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Publication search results
found 20 matches
- 2023
- Youjin Kim, Junseok Kwon:
AttSec: protein secondary structure prediction by capturing local patterns from attention map. BMC Bioinform. 24(1): 183 (2023) - 2022
- Rohit De:
Quantum Accelerated Pattern Matching for Genome Sequencing in Complex RNA Secondary Structures. QCE 2022: 842-843 - 2019
- Bernhard C. Thiel, Irene K. Beckmann, Peter Kerpedjiev, Ivo L. Hofacker:
3D based on 2D: Calculating helix angles and stacking patterns using forgi 2.0, an RNA Python library centered on secondary structure elements. F1000Research 8: 287 (2019) - 2015
- Jimmy Ka Ho Chiu, Yi-Ping Phoebe Chen:
Pairwise RNA secondary structure alignment with conserved stem pattern. Bioinform. 31(24): 3914-3921 (2015) - Richard Beal, Donald A. Adjeroh:
Efficient pattern matching for RNA secondary structures. Theor. Comput. Sci. 592: 59-71 (2015) - 2014
- Vincent Austin Hall:
Self organising map machine learning approach to pattern recognition for protein secondary structures and robotic limb control. University of Warwick, Coventry, UK, 2014 - 2012
- Lei Hua, Jason T. L. Wang, Xiang Ji, Ankur Malhotra, Mugdha Khaladkar, Bruce A. Shapiro, Kaizhong Zhang:
A Method for Discovering Common Patterns from Two RNA Secondary Structures and its Application to Structural Repeat Detection. J. Bioinform. Comput. Biol. 10(4) (2012) - 2008
- Matteo Comin, Concettina Guerra, Giuseppe Zanotti:
Mining Overrepresented 3D Patterns of Secondary Structures in proteins. J. Bioinform. Comput. Biol. 6(6): 1067-1087 (2008) - 2006
- Fabian Birzele, Stefan Kramer:
A new representation for protein secondary structure prediction based on frequent patterns. Bioinform. 22(21): 2628-2634 (2006) - Tom Milledge, Gaolin Zheng, Giri Narasimhan:
Discovering Sequence-Structure Patterns in Proteins with Variable Secondary Structure. International Conference on Computational Science (2) 2006: 702-709 - 2005
- Guang-Zheng Zhang, De-Shuang Huang, Yunping Zhu, Yi-Xue Li:
Improving protein secondary structure prediction by using the residue conformational classes. Pattern Recognit. Lett. 26(15): 2346-2352 (2005) - Giancarlo Mauri, Giulio Pavesi:
Algorithms for pattern matching and discovery in RNA secondary structure. Theor. Comput. Sci. 335(1): 29-51 (2005) - Ying Xu, Lusheng Wang, Hao Zhao, Jianping Li:
Exact matching of RNA secondary structure patterns. Theor. Comput. Sci. 335(1): 53-66 (2005) - 2004
- Ying Yu, Lusheng Wang, Xiaotie Deng:
Exact Pattern Matching for RNA Secondary Structures. APBC 2004: 257-263 - 2003
- Giancarlo Mauri, Giulio Pavesi:
Pattern Discovery in RNA Secondary Structure Using Affix Trees. CPM 2003: 278-294 - 1993
- Christophe Geourjon, Gilbert Deléage:
Interactive and graphic coupling between multiple alignments, secondary structure predictions and motif/pattern scanning into proteins. Comput. Appl. Biosci. 9(1): 87-91 (1993) - Scott R. Presnell, Bruce I. Cohen, Fred E. Cohen:
MacMatch: a tool for pattern-based protein secondary structure prediction. Comput. Appl. Biosci. 9(3): 373-374 (1993) - 1991
- Rhonda J. Matteson, Sorojini J. Biswas, Deborah A. Steege:
Distinctive patterns of translational reinitiation in the lac repressor mRNA: bridging of long distances by out-of-frame translation and RNA secondary structure, effects of primary sequence. Nucleic Acids Res. 19(13): 3499-3506 (1991) - 1990
- Daniel Gautheret, François Major, Robert Cedergren:
Pattern searching/alignment with RNA primary and secondary structures: an effective descriptor for tRNA. Comput. Appl. Biosci. 6(4): 325-331 (1990) - 1982
- M. I. Kanehisa, W. B. Goad:
Pattern recognition in nucleic acid sequences. II. An efficient method for finding locally stable secondary structures. Nucleic Acids Res. 10(1): 265-278 (1982)
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