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Publication search results
found 31 matches
- 2023
- Luca Mollica, Gabriele Giachin:
Recognition Mechanisms between a Nanobody and Disordered Epitopes of the Human Prion Protein: An Integrative Molecular Dynamics Study. J. Chem. Inf. Model. 63(2): 531-545 (2023) - 2022
- Huixia Li, Hongyong Zhao:
Mathematical model of Alzheimer's disease with prion proteins interactions and treatment. Appl. Math. Comput. 433: 127377 (2022) - Mostafa Adimy, Louis Babin, Laurent Pujo-Menjouet:
Neuron Scale Modeling of Prion Production with the Unfolded Protein Response. SIAM J. Appl. Dyn. Syst. 21(4): 2487-2517 (2022) - Kui Xia, Xinpeng Li, Jingjing Xue, Damao Xun, Rongri Tan:
The Effect of Ethanol on Mutant Human Prion Protein using Molecular Dynamics Simulations. BIC 2022: 169-172 - 2020
- Rafat Alam, G. M. Sayedur Rahman, Nahid Hasan, Abu Sayeed Chowdhury:
A De-Novo drug design and ADMET study to design small molecule stabilisers targeting mutant (V210I) human prion protein against familial Creutzfeldt-Jakob disease (fCJD). Int. J. Comput. Biol. Drug Des. 13(1): 21-35 (2020) - Paul Lemarre, Laurent Pujo-Menjouet, Suzanne S. Sindi:
A unifying model for the propagation of prion proteins in yeast brings insight into the [PSI+] prion. PLoS Comput. Biol. 16(5) (2020) - Ye Wang:
The Molecular Dynamics Study on the stability of Elk Prion Protein. ICBBE 2020: 104-108 - 2019
- Gabriele Orlando, Daniele Raimondi, Francesco Tabaro, Francesco Codicè, Yves Moreau, Wim F. Vranken:
Computational identification of prion-like RNA-binding proteins that form liquid phase-separated condensates. Bioinform. 35(22): 4617-4623 (2019) - Valentin Iglesias, Oscar Conchillo-Solé, Cristina Batlle, Salvador Ventura:
AMYCO: evaluation of mutational impact on prion-like proteins aggregation propensity. BMC Bioinform. 20(1): 24:1-24:5 (2019) - Shuangyan Zhou, Yongchang Zhu, Xiaojun Yao, Huanxiang Liu:
Carbon Nanoparticles Inhibit the Aggregation of Prion Protein as Revealed by Experiments and Atomistic Simulations. J. Chem. Inf. Model. 59(5): 1909-1918 (2019) - 2018
- Helen Nathalia Thompson, Claudia Elizabeth Thompson, Rafael A. Caceres, Laurent Emmanuel Dardenne, Paulo A. Netz, Hubert Stassen:
Prion protein conversion triggered by acidic condition: a molecular dynamics study through different force fields. J. Comput. Chem. 39(24): 2000-2011 (2018) - 2015
- Rafael Zambrano, Oscar Conchillo-Solé, Valentin Iglesias, Ricard Illa, Frederic Rousseau, Joost Schymkowitz, Raimon Sabate, Xavier Daura, Salvador Ventura:
PrionW: a server to identify proteins containing glutamine/asparagine rich prion-like domains and their amyloid cores. Nucleic Acids Res. 43(Webserver-Issue): W331-W337 (2015) - Raimon Sabate, Frederic Rousseau, Joost Schymkowitz, Salvador Ventura:
What Makes a Protein Sequence a Prion? PLoS Comput. Biol. 11(1) (2015) - 2014
- Alex Lancaster, Andrew Nutter-Upham, Susan Lindquist, Oliver D. King:
PLAAC: a web and command-line application to identify proteins with prion-like amino acid composition. Bioinform. 30(17): 2501-2502 (2014) - 2013
- Tiziana Sonati, Regina R. Reimann, Jeppe Falsig, Pravas Kumar Baral, Tracy O'Connor, Simone Hornemann, Sine Yaganoglu, Bei Li, Uli S. Herrmann, Barbara Wieland, Mridula Swayampakula, Muhammad Hafizur Rahman, Dipankar Das, Nat Kav, Roland Riek, Pawel P. Liberski, Michael N. G. James, Adriano Aguzzi:
The toxicity of antiprion antibodies is mediated by the flexible tail of the prion protein. Nat. 501(7465): 102-106 (2013) - Julian Garrec, Ivano Tavernelli, Ursula Rothlisberger:
Two Misfolding Routes for the Prion Protein around pH 4.5. PLoS Comput. Biol. 9(5) (2013) - 2012
- Deena M. A. Gendoo, Paul M. Harrison:
The Landscape of the Prion Protein's Structural Response to Mutation Revealed by Principal Component Analysis of Multiple NMR Ensembles. PLoS Comput. Biol. 8(8) (2012) - 2011
- Francis Odeh, Trygve B. Leergaard, Jana Boy, Thorsten Schmidt, Olaf Riess, Jan G. Bjaalie:
Atlas of transgenic Tet-Off Ca2+/calmodulin-dependent protein kinase II and prion protein promoter activity in the mouse brain. NeuroImage 54(4): 2603-2611 (2011) - 2010
- Henryk Faas, Walker S. Jackson, Andrew W. Borkowski, Xinhe Wang, Jiyan Ma, Susan Lindquist, Alan Jasanoff:
Context-dependent perturbation of neural systems in transgenic mice expressing a cytosolic prion protein. NeuroImage 49(3): 2607-2617 (2010) - Wen-Quan Zou, Jue Yuan:
Prion protein and human cognition. IEEE ICCI 2010: 53-60 - 2009
- Reema Taneja, Kennon C. Shelton, Ajit Sadana:
Fractal binding and dissociation kinetics of prion proteins on biosensor surfaces. Appl. Math. Comput. 207(1): 5-22 (2009) - Feng Cui, Kriti Mukhopadhyay, Won-Bin Young, Robert L. Jernigan, Zhijun Wu:
Refinement of under-determined loops of Human Prion Protein by database-derived distance constraints. Int. J. Data Min. Bioinform. 3(4): 454-468 (2009) - Takeshi Ishikawa, Takakazu Ishikura, Kazuo Kuwata:
Theoretical study of the prion protein based on the fragment molecular orbital method. J. Comput. Chem. 30(16): 2594-2601 (2009) - 2008
- Jernej Zidar, Elizabeta T. Pirc, Milan Hodoscek, Peter Bukovec:
Copper(II) Ion Binding to Cellular Prion Protein. J. Chem. Inf. Model. 48(2): 283-287 (2008) - 2006
- Jan Ziegler, Stephan Schwarzinger:
Genetic algorithms as a tool for helix design - computational and experimental studies on prion protein helix 1. J. Comput. Aided Mol. Des. 20(1): 47-54 (2006) - Jana Boy, Trygve B. Leergaard, Thorsten Schmidt, Francis Odeh, Ulrike Bichelmeier, Silke Nuber, Carsten Holzmann, Andreas Wree, Stanley B. Prusiner, Hermann Bujard, Olaf Riess, Jan G. Bjaalie:
Expression mapping of tetracycline-responsive prion protein promoter: Digital atlasing for generating cell-specific disease models. NeuroImage 33(2): 449-462 (2006) - 2004
- Emmanuelle Cotto:
Caractérisation moléculaire de la protéine prion de poisson-zèbre et expression génique au cours du développement. University of Bordeaux 1, France, 2004 - Marvin Carmack:
Chirality of the Disulfide in the Prion Proteins. J. Chem. Inf. Model. 44(1): 286-288 (2004) - 2003
- Igor B. Kuznetsov, Shelly Rackovsky:
Identification of Non-Random Patterns in Structural and Mutational Data: the Case of Prion Protein. CSB 2003: 604-608 - Masakazu Sekijima, Chie Motono, Satoshi Yamasaki, Kiyotoshi Kaneko, Yutaka Akiyama:
Molecular Dynamics Simulation of Prion Protein by Large Scale Cluster Computing. ISHPC 2003: 476-485
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