- Josua Aponte-Serrano, Jordan J. A. Weaver, T. J. Sego, James A. Glazier, Jason E. Shoemaker:
Multicellular spatial model of RNA virus replication and interferon responses reveals factors controlling plaque growth dynamics. PLoS Comput. Biol. 17(10) (2021) - Marco Aqil, Selen Atasoy, Morten L. Kringelbach, Rikkert Hindriks:
Graph neural fields: A framework for spatiotemporal dynamical models on the human connectome. PLoS Comput. Biol. 17(1) (2021) - Suchinta Arif, Melanie Duc Bo Massey, Natalie Klinard, Julie Charbonneau, Loay Jabre, Ana Barbosa Martins, Danielle Gaitor, Rhiannon Kirton, Catalina Albury, Karma Nanglu:
Ten simple rules for supporting historically underrepresented students in science. PLoS Comput. Biol. 17(9) (2021) - Shaun Aron, C. Victor Jongeneel, Paballo Abel Chauke, Melek Chaouch, Judit Kumuthini, Lyndon Zass, Fouzia Radouani, Samar Kamal Kassim, Faisal M. Fadlelmola, Nicola J. Mulder:
Ten simple rules for developing bioinformatics capacity at an academic institution. PLoS Comput. Biol. 17(12) (2021) - Yashika Arora, Pushpinder Walia, Mitsuhiro Hayashibe, Makii Muthalib, Shubhajit Roy Chowdhury, Stéphane Perrey, Anirban Dutta:
Grey-box modeling and hypothesis testing of functional near-infrared spectroscopy-based cerebrovascular reactivity to anodal high-definition tDCS in healthy humans. PLoS Comput. Biol. 17(10) (2021) - Ronan F. Arthur, James H. Jones, Matthew H. Bonds, Yoav Ram, Marcus W. Feldman:
Adaptive social contact rates induce complex dynamics during epidemics. PLoS Comput. Biol. 17(2) (2021) - Christopher J. Arthurs, Rostislav Khlebnikov, Alex Melville, Marija Marcan, Alberto Gómez, Desmond Dillon-Murphy, Federica Cuomo, Miguel Silva Vieira, Jonas Schollenberger, Sabrina R. Lynch, Christopher Tossas-Betancourt, Kritika Iyer, Sara Hopper, Elizabeth Livingston, Pouya Youssefi, Alia Noorani, Sabrina Ben Ahmed, Foeke J. H. Nauta, Theodorus M. J. van Bakel, Yunus Ahmed, Petrus A. J. van Bakel, Jonathan P. Mynard, Paolo Di Achille, Hamid Gharahi, Kevin D. Lau, Vasilina Filonova, Miquel Aguirre, Nitesh Nama, Nan Xiao, Seungik Baek, Krishna C. Garikipati, Onkar Sahni, David Nordsletten, C. Alberto Figueroa:
CRIMSON: An open-source software framework for cardiovascular integrated modelling and simulation. PLoS Comput. Biol. 17(5) (2021) - Go Ashida, Daniel J. Tollin, Jutta Kretzberg:
Robustness of neuronal tuning to binaural sound localization cues against age-related loss of inhibitory synaptic inputs. PLoS Comput. Biol. 17(7) (2021) - Johannes Asplund-Samuelsson, Elton P. Hudson:
Wide range of metabolic adaptations to the acquisition of the Calvin cycle revealed by comparison of microbial genomes. PLoS Comput. Biol. 17(2) (2021) - Pedro de Atauri, Míriam Tarrado-Castellarnau, Josep Tarragó-Celada, Carles Foguet, Effrosyni Karakitsou, Josep J. Centelles, Marta Cascante:
Integrating systemic and molecular levels to infer key drivers sustaining metabolic adaptations. PLoS Comput. Biol. 17(7) (2021) - Nadim A. A. Atiya, Quentin J. M. Huys, Raymond J. Dolan, Stephen M. Fleming:
Explaining distortions in metacognition with an attractor network model of decision uncertainty. PLoS Comput. Biol. 17(7) (2021) - Leon Avery, Brian P. Ingalls, Catherine I. Dumur, Alexander Artyukhin:
A Keller-Segel model for C elegans L1 aggregation. PLoS Comput. Biol. 17(7) (2021) - Diego Barra Avila, Juan Ramon Melendez-Alvarez, Xiao-Jun Tian:
Control of tissue homeostasis, tumorigenesis, and degeneration by coupled bidirectional bistable switches. PLoS Comput. Biol. 17(11) (2021) - Oren Avram, Aya Kigel, Anna Vaisman-Mentesh, Sharon Kligsberg, Shai Rosenstein, Yael Dror, Tal Pupko, Yariv Wine:
PASA: Proteomic analysis of serum antibodies web server. PLoS Comput. Biol. 17(1) (2021) - Ali-Kemal Aydin, William Davis Haselden, Julie Dang, Patrick J. Drew, Serge Charpak, Davide Boido:
Iliski, a software for robust calculation of transfer functions. PLoS Comput. Biol. 17(6) (2021) - Joseph Aylett-Bullock, Carolina Cuesta-Lázaro, Arnau Quera-Bofarull, Anjali Katta, Katherine Hoffmann Pham, Benjamin Hoover, Hendrik Strobelt, Rebeca Moreno Jimenez, Aidan Sedgewick, Egmond Samir Evers, David Kennedy, Sandra Harlass, Allen Gidraf Kahindo Maina, Ahmad Hussien, Miguel A. Luengo-Oroz:
Operational response simulation tool for epidemics within refugee and IDP settlements: A scenario-based case study of the Cox's Bazar settlement. PLoS Comput. Biol. 17(10) (2021) - Asaminew H. Aytenfisu, Daniel Deredge, Erik H. Klontz, Jonathan Du, Eric J. Sundberg, Alexander D. MacKerell Jr.:
Insights into substrate recognition and specificity for IgG by Endoglycosidase S2. PLoS Comput. Biol. 17(7) (2021) - Amir Bahmani, Kyle Ferriter, Vandhana Krishnan, Arash Alavi, Amir Alavi, Philip S. Tsao, Michael P. Snyder, Cuiping Pan:
Swarm: A federated cloud framework for large-scale variant analysis. PLoS Comput. Biol. 17(5) (2021) - Ji Hyun Bak, Min Hyeok Kim, Lei Liu, Changbong Hyeon:
A unified framework for inferring the multi-scale organization of chromatin domains from Hi-C. PLoS Comput. Biol. 17(3) (2021) - Jordan J. Baker, Christopher J. P. Mathy, Julia Schaletzky:
A proposed workflow for proactive virus surveillance and prediction of variants for vaccine design. PLoS Comput. Biol. 17(12) (2021) - Daniel H. Baker, Greta Vilidaite, Alex R. Wade:
Steady-state measures of visual suppression. PLoS Comput. Biol. 17(10) (2021) - Gabriel Balaban, Ivar Grytten, Knut Dagestad Rand, Lonneke Scheffer, Geir Kjetil Sandve:
Ten simple rules for quick and dirty scientific programming. PLoS Comput. Biol. 17(3) (2021) - Emili Balaguer-Ballester, Ramon Nogueira, Juan M. Abolafia, Rubén Moreno-Bote, Maria V. Sanchez-Vives:
Correction: Representation of foreseeable choice outcomes in orbitofrontal cortex triplet-wise interactions. PLoS Comput. Biol. 17(12) (2021) - Suraj Balakrishna, Luisa Salazar-Vizcaya, Axel J. Schmidt, Viacheslav N. Kachalov, Katharina Kusejko, Maria Christine Thurnheer, Jan A. Roth, Dunja Nicca, Matthias Cavassini, Manuel Battegay, Patrick Schmid, Enos Bernasconi, Huldrych F. Günthard, Andri Rauch, Roger D. Kouyos, The Swiss Hiv Cohort Study:
Assessing the drivers of syphilis among men who have sex with men in Switzerland reveals a key impact of screening frequency: A modelling study. PLoS Comput. Biol. 17(10) (2021) - Samhita P. Banavar, Michael Trogdon, Brian Drawert, Tau-Mu Yi, Linda R. Petzold, Otger Campàs:
Coordinating cell polarization and morphogenesis through mechanical feedback. PLoS Comput. Biol. 17(1) (2021) - Alex Baranski, Idan Milo, Shirley Greenbaum, John-Paul Oliveria, Dunja Mrdjen, Michael Angelo, Leeat Keren:
MAUI (MBI Analysis User Interface) - An image processing pipeline for Multiplexed Mass Based Imaging. PLoS Comput. Biol. 17(4) (2021) - Felix Barber, Jiseon Min, Andrew W. Murray, Ariel Amir:
Modeling the impact of single-cell stochasticity and size control on the population growth rate in asymmetrically dividing cells. PLoS Comput. Biol. 17(6) (2021) - Maxim Barenboim, Michal Kovác, Baptiste Ameline, David T. W. Jones, Olaf Witt, Stefan Bielack, Stefan Burdach, Daniel Baumhoer, Michaela Nathrath:
DNA methylation-based classifier and gene expression signatures detect BRCAness in osteosarcoma. PLoS Comput. Biol. 17(11) (2021) - Ayuna Barlukova, Igor M. Rouzine:
The evolutionary origin of the universal distribution of mutation fitness effect. PLoS Comput. Biol. 17(3) (2021) - Claudio Daniel Tenorio de Barros, Maira Arruda Cardoso, Paulo Mascarello Bisch, Helena M. Araujo, Francisco J. P. Lopes:
A reaction-diffusion network model predicts a dual role of Cactus/IκB to regulate Dorsal/NFκB nuclear translocation in Drosophila. PLoS Comput. Biol. 17(5) (2021)