• case-insensitive prefix search: default
  e.g., sig matches "SIGIR" as well as "signal"
• exact word search: append dollar sign ($) to word
  e.g., graph$ matches "graph", but not "graphics"
• boolean and: separate words by space
  e.g., codd model
• boolean or: connect words by pipe symbol (|)
  e.g., graph|network

Update May 7, 2017: Please note that we had to disable the phrase search operator (.) and the boolean not operator (-) due to technical problems. For the time being, phrase search queries will yield regular prefix search result, and search terms preceded by a minus will be interpreted as regular (positive) search terms.

found 12,449 matches

• 2024
• 
  Yeremia Gunawan Adhisantoso, Tim Körner, Fabian Müntefering, Jörn Ostermann, Jan Voges:
  HiCMC: High-Efficiency Contact Matrix Compressor. BMC Bioinform. 25(1): 296 (2024)
• 
  Wasim Aftab, Zivkos Apostolou, Karim Bouazoune, Tobias Straub:
  Optimizing biomedical information retrieval with a keyword frequency-driven prompt enhancement strategy. BMC Bioinform. 25(1): 281 (2024)
• 
  Niloofar Aghaieabiane, Ioannis Koutis:
  SGCP: a spectral self-learning method for clustering genes in co-expression networks. BMC Bioinform. 25(1): 230 (2024)
• 
  Fatma S. Ahmed, Saleh Aly, Xiangrong Liu:
  EPI-Trans: an effective transformer-based deep learning model for enhancer promoter interaction prediction. BMC Bioinform. 25(1): 216 (2024)
• 
  Sheikh Hasib Ahmed, Dibyendu Brinto Bose, Rafi Khandoker, M. Saifur Rahman:
  StackDPP: a stacking ensemble based DNA-binding protein prediction model. BMC Bioinform. 25(1): 111 (2024)
• 
  Seungjun Ahn, Somnath Datta:
  Differential network connectivity analysis for microbiome data adjusted for clinical covariates using jackknife pseudo-values. BMC Bioinform. 25(1): 117 (2024)
• 
  Shahid Akbar, Ali Raza, Quan Zou:
  Deepstacked-AVPs: predicting antiviral peptides using tri-segment evolutionary profile and word embedding based multi-perspective features with deep stacking model. BMC Bioinform. 25(1): 102 (2024)
• 
  Nicholas Aksamit, Jinqiang Hou, Yifeng Li, Beatrice M. Ombuki-Berman:
  Integrating transformers and many-objective optimization for drug design. BMC Bioinform. 25(1): 208 (2024)
• 
  Nicholas Aksamit, Alain Tchagang, Yifeng Li, Beatrice M. Ombuki-Berman:
  Hybrid fragment-SMILES tokenization for ADMET prediction in drug discovery. BMC Bioinform. 25(1): 255 (2024)
• 
  Simone Alessandri, Maria L. Ratto, Sergio Rabellino, Gabriele Piacenti, Sandro Gepiro Contaldo, Simone Pernice, Marco Beccuti, Raffaele A. Calogero, Luca Alessandrì:
  CREDO: a friendly Customizable, REproducible, DOcker file generator for bioinformatics applications. BMC Bioinform. 25(1): 110 (2024)
• 
  Laila Viana Almeida, João Luís Reis-Cunha, Daniella C. Bartholomeu:
  dgfr: an R package to assess sequence diversity of gene families. BMC Bioinform. 25(1): 207 (2024)
• 
  Ali Hakem Alsaeedi, Haider Hameed R. Al-Mahmood, Zainab Fahad Alnaseri, Mohammad R. Aziz, Dhiah Al-Shammary, Ayman Ibaida, Khandakar Ahmed:
  Fractal feature selection model for enhancing high-dimensional biological problems. BMC Bioinform. 25(1): 12 (2024)
• 
  Edwin Alvarez-Mamani, Reinhard Dechant, César Armando Beltrán Castañón, Alfredo J. Ibáñez:
  Graph embedding on mass spectrometry- and sequencing-based biomedical data. BMC Bioinform. 25(1): 1 (2024)
• 
  Tim Anderson, Travis J. Wheeler:
  An FPGA-based hardware accelerator supporting sensitive sequence homology filtering with profile hidden Markov models. BMC Bioinform. 25(1): 247 (2024)
• 
  Lorenzo Arcioni, Manuel Arcieri, Jessica Di Martino, Franco Liberati, Paolo Bottoni, Tiziana Castrignanò:
  HPC-T-Annotator: an HPC tool for de novo transcriptome assembly annotation. BMC Bioinform. 25(1): 272 (2024)
• 
  Muhammad Arif, Ge Fang, Ali Ghulam, Saleh Musleh, Tanvir Alam:
  DPI_CDF: druggable protein identifier using cascade deep forest. BMC Bioinform. 25(1): 145 (2024)
• 
  Robert Ebo Armah-Sekum, Sándor Szedmák, Juho Rousu:
  Protein function prediction through multi-view multi-label latent tensor reconstruction. BMC Bioinform. 25(1): 174 (2024)
• 
  Akram Ashyani, Yu-Heng Wu, Huan-Wei Hsu, Torbjörn E. M. Nordling:
  Ideal adaptive control in biological systems: an analysis of $\mathbb {P}$-invariance and dynamical compensation properties. BMC Bioinform. 25(1): 95 (2024)
• 
  Louis J. M. Aslett, Ryan R. Christ:
  kalis: a modern implementation of the Li & Stephens model for local ancestry inference in R. BMC Bioinform. 25(1): 86 (2024)
• 
  Anthony Baptista, Galadriel Brière, Anaïs Baudot:
  Random walk with restart on multilayer networks: from node prioritisation to supervised link prediction and beyond. BMC Bioinform. 25(1): 70 (2024)
• 
  Georgios Bartzis, Carel F. W. Peeters, Wilco Ligterink, Fred A. van Eeuwijk:
  A guided network estimation approach using multi-omic information. BMC Bioinform. 25(1): 202 (2024)
• 
  Tim U. H. Baumeister, Eivind Aadland, Roger G. Linington, Olav M. Kvalheim:
  Multivariate pattern analysis: a method and software to reveal, quantify, and visualize predictive association patterns in multicollinear data. BMC Bioinform. 25(1): 51 (2024)
• 
  Jorge Beltrán, Lisandra Herrera Belén, Fernanda Parraguez Contreras, Jorge G. Farias, Jorge Machuca-Sepúlveda, Stefania Short:
  MultiToxPred 1.0: a novel comprehensive tool for predicting 27 classes of protein toxins using an ensemble machine learning approach. BMC Bioinform. 25(1): 148 (2024)
• 
  Jasper van Bemmelen, Davida S. Smyth, Jasmijn A. Baaijens:
  Amplidiff: an optimized amplicon sequencing approach to estimating lineage abundances in viral metagenomes. BMC Bioinform. 25(1): 126 (2024)
• 
  Adam Bessa-Silva:
  Fasta2Structure: a user-friendly tool for converting multiple aligned FASTA files to STRUCTURE format. BMC Bioinform. 25(1): 73 (2024)
• 
  Hector Roux de Bézieux, Kelly Street, Stephan Fischer, Koen Van den Berge, Rebecca Chance, Davide Risso, Jesse A. Gillis, John Ngai, Elizabeth Purdom, Sandrine Dudoit:
  Improving replicability in single-cell RNA-Seq cell type discovery with Dune. BMC Bioinform. 25(1): 198 (2024)
• 
  Oieswarya Bhowmik, Tazin Rahman, Ananth Kalyanaraman:
  Maptcha: an efficient parallel workflow for hybrid genome scaffolding. BMC Bioinform. 25(1): 263 (2024)
• 
  Dharmesh D. Bhuva, Chin Wee Tan, Ning Liu, Holly J. Whitfield, Nicholas Papachristos, Samuel C. Lee, Malvika Kharbanda, Ahmed Mohamed, Melissa J. Davis:
  vissE: a versatile tool to identify and visualise higher-order molecular phenotypes from functional enrichment analysis. BMC Bioinform. 25(1): 64 (2024)
• 
  Patrick Blumenkamp, Max Pfister, Sonja Diedrich, Karina Brinkrolf, Sebastian Jaenicke, Alexander Goesmann:
  Curare and GenExVis: a versatile toolkit for analyzing and visualizing RNA-Seq data. BMC Bioinform. 25(1): 138 (2024)
• 
  Adusei Bofa, Temesgen Zewotir:
  Optimizing spatio-temporal correlation structures for modeling food security in Africa: a simulation-based investigation. BMC Bioinform. 25(1): 168 (2024)

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