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Publication search results
found 3,721 matches
- 2024
- Takashi Amisaki:
Multilevel superposition for deciphering the conformational variability of protein ensembles. Briefings Bioinform. 25(3) (2024) - Theinmozhi Arulraj, Hanwen Wang, Alberto Ippolito, Shuming Zhang, Elana J. Fertig, Aleksander S. Popel:
Leveraging multi-omics data to empower quantitative systems pharmacology in immuno-oncology. Briefings Bioinform. 25(3) (2024) - Aleksandra E. Badaczewska-Dawid, Karol Wroblewski, Mateusz Kurcinski, Sebastian Kmiecik:
Structure prediction of linear and cyclic peptides using CABS-flex. Briefings Bioinform. 25(2) (2024) - Yury A Barbitoff, Mikhail O. Ushakov, Tatyana E. Lazareva, Yulia A Nasykhova, Andrey S. Glotov, Alexander V. Predeus:
Bioinformatics of germline variant discovery for rare disease diagnostics: current approaches and remaining challenges. Briefings Bioinform. 25(2) (2024) - Thomas G. Brooks, Nicholas F. Lahens, Antonijo Mrcela, Dimitra Sarantopoulou, Soumyashant Nayak, Amruta Naik, Shaon Sengupta, Peter S. Choi, Gregory R. Grant:
BEERS2: RNA-Seq simulation through high fidelity in silico modeling. Briefings Bioinform. 25(3) (2024) - Céline Brouard, Raphaël Mourad, Nathalie Vialaneix:
Should we really use graph neural networks for transcriptomic prediction? Briefings Bioinform. 25(2) (2024) - Yantong Cai, Jia Lv, Rui Li, Xiaowen Huang, Shi Wang, Zhenmin Bao, Qifan Zeng:
Deqformer: high-definition and scalable deep learning probe design method. Briefings Bioinform. 25(2) (2024) - Zhaojia Chen, Noor ul Ain, Qian Zhao, Xingtan Zhang:
From tradition to innovation: conventional and deep learning frameworks in genome annotation. Briefings Bioinform. 25(3) (2024) - Xing Chen, Li Huang:
Computational model for drug research. Briefings Bioinform. 25(3) (2024) - Mingshuai Chen, Mingai Sun, Xi Su, Prayag Tiwari, Yijie Ding:
Fuzzy kernel evidence Random Forest for identifying pseudouridine sites. Briefings Bioinform. 25(3) (2024) - Ken Chen, Yue Zhou, Maolin Ding, Yu Wang, Zhixiang Ren, Yuedong Yang:
Self-supervised learning on millions of primary RNA sequences from 72 vertebrates improves sequence-based RNA splicing prediction. Briefings Bioinform. 25(3) (2024) - Qiuhao Chen, Liyuan Zhang, Yaojia Liu, Zhonghao Qin, Tianyi Zhao:
PUTransGCN: identification of piRNA-disease associations based on attention encoding graph convolutional network and positive unlabelled learning. Briefings Bioinform. 25(3) (2024) - Gulam Sarwar Chuwdhury, Yunshan Guo, Chi-Leung Chiang, Ka-On Lam, Ngar-Woon Kam, Zhonghua Liu, Wei Dai:
ImmuneMirror: A machine learning-based integrative pipeline and web server for neoantigen prediction. Briefings Bioinform. 25(2) (2024) - Olivier Cinquin:
ChIP-GPT: a managed large language model for robust data extraction from biomedical database records. Briefings Bioinform. 25(2) (2024) - Xiao-Hong Ding, Yi Xiao, Fenfang Chen, Cheng-Lin Liu, Tong Fu, Zhi-Ming Shao, Yi-Zhou Jiang:
The HLA-I landscape confers prognosis and antitumor immunity in breast cancer. Briefings Bioinform. 25(3) (2024) - Minghao Fang, Jingwen Fang, Songwen Luo, Ke Liu, Qiaoni Yu, Jiaxuan Yang, Youyang Zhou, Zongkai Li, Ruoming Sun, Chuang Guo, Kun Qu:
eccDNA-pipe: an integrated pipeline for identification, analysis and visualization of extrachromosomal circular DNA from high-throughput sequencing data. Briefings Bioinform. 25(2) (2024) - Zhen Gao, Yansen Su, Junfeng Xia, Rui-Fen Cao, Yun Ding, Chun-Hou Zheng, Pi-Jing Wei:
DeepFGRN: inference of gene regulatory network with regulation type based on directed graph embedding. Briefings Bioinform. 25(3) (2024) - Marc-Antoine Gerault, Samuel Granjeaud, Luc Camoin, Pär Nordlund, Lingyun Dai:
IMPRINTS.CETSA and IMPRINTS.CETSA.app: an R package and a Shiny application for the analysis and interpretation of IMPRINTS-CETSA data. Briefings Bioinform. 25(3) (2024) - Shuang Gu, Chaoliang Wen, Zhen Xiao, Qiang Huang, Zheyi Jiang, Honghong Liu, Jia Gao, Junying Li, Congjiao Sun, Ning Yang:
MyoV: a deep learning-based tool for the automated quantification of muscle fibers. Briefings Bioinform. 25(2) (2024) - Xinyu Guo, Liang Chen:
From G1 to M: a comparative study of methods for identifying cell cycle phases. Briefings Bioinform. 25(2) (2024) - Yue Guo, Haitao Hu, Wenbo Chen, Hao Yin, Jian Wu, Chang-Yu Hsieh, Qiaojun He, Ji Cao:
SynergyX: a multi-modality mutual attention network for interpretable drug synergy prediction. Briefings Bioinform. 25(2) (2024) - Zhen-Hao Guo, Yan-Bin Wang, Siguo Wang, Qinhu Zhang, De-Shuang Huang:
scCorrector: a robust method for integrating multi-study single-cell data. Briefings Bioinform. 25(2) (2024) - Lu-Xiang Guo, Lei Wang, Zhu-Hong You, Chang-Qing Yu, Meng-Lei Hu, Bo-Wei Zhao, Yang Li:
Likelihood-based feature representation learning combined with neighborhood information for predicting circRNA-miRNA associations. Briefings Bioinform. 25(2) (2024) - Seokjin Han, Ji Eun Lee, Seolhee Kang, Minyoung So, Hee Jin, Jang Ho Lee, Sunghyeob Baek, Hyungjin Jun, Tae Yong Kim, Yun-Sil Lee:
Standigm ASK™: knowledge graph and artificial intelligence platform applied to target discovery in idiopathic pulmonary fibrosis. Briefings Bioinform. 25(2) (2024) - Yaofeng Hu, Kai Xiao, Hengyu Yang, Xiaoping Liu, Chuanchao Zhang, Qianqian Shi:
Spatially contrastive variational autoencoder for deciphering tissue heterogeneity from spatially resolved transcriptomics. Briefings Bioinform. 25(2) (2024) - Fengjuan Huang, Xinjie Fan, Ying Wang, Yu Zou, Jiangfang Lian, Chuang Wang, Feng Ding, Yunxiang Sun:
Computational insights into the cross-talk between medin and Aβ: implications for age-related vascular risk factors in Alzheimer's disease. Briefings Bioinform. 25(2) (2024) - Ming-Siang Huang, Jen-Chieh Han, Pei-Yen Lin, Yu-Ting You, Richard Tzong-Han Tsai, Wen-Lian Hsu:
Surveying biomedical relation extraction: a critical examination of current datasets and the proposal of a new resource. Briefings Bioinform. 25(3) (2024) - Jinze Huang, Yang Zhao, Bo Meng, Ao Lu, Yaoguang Wei, Lianhua Dong, Xiang Fang, Dong An, Xinhua Dai:
SEAOP: a statistical ensemble approach for outlier detection in quantitative proteomics data. Briefings Bioinform. 25(3) (2024) - Tram Huynh, Zixuan Cang:
Topological and geometric analysis of cell states in single-cell transcriptomic data. Briefings Bioinform. 25(3) (2024) - Boya Ji, Haitao Zou, Liwen Xu, Xiaolan Xie, Shaoliang Peng:
MUSCLE: multi-view and multi-scale attentional feature fusion for microRNA-disease associations prediction. Briefings Bioinform. 25(3) (2024)
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