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Publication search results
found 1,968 matches
- 2024
- Iliya Miralavy, Wolfgang Banzhaf:
A Spatial Artificial Chemistry Implementation of a Gene Regulatory Network Aimed at Generating Protein Concentration Dynamics. Artif. Life 30(1): 65-90 (2024) - Xinping Xie, Fengting Wang, Guanfu Wang, Weiwei Zhu, Xiaodong Du, Hongqiang Wang:
Learning the cellular activity representation based on gene regulatory networks for prediction of tumor response to drugs. Artif. Intell. Medicine 152: 102864 (2024) - Emma Paul M., Jereesh A. S., G. Santhosh Kumar:
Reconstruction of gene regulatory networks using graph neural networks. Appl. Soft Comput. 163: 111899 (2024) - Wentao Cui, Qingqing Long, Meng Xiao, Xuezhi Wang, Guihai Feng, Xin Li, Pengfei Wang, Yuanchun Zhou:
Refining computational inference of gene regulatory networks: integrating knockout data within a multi-task framework. Briefings Bioinform. 25(5) (2024) - Zhen Gao, Yansen Su, Junfeng Xia, Rui-Fen Cao, Yun Ding, Chun-Hou Zheng, Pi-Jing Wei:
DeepFGRN: inference of gene regulatory network with regulation type based on directed graph embedding. Briefings Bioinform. 25(3) (2024) - Yahui Lei, Xiao-Tai Huang, Xingli Guo, Kei Hang Katie Chan, Lin Gao:
DeepGRNCS: deep learning-based framework for jointly inferring gene regulatory networks across cell subpopulations. Briefings Bioinform. 25(4) (2024) - Shuo Li, Yan Liu, Long-Chen Shen, He Yan, Jiangning Song, Dong-Jun Yu:
GMFGRN: a matrix factorization and graph neural network approach for gene regulatory network inference. Briefings Bioinform. 25(2) (2024) - Yang Li, Anjun Ma, Yizhong Wang, Qi Guo, Cankun Wang, Hongjun Fu, Bingqiang Liu, Qin Ma:
Enhancer-driven gene regulatory networks inference from single-cell RNA-seq and ATAC-seq data. Briefings Bioinform. 25(5) (2024) - Pi-Jing Wei, Ziqiang Guo, Zhen Gao, Zheng Ding, Rui-Fen Cao, Yansen Su, Chun-Hou Zheng:
Inference of gene regulatory networks based on directed graph convolutional networks. Briefings Bioinform. 25(4) (2024) - Yida Wu, Da Zhou, Jie Hu:
Reconstruction of gene regulatory networks for Caenorhabditis elegans using tree-shaped gene expression data. Briefings Bioinform. 25(5) (2024) - José Eduardo Henriques da Silva, Patrick C. de Carvalho, José J. Camata, Itamar Leite de Oliveira, Heder S. Bernardino:
A Data-Distribution and Successive Spline Points based discretization approach for evolving gene regulatory networks from scRNA-Seq time-series data using Cartesian Genetic Programming. Biosyst. 236: 105126 (2024) - Matteo Bouvier, Souad Zreika, Elodie Vallin, Camille Fourneaux, Sandrine Gonin-Giraud, Arnaud Bonnaffoux, Olivier Gandrillon:
TopoDoE: a design of experiment strategy for selection and refinement in ensembles of executable gene regulatory networks. BMC Bioinform. 25(1): 245 (2024) - Helen Xie, Lorin Crawford, Ashley Mae Conard:
Multioviz: an interactive platform for in silico perturbation and interrogation of gene regulatory networks. BMC Bioinform. 25(1): 249 (2024) - Marzieh Emadi, Farsad Zamani Boroujeni, Jamshid Pirgazi:
Gene regulatory network inference from gene expression data based on knowledge matrix and improved rotation forest. Biomed. Signal Process. Control. 92: 105992 (2024) - Hongyang Jiang, Yuezhu Wang, Chaoyi Yin, Hao Pan, Liqun Chen, Ke Feng, Yi Chang, Huiyan Sun:
SLIVER: Unveiling large scale gene regulatory networks of single-cell transcriptomic data through causal structure learning and modules aggregation. Comput. Biol. Medicine 178: 108690 (2024) - Adrián Segura-Ortiz, José García-Nieto, José Francisco Aldana Montes, Ismael Navas-Delgado:
Multi-objective context-guided consensus of a massive array of techniques for the inference of Gene Regulatory Networks. Comput. Biol. Medicine 179: 108850 (2024) - Naima Vahab, Tarun Bonu, Levin Kuhlmann, Mirana Ramialison, Sonika Tyagi:
Uncovering co-regulatory modules and gene regulatory networks in the heart through machine learning-based analysis of large-scale epigenomic data. Comput. Biol. Medicine 171: 108068 (2024) - Pi-Jing Wei, Jin-Jin Bao, Zhen Gao, Jing-Yun Tan, Rui-Fen Cao, Yansen Su, Chun-Hou Zheng, Li Deng:
MEFFGRN: Matrix enhancement and feature fusion-based method for reconstructing the gene regulatory network of epithelioma papulosum cyprini cells by spring viremia of carp virus infection. Comput. Biol. Medicine 179: 108835 (2024) - Cong Wu:
Positivity and Stability of Caputo Fractional Order Gene Regulatory Networks: The System Comparison Method. Int. J. Intell. Syst. 2024(1) (2024) - Juan Yu, Rui Yao, Cheng Hu:
Cluster synchronization of fractional-order coupled genetic regulatory networks via pinning control. Neurocomputing 607: 128363 (2024) - Mourad Kchaou, Govindasamy Narayanan, M. Syed Ali, Sumaya Sanober, Grienggrai Rajchakit, Bandana Priya:
Finite-time Mittag-Leffler synchronization of delayed fractional-order discrete-time complex-valued genetic regulatory networks: Decomposition and direct approaches. Inf. Sci. 664: 120337 (2024) - Alexander V. Spirov, Ekaterina M. Myasnikova, David M. Holloway:
Body plan evolvability: The role of variability in gene regulatory networks. J. Bioinform. Comput. Biol. 22(3): 2450011:1-2450011:24 (2024) - Guy Karlebach, Peter N. Robinson:
Computing Minimal Boolean Models of Gene Regulatory Networks. J. Comput. Biol. 31(2): 117-127 (2024) - Heewon Park:
Unveiling Gene Regulatory Networks That Characterize Difference of Molecular Interplays Between Gastric Cancer Drug Sensitive and Resistance Cell Lines. J. Comput. Biol. 31(3): 257-274 (2024) - Minde Yan, Chunyan Liu, Xian Zhang, Yantao Wang:
State observer for coupled cyclic genetic regulatory networks with time delays. J. Exp. Theor. Artif. Intell. 36(6): 953-974 (2024) - Jinrong Fan, Xiongbo Wan, You Wu, Banming Ruan:
Finite-time H∞ asynchronous state estimation for stochastically switched delayed genetic regulatory networks with sojourn probabilities. J. Frankl. Inst. 361(5): 106685 (2024) - Ridho Ananda, Kauthar Mohd Daud, Suhaila Zainudin:
A review of advances in integrating gene regulatory networks and metabolic networks for designing strain optimization. J. King Saud Univ. Comput. Inf. Sci. 36(6): 102120 (2024) - Yang Cao, A. Chandrasekar, Thirunavukkarasu Radhika, V. Vijayakumar:
Input-to-state stability of stochastic Markovian jump genetic regulatory networks. Math. Comput. Simul. 222: 174-187 (2024) - Daniel Osório, Anna Capasso, S. Gail Eckhardt, Uma Giri, Alexander Somma, Todd M. Pitts, Christopher H. Lieu, Wells A. Messersmith, Stacey M. Bagby, Harinder Singh, Jishnu Das, Nidhi Sahni, S. Stephen Yi, Marieke L. Kuijjer:
Population-level comparisons of gene regulatory networks modeled on high-throughput single-cell transcriptomics data. Nat. Comput. Sci. 4(3): 237-250 (2024) - Enabling comparative gene regulatory network analysis on single-cell data with SCORPION. Nat. Comput. Sci. 4(3): 167-168 (2024)
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