.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@book{DBLP:series/cb/UsseryWB09, author = {David Ussery and Trudy M. Wassenaar and Stefano Borini}, title = {Computing for Comparative Microbial Genomics - Bioinformatics for Microbiologists}, series = {Computational Biology}, volume = {8}, publisher = {Springer}, year = {2009}, url = {https://doi.org/10.1007/978-1-84800-255-5}, doi = {10.1007/978-1-84800-255-5}, isbn = {978-1-84800-254-8}, timestamp = {Wed, 14 Nov 2018 00:00:00 +0100}, biburl = {https://dblp.org/rec/series/cb/UsseryWB09.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@incollection{DBLP:books/sp/08/000108a, author = {Mona Singh}, editor = {Anna R. Panchenko and Teresa M. Przytycka}, title = {From Protein Interaction Networks to Protein Function}, booktitle = {Protein-protein Interactions and Networks: Identification, Computer Analysis, and Prediction}, series = {Computational Biology}, volume = {9}, pages = {139--162}, publisher = {Springer}, year = {2008}, url = {https://doi.org/10.1007/978-1-84800-125-1\_8}, doi = {10.1007/978-1-84800-125-1\_8}, timestamp = {Thu, 28 May 2020 13:10:24 +0200}, biburl = {https://dblp.org/rec/books/sp/08/000108a.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@incollection{DBLP:books/sp/08/AlberCRS08, author = {Frank Alber and Brian T. Chait and Michael P. Rout and Andrej Sali}, editor = {Anna R. Panchenko and Teresa M. Przytycka}, title = {Integrative Structure Determination of Protein Assemblies by Satisfaction of Spatial Restraints}, booktitle = {Protein-protein Interactions and Networks: Identification, Computer Analysis, and Prediction}, series = {Computational Biology}, volume = {9}, pages = {99--114}, publisher = {Springer}, year = {2008}, url = {https://doi.org/10.1007/978-1-84800-125-1\_6}, doi = {10.1007/978-1-84800-125-1\_6}, timestamp = {Thu, 28 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/books/sp/08/AlberCRS08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@incollection{DBLP:books/sp/08/GuimaraesP08, author = {Katia S. Guimar{\~{a}}es and Teresa M. Przytycka}, editor = {Anna R. Panchenko and Teresa M. Przytycka}, title = {Protein Interaction Network Based Prediction of Domain-Domain and Domain-Peptide Interactions}, booktitle = {Protein-protein Interactions and Networks: Identification, Computer Analysis, and Prediction}, series = {Computational Biology}, volume = {9}, pages = {83--98}, publisher = {Springer}, year = {2008}, url = {https://doi.org/10.1007/978-1-84800-125-1\_5}, doi = {10.1007/978-1-84800-125-1\_5}, timestamp = {Thu, 28 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/books/sp/08/GuimaraesP08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@incollection{DBLP:books/sp/08/KeskinGN08, author = {Ozlem Keskin and Attila G{\"{u}}rsoy and Ruth Nussinov}, editor = {Anna R. Panchenko and Teresa M. Przytycka}, title = {Principles of Protein Recognition and Properties of Protein-protein Interfaces}, booktitle = {Protein-protein Interactions and Networks: Identification, Computer Analysis, and Prediction}, series = {Computational Biology}, volume = {9}, pages = {53--65}, publisher = {Springer}, year = {2008}, url = {https://doi.org/10.1007/978-1-84800-125-1\_3}, doi = {10.1007/978-1-84800-125-1\_3}, timestamp = {Thu, 28 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/books/sp/08/KeskinGN08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@incollection{DBLP:books/sp/08/Maslov08, author = {Sergei Maslov}, editor = {Anna R. Panchenko and Teresa M. Przytycka}, title = {Topological and Dynamical Properties of Protein Interaction Networks}, booktitle = {Protein-protein Interactions and Networks: Identification, Computer Analysis, and Prediction}, series = {Computational Biology}, volume = {9}, pages = {115--137}, publisher = {Springer}, year = {2008}, url = {https://doi.org/10.1007/978-1-84800-125-1\_7}, doi = {10.1007/978-1-84800-125-1\_7}, timestamp = {Thu, 28 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/books/sp/08/Maslov08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@incollection{DBLP:books/sp/08/ShoemakerP08, author = {Benjamin A. Shoemaker and Anna R. Panchenko}, editor = {Anna R. Panchenko and Teresa M. Przytycka}, title = {Handling Diverse Protein Interaction Data: Integration, Storage and Retrieval}, booktitle = {Protein-protein Interactions and Networks: Identification, Computer Analysis, and Prediction}, series = {Computational Biology}, volume = {9}, pages = {33--51}, publisher = {Springer}, year = {2008}, url = {https://doi.org/10.1007/978-1-84800-125-1\_2}, doi = {10.1007/978-1-84800-125-1\_2}, timestamp = {Thu, 28 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/books/sp/08/ShoemakerP08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@incollection{DBLP:books/sp/08/UetzTC08, author = {Peter Uetz and Bj{\"{o}}rn Titz and Gerard Cagney}, editor = {Anna R. Panchenko and Teresa M. Przytycka}, title = {Experimental Methods for Protein Interaction Identification and Characterization}, booktitle = {Protein-protein Interactions and Networks: Identification, Computer Analysis, and Prediction}, series = {Computational Biology}, volume = {9}, pages = {1--32}, publisher = {Springer}, year = {2008}, url = {https://doi.org/10.1007/978-1-84800-125-1\_1}, doi = {10.1007/978-1-84800-125-1\_1}, timestamp = {Mon, 15 Jun 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/books/sp/08/UetzTC08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@incollection{DBLP:books/sp/08/ValenciaP08, author = {Alfonso Valencia and Florencio Pazos}, editor = {Anna R. Panchenko and Teresa M. Przytycka}, title = {Computational Methods to Predict Protein Interaction Partners}, booktitle = {Protein-protein Interactions and Networks: Identification, Computer Analysis, and Prediction}, series = {Computational Biology}, volume = {9}, pages = {67--81}, publisher = {Springer}, year = {2008}, url = {https://doi.org/10.1007/978-1-84800-125-1\_4}, doi = {10.1007/978-1-84800-125-1\_4}, timestamp = {Thu, 28 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/books/sp/08/ValenciaP08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@incollection{DBLP:books/sp/08/YosefRS08, author = {Nir Yosef and Eytan Ruppin and Roded Sharan}, editor = {Anna R. Panchenko and Teresa M. Przytycka}, title = {Cross-Species Analysis of Protein-protein Interaction Networks}, booktitle = {Protein-protein Interactions and Networks: Identification, Computer Analysis, and Prediction}, series = {Computational Biology}, volume = {9}, pages = {163--185}, publisher = {Springer}, year = {2008}, url = {https://doi.org/10.1007/978-1-84800-125-1\_9}, doi = {10.1007/978-1-84800-125-1\_9}, timestamp = {Thu, 28 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/books/sp/08/YosefRS08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@incollection{DBLP:series/cb/AitkenC08, author = {J. Stuart Aitken and Yin Chen}, editor = {Albert Burger and Duncan Davidson and Richard A. Baldock}, title = {COBrA and COBrA-CT: Ontology Engineering Tools}, booktitle = {Anatomy Ontologies for Bioinformatics, Principles and Practice}, series = {Computational Biology}, volume = {6}, pages = {151--162}, publisher = {Springer}, year = {2008}, url = {https://doi.org/10.1007/978-1-84628-885-2\_7}, doi = {10.1007/978-1-84628-885-2\_7}, timestamp = {Thu, 13 Jun 2019 09:41:49 +0200}, biburl = {https://dblp.org/rec/series/cb/AitkenC08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@incollection{DBLP:series/cb/BaldockB08, author = {Richard A. Baldock and Albert Burger}, editor = {Albert Burger and Duncan Davidson and Richard A. Baldock}, title = {Anatomical Ontologies: Linking Names to Places in Biology}, booktitle = {Anatomy Ontologies for Bioinformatics, Principles and Practice}, series = {Computational Biology}, volume = {6}, pages = {197--211}, publisher = {Springer}, year = {2008}, url = {https://doi.org/10.1007/978-1-84628-885-2\_10}, doi = {10.1007/978-1-84628-885-2\_10}, timestamp = {Thu, 13 Jun 2019 01:00:00 +0200}, biburl = {https://dblp.org/rec/series/cb/BaldockB08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@incollection{DBLP:series/cb/BaldockD08, author = {Richard A. Baldock and Duncan Davidson}, editor = {Albert Burger and Duncan Davidson and Richard A. Baldock}, title = {The Edinburgh Mouse Atlas}, booktitle = {Anatomy Ontologies for Bioinformatics, Principles and Practice}, series = {Computational Biology}, volume = {6}, pages = {249--265}, publisher = {Springer}, year = {2008}, url = {https://doi.org/10.1007/978-1-84628-885-2\_12}, doi = {10.1007/978-1-84628-885-2\_12}, timestamp = {Thu, 13 Jun 2019 01:00:00 +0200}, biburl = {https://dblp.org/rec/series/cb/BaldockD08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@incollection{DBLP:series/cb/Bard08, author = {Jonathan Bard}, editor = {Albert Burger and Duncan Davidson and Richard A. Baldock}, title = {Anatomical Ontologies for Model Organisms: The Fungi and Animals}, booktitle = {Anatomy Ontologies for Bioinformatics, Principles and Practice}, series = {Computational Biology}, volume = {6}, pages = {3--25}, publisher = {Springer}, year = {2008}, url = {https://doi.org/10.1007/978-1-84628-885-2\_1}, doi = {10.1007/978-1-84628-885-2\_1}, timestamp = {Thu, 13 Jun 2019 01:00:00 +0200}, biburl = {https://dblp.org/rec/series/cb/Bard08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@incollection{DBLP:series/cb/BittnerDGN08, author = {Thomas Bittner and Maureen Donnelly and Louis J. Goldberg and Fabian Neuhaus}, editor = {Albert Burger and Duncan Davidson and Richard A. Baldock}, title = {Modeling Principles and Methodologies - Spatial Representation and Reasoning}, booktitle = {Anatomy Ontologies for Bioinformatics, Principles and Practice}, series = {Computational Biology}, volume = {6}, pages = {307--326}, publisher = {Springer}, year = {2008}, url = {https://doi.org/10.1007/978-1-84628-885-2\_15}, doi = {10.1007/978-1-84628-885-2\_15}, timestamp = {Thu, 13 Jun 2019 01:00:00 +0200}, biburl = {https://dblp.org/rec/series/cb/BittnerDGN08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@incollection{DBLP:series/cb/BurgerB08, author = {Albert Burger and Jonathan Bard}, editor = {Albert Burger and Duncan Davidson and Richard A. Baldock}, title = {{XSPAN} - {A} Cross-Species Anatomy Network}, booktitle = {Anatomy Ontologies for Bioinformatics, Principles and Practice}, series = {Computational Biology}, volume = {6}, pages = {163--175}, publisher = {Springer}, year = {2008}, url = {https://doi.org/10.1007/978-1-84628-885-2\_8}, doi = {10.1007/978-1-84628-885-2\_8}, timestamp = {Thu, 13 Jun 2019 01:00:00 +0200}, biburl = {https://dblp.org/rec/series/cb/BurgerB08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@incollection{DBLP:series/cb/Davidson08, author = {Duncan Davidson}, editor = {Albert Burger and Duncan Davidson and Richard A. Baldock}, title = {Time in Anatomy}, booktitle = {Anatomy Ontologies for Bioinformatics, Principles and Practice}, series = {Computational Biology}, volume = {6}, pages = {213--247}, publisher = {Springer}, year = {2008}, url = {https://doi.org/10.1007/978-1-84628-885-2\_11}, doi = {10.1007/978-1-84628-885-2\_11}, timestamp = {Thu, 13 Jun 2019 01:00:00 +0200}, biburl = {https://dblp.org/rec/series/cb/Davidson08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@incollection{DBLP:series/cb/HaendelNOMMM008, author = {Melissa A. Haendel and Fabian Neuhaus and David Osumi{-}Sutherland and Paula M. Mabee and Jos{\'{e}} L. V. Mejino Jr. and Chris Mungall and Barry Smith}, editor = {Albert Burger and Duncan Davidson and Richard A. Baldock}, title = {{CARO} - The Common Anatomy Reference Ontology}, booktitle = {Anatomy Ontologies for Bioinformatics, Principles and Practice}, series = {Computational Biology}, volume = {6}, pages = {327--349}, publisher = {Springer}, year = {2008}, url = {https://doi.org/10.1007/978-1-84628-885-2\_16}, doi = {10.1007/978-1-84628-885-2\_16}, timestamp = {Mon, 16 Sep 2019 01:00:00 +0200}, biburl = {https://dblp.org/rec/series/cb/HaendelNOMMM008.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@incollection{DBLP:series/cb/IlicRKS08, author = {Katica Ilic and Seung Yon Rhee and Elizabeth A. Kellogg and Peter F. Stevens}, editor = {Albert Burger and Duncan Davidson and Richard A. Baldock}, title = {Plant Structure Ontology {(PSO)} - {A} Morphological and Anatomical Ontology of Flowering Plants}, booktitle = {Anatomy Ontologies for Bioinformatics, Principles and Practice}, series = {Computational Biology}, volume = {6}, pages = {27--42}, publisher = {Springer}, year = {2008}, url = {https://doi.org/10.1007/978-1-84628-885-2\_2}, doi = {10.1007/978-1-84628-885-2\_2}, timestamp = {Thu, 13 Jun 2019 01:00:00 +0200}, biburl = {https://dblp.org/rec/series/cb/IlicRKS08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@incollection{DBLP:series/cb/LambrixT08, author = {Patrick Lambrix and He Tan}, editor = {Albert Burger and Duncan Davidson and Richard A. Baldock}, title = {Ontology Alignment and Merging}, booktitle = {Anatomy Ontologies for Bioinformatics, Principles and Practice}, series = {Computational Biology}, volume = {6}, pages = {133--149}, publisher = {Springer}, year = {2008}, url = {https://doi.org/10.1007/978-1-84628-885-2\_6}, doi = {10.1007/978-1-84628-885-2\_6}, timestamp = {Mon, 16 Sep 2019 01:00:00 +0200}, biburl = {https://dblp.org/rec/series/cb/LambrixT08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@incollection{DBLP:series/cb/MartoneZGMTWFLE08, author = {Maryann E. Martone and Ilya Zaslavsky and Amarnath Gupta and Asif Memon and Joshua Tran and Willy Wong and Lisa Fong and Stephen D. Larson and Mark H. Ellisman}, editor = {Albert Burger and Duncan Davidson and Richard A. Baldock}, title = {The Smart Atlas: Spatial and Semantic Strategies for Multiscale Integration of Brain Data}, booktitle = {Anatomy Ontologies for Bioinformatics, Principles and Practice}, series = {Computational Biology}, volume = {6}, pages = {267--286}, publisher = {Springer}, year = {2008}, url = {https://doi.org/10.1007/978-1-84628-885-2\_13}, doi = {10.1007/978-1-84628-885-2\_13}, timestamp = {Thu, 13 Jun 2019 01:00:00 +0200}, biburl = {https://dblp.org/rec/series/cb/MartoneZGMTWFLE08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@incollection{DBLP:series/cb/Neuhaus008, author = {Fabian Neuhaus and Barry Smith}, editor = {Albert Burger and Duncan Davidson and Richard A. Baldock}, title = {Modelling Principles and Methodologies - Relations in Anatomical Ontologies}, booktitle = {Anatomy Ontologies for Bioinformatics, Principles and Practice}, series = {Computational Biology}, volume = {6}, pages = {289--306}, publisher = {Springer}, year = {2008}, url = {https://doi.org/10.1007/978-1-84628-885-2\_14}, doi = {10.1007/978-1-84628-885-2\_14}, timestamp = {Thu, 13 Jun 2019 01:00:00 +0200}, biburl = {https://dblp.org/rec/series/cb/Neuhaus008.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@incollection{DBLP:series/cb/Rector08, author = {Alan L. Rector}, editor = {Albert Burger and Duncan Davidson and Richard A. Baldock}, title = {Anatomy for Clinical Terminology}, booktitle = {Anatomy Ontologies for Bioinformatics, Principles and Practice}, series = {Computational Biology}, volume = {6}, pages = {43--57}, publisher = {Springer}, year = {2008}, url = {https://doi.org/10.1007/978-1-84628-885-2\_3}, doi = {10.1007/978-1-84628-885-2\_3}, timestamp = {Thu, 13 Jun 2019 01:00:00 +0200}, biburl = {https://dblp.org/rec/series/cb/Rector08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@incollection{DBLP:series/cb/RosseM08, author = {Cornelius Rosse and Jos{\'{e}} L. V. Mejino Jr.}, editor = {Albert Burger and Duncan Davidson and Richard A. Baldock}, title = {The Foundational Model of Anatomy Ontology}, booktitle = {Anatomy Ontologies for Bioinformatics, Principles and Practice}, series = {Computational Biology}, volume = {6}, pages = {59--117}, publisher = {Springer}, year = {2008}, url = {https://doi.org/10.1007/978-1-84628-885-2\_4}, doi = {10.1007/978-1-84628-885-2\_4}, timestamp = {Thu, 13 Jun 2019 01:00:00 +0200}, biburl = {https://dblp.org/rec/series/cb/RosseM08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@incollection{DBLP:series/cb/SchofieldRG08, author = {Paul N. Schofield and Bj{\"{o}}rn Rozell and Georgios V. Gkoutos}, editor = {Albert Burger and Duncan Davidson and Richard A. Baldock}, title = {Towards a Disease Ontology}, booktitle = {Anatomy Ontologies for Bioinformatics, Principles and Practice}, series = {Computational Biology}, volume = {6}, pages = {119--130}, publisher = {Springer}, year = {2008}, url = {https://doi.org/10.1007/978-1-84628-885-2\_5}, doi = {10.1007/978-1-84628-885-2\_5}, timestamp = {Mon, 16 Sep 2019 01:00:00 +0200}, biburl = {https://dblp.org/rec/series/cb/SchofieldRG08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@incollection{DBLP:series/cb/WachterADH008, author = {Thomas W{\"{a}}chter and Dimitra Alexopoulou and Heiko Dietze and J{\"{o}}rg Hakenberg and Michael Schroeder}, editor = {Albert Burger and Duncan Davidson and Richard A. Baldock}, title = {Searching Biomedical Literature with Anatomy Ontologies}, booktitle = {Anatomy Ontologies for Bioinformatics, Principles and Practice}, series = {Computational Biology}, volume = {6}, pages = {177--194}, publisher = {Springer}, year = {2008}, url = {https://doi.org/10.1007/978-1-84628-885-2\_9}, doi = {10.1007/978-1-84628-885-2\_9}, timestamp = {Mon, 16 Sep 2019 01:00:00 +0200}, biburl = {https://dblp.org/rec/series/cb/WachterADH008.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@book{DBLP:books/sp/08/PP2008, editor = {Anna R. Panchenko and Teresa M. Przytycka}, title = {Protein-protein Interactions and Networks: Identification, Computer Analysis, and Prediction}, series = {Computational Biology}, volume = {9}, publisher = {Springer}, year = {2008}, url = {https://doi.org/10.1007/978-1-84800-125-1}, doi = {10.1007/978-1-84800-125-1}, isbn = {978-1-84800-124-4}, timestamp = {Thu, 28 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/books/sp/08/PP2008.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@book{DBLP:series/cb/6, editor = {Albert Burger and Duncan Davidson and Richard A. Baldock}, title = {Anatomy Ontologies for Bioinformatics, Principles and Practice}, series = {Computational Biology}, volume = {6}, publisher = {Springer}, year = {2008}, url = {https://doi.org/10.1007/978-1-84628-885-2}, doi = {10.1007/978-1-84628-885-2}, isbn = {978-1-84628-884-5}, timestamp = {Thu, 13 Jun 2019 01:00:00 +0200}, biburl = {https://dblp.org/rec/series/cb/6.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@book{DBLP:series/cb/Ramsden04, author = {Jeremy J. Ramsden}, title = {Bioinformatics: An Introduction}, series = {Computational Biology}, volume = {3}, publisher = {Springer}, year = {2004}, url = {https://doi.org/10.1007/978-1-4020-2950-9}, doi = {10.1007/978-1-4020-2950-9}, isbn = {978-94-015-7096-1}, timestamp = {Tue, 16 May 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/series/cb/Ramsden04.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@incollection{DBLP:series/cb/ArmengolP04, author = {Eva Armengol and Enric Plaza}, editor = {Werner Dubitzky and Francisco Azuaje}, title = {Lazy Learning for Predictive Toxicology based on a Chemical Ontology}, booktitle = {Artificial Intelligence Methods And Tools For Systems Biology}, series = {Computational Biology}, volume = {5}, pages = {1--18}, publisher = {Springer}, year = {2004}, url = {https://doi.org/10.1007/978-1-4020-5811-0\_1}, doi = {10.1007/978-1-4020-5811-0\_1}, timestamp = {Thu, 13 Jun 2019 09:26:46 +0200}, biburl = {https://dblp.org/rec/series/cb/ArmengolP04.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@incollection{DBLP:series/cb/CohenH04, author = {K. Bretonnel Cohen and Lawrence Hunter}, editor = {Werner Dubitzky and Francisco Azuaje}, title = {Natural Language Processing and Systems Biology}, booktitle = {Artificial Intelligence Methods And Tools For Systems Biology}, series = {Computational Biology}, volume = {5}, pages = {147--173}, publisher = {Springer}, year = {2004}, url = {https://doi.org/10.1007/978-1-4020-5811-0\_9}, doi = {10.1007/978-1-4020-5811-0\_9}, timestamp = {Mon, 16 Sep 2019 01:00:00 +0200}, biburl = {https://dblp.org/rec/series/cb/CohenH04.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@incollection{DBLP:series/cb/DafasKR004, author = {Panos Dafas and Alexander Kozlenkov and Alan Robinson and Michael Schroeder}, editor = {Werner Dubitzky and Francisco Azuaje}, title = {Integrating Gene Expression Data, Protein Interaction Data, and Ontology-Based Literature Searches}, booktitle = {Artificial Intelligence Methods And Tools For Systems Biology}, series = {Computational Biology}, volume = {5}, pages = {107--127}, publisher = {Springer}, year = {2004}, url = {https://doi.org/10.1007/978-1-4020-5811-0\_7}, doi = {10.1007/978-1-4020-5811-0\_7}, timestamp = {Thu, 13 Jun 2019 01:00:00 +0200}, biburl = {https://dblp.org/rec/series/cb/DafasKR004.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@incollection{DBLP:series/cb/GrasHHZMFMNA04, author = {Robin Gras and David Hern{\'{a}}ndez and Patricia Hernandez and Nadine Zangger and Yoan Mescam and Julien Frey and Olivier Martin and Jacques Nicolas and Ron D. Appel}, editor = {Werner Dubitzky and Francisco Azuaje}, title = {Cooperative Metaheuristics for Exploring Proteomic Data}, booktitle = {Artificial Intelligence Methods And Tools For Systems Biology}, series = {Computational Biology}, volume = {5}, pages = {87--106}, publisher = {Springer}, year = {2004}, url = {https://doi.org/10.1007/978-1-4020-5811-0\_6}, doi = {10.1007/978-1-4020-5811-0\_6}, timestamp = {Wed, 11 Dec 2019 00:00:00 +0100}, biburl = {https://dblp.org/rec/series/cb/GrasHHZMFMNA04.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@incollection{DBLP:series/cb/Lambrix04, author = {Patrick Lambrix}, editor = {Werner Dubitzky and Francisco Azuaje}, title = {Ontologies in Bioinformatics and Systems Biology}, booktitle = {Artificial Intelligence Methods And Tools For Systems Biology}, series = {Computational Biology}, volume = {5}, pages = {129--145}, publisher = {Springer}, year = {2004}, url = {https://doi.org/10.1007/978-1-4020-5811-0\_8}, doi = {10.1007/978-1-4020-5811-0\_8}, timestamp = {Mon, 16 Sep 2019 01:00:00 +0200}, biburl = {https://dblp.org/rec/series/cb/Lambrix04.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@incollection{DBLP:series/cb/LohSASD04, author = {Marco Loh and Miruna Szabo and Rita Almeida and Martin Stetter and Gustavo Deco}, editor = {Werner Dubitzky and Francisco Azuaje}, title = {Computational Neuroscience for Cognitive Brain Functions}, booktitle = {Artificial Intelligence Methods And Tools For Systems Biology}, series = {Computational Biology}, volume = {5}, pages = {197--215}, publisher = {Springer}, year = {2004}, url = {https://doi.org/10.1007/978-1-4020-5811-0\_11}, doi = {10.1007/978-1-4020-5811-0\_11}, timestamp = {Thu, 13 Jun 2019 01:00:00 +0200}, biburl = {https://dblp.org/rec/series/cb/LohSASD04.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@incollection{DBLP:series/cb/MaranS04, author = {Uko Maran and Sulev Sild}, editor = {Werner Dubitzky and Francisco Azuaje}, title = {{QSAR} Modeling of Mutagenicity on Non-Congeneric Sets of Organic Compounds}, booktitle = {Artificial Intelligence Methods And Tools For Systems Biology}, series = {Computational Biology}, volume = {5}, pages = {19--35}, publisher = {Springer}, year = {2004}, url = {https://doi.org/10.1007/978-1-4020-5811-0\_2}, doi = {10.1007/978-1-4020-5811-0\_2}, timestamp = {Thu, 13 Jun 2019 01:00:00 +0200}, biburl = {https://dblp.org/rec/series/cb/MaranS04.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@incollection{DBLP:series/cb/McCleanSR04, author = {Sally I. McClean and Bryan W. Scotney and Steve Robinson}, editor = {Werner Dubitzky and Francisco Azuaje}, title = {Characterizing Gene Expression Time Series using a Hidden Markov Model}, booktitle = {Artificial Intelligence Methods And Tools For Systems Biology}, series = {Computational Biology}, volume = {5}, pages = {37--50}, publisher = {Springer}, year = {2004}, url = {https://doi.org/10.1007/978-1-4020-5811-0\_3}, doi = {10.1007/978-1-4020-5811-0\_3}, timestamp = {Thu, 13 Jun 2019 01:00:00 +0200}, biburl = {https://dblp.org/rec/series/cb/McCleanSR04.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@incollection{DBLP:series/cb/OoiT04, author = {Chia Huey Ooi and Patrick Tan}, editor = {Werner Dubitzky and Francisco Azuaje}, title = {Analysis of Large-Scale mRNA Expression Data Sets by Genetic Algorithms}, booktitle = {Artificial Intelligence Methods And Tools For Systems Biology}, series = {Computational Biology}, volume = {5}, pages = {51--66}, publisher = {Springer}, year = {2004}, url = {https://doi.org/10.1007/978-1-4020-5811-0\_4}, doi = {10.1007/978-1-4020-5811-0\_4}, timestamp = {Mon, 16 Sep 2019 01:00:00 +0200}, biburl = {https://dblp.org/rec/series/cb/OoiT04.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@incollection{DBLP:series/cb/SomorjaiABBBDDMNPPSZ04, author = {Raymund L. Somorjai and Murray E. Alexander and Richard Baumgartner and Stephanie Booth and Christopher Bowman and Aleksander B. Demko and Brion Dolenko and Marina Mandelzweig and Aleksander E. Nikulin and Nicolino J. Pizzi and Erinija Pranckeviciene and Arthur R. Summers and Peter Zhilkin}, editor = {Werner Dubitzky and Francisco Azuaje}, title = {A Data-Driven, Flexible Machine Learning Strategy for the Classification of Biomedical Data}, booktitle = {Artificial Intelligence Methods And Tools For Systems Biology}, series = {Computational Biology}, volume = {5}, pages = {67--85}, publisher = {Springer}, year = {2004}, url = {https://doi.org/10.1007/978-1-4020-5811-0\_5}, doi = {10.1007/978-1-4020-5811-0\_5}, timestamp = {Mon, 15 Mar 2021 00:00:00 +0100}, biburl = {https://dblp.org/rec/series/cb/SomorjaiABBBDDMNPPSZ04.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@incollection{DBLP:series/cb/StetterSD04, author = {Martin Stetter and Bernd Sch{\"{u}}rmann and Math{\"{a}}us Dejori}, editor = {Werner Dubitzky and Francisco Azuaje}, title = {Systems Level Modeling of Gene Regulatory Networks}, booktitle = {Artificial Intelligence Methods And Tools For Systems Biology}, series = {Computational Biology}, volume = {5}, pages = {175--195}, publisher = {Springer}, year = {2004}, url = {https://doi.org/10.1007/978-1-4020-5811-0\_10}, doi = {10.1007/978-1-4020-5811-0\_10}, timestamp = {Thu, 13 Jun 2019 01:00:00 +0200}, biburl = {https://dblp.org/rec/series/cb/StetterSD04.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@book{DBLP:series/cb/5, editor = {Werner Dubitzky and Francisco Azuaje}, title = {Artificial Intelligence Methods And Tools For Systems Biology}, series = {Computational Biology}, volume = {5}, publisher = {Springer}, year = {2004}, url = {https://doi.org/10.1007/978-1-4020-5811-0}, doi = {10.1007/978-1-4020-5811-0}, isbn = {978-1-4020-2859-5}, timestamp = {Thu, 13 Jun 2019 01:00:00 +0200}, biburl = {https://dblp.org/rec/series/cb/5.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
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