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Publication search results
found 129 matches
- 2020
- Tanveer Ahmad, Nauman Ahmed, Zaid Al-Ars, H. Peter Hofstee:
Optimizing performance of GATK workflows using Apache Arrow In-Memory data framework. BMC Genom. 21(S-10) (2020) - Samuel Briand, Christophe Dessimoz, Nadia El-Mabrouk, Manuel Lafond, Gabriela Lobinska:
A generalized Robinson-Foulds distance for labeled trees. BMC Genom. 21(S-10) (2020) - Ju Hun Choi, Taegun Kim, Junghyun Jung, Jong Wha J. Joo:
Fully automated web-based tool for identifying regulatory hotspots. BMC Genom. 21(S-10) (2020) - Xikang Feng, Lingxi Chen, Zishuai Wang, Shuai Cheng Li:
I-Impute: a self-consistent method to impute single cell RNA sequencing data. BMC Genom. 21(S-10) (2020) - Ah-Jung Jeon, Greg Tucker-Kellogg:
Bivalent genes that undergo transcriptional switching identify networks of key regulators of embryonic stem cell differentiation. BMC Genom. 21(S-10) (2020) - Huiran Li, Yin Guo, Menglan Cai, Limin Li:
MicroRNA-disease association prediction by matrix tri-factorization. BMC Genom. 21(S-10) (2020) - Jiaqi Liu, Jiayin Wang, Xiao Xiao, Xin Lai, Daocheng Dai, Xuanping Zhang, Xiaoyan Zhu, Zhongmeng Zhao, Juan Wang, Zhimin Li:
A hybrid correcting method considering heterozygous variations by a comprehensive probabilistic model. BMC Genom. 21(S-10) (2020) - Yijie Wang, Hyundoo Jeong, Byung-Jun Yoon, Xiaoning Qian:
ClusterM: a scalable algorithm for computational prediction of conserved protein complexes across multiple protein interaction networks. BMC Genom. 21(S-10) (2020) - Xueting Wu, Xuetong Li, Wei Wang, Yuanhong Shan, Cuiting Wang, Mulan Zhu, Qiong La, Yang Zhong, Ye Xu, Peng Nan, Xuan Li:
Integrated metabolomics and transcriptomics study of traditional herb Astragalus membranaceus Bge. var. mongolicus (Bge.) Hsiao reveals global metabolic profile and novel phytochemical ingredients. BMC Genom. 21(S-10) (2020) - 2019
- Ko Abe, Masaaki Hirayama, Kinji Ohno, Teppei Shimamura:
ENIGMA: an enterotype-like unigram mixture model for microbial association analysis. BMC Genom. 20(S2) (2019) - Dongmei Ai, Xiaoxin Li, Hongfei Pan, Jiamin Chen, Jacob A. Cram, Li C. Xia:
Explore mediated co-varying dynamics in microbial community using integrated local similarity and liquid association analysis. BMC Genom. 20(S2) (2019) - Shaokun An, Liang Ma, Lin Wan:
TSEE: an elastic embedding method to visualize the dynamic gene expression patterns of time series single-cell RNA sequencing data. BMC Genom. 20(S2) (2019) - Bipasa Biswas, Yinglei Lai:
A distance-type measure approach to the analysis of copy number variation in DNA sequencing data. BMC Genom. 20(S2) (2019) - Nan Du, Jiao Chen, Yanni Sun:
Improving the sensitivity of long read overlap detection using grouped short k-mer matches. BMC Genom. 20(S2) (2019) - Aldo Guzmán-Sáenz, Niina Haiminen, Saugata Basu, Laxmi Parida:
Signal enrichment with strain-level resolution in metagenomes using topological data analysis. BMC Genom. 20(S2) (2019) - Kui Hua, Xuegong Zhang:
Estimating the total genome length of a metagenomic sample using k-mers. BMC Genom. 20(S2) (2019) - Sungjoon Park, Minsu Kim, Seokjun Seo, Seungwan Hong, Kyoohyung Han, Keewoo Lee, Jung Hee Cheon, Sun Kim:
A secure SNP panel scheme using homomorphically encrypted K-mers without SNP calling on the user side. BMC Genom. 20(S2) (2019) - Wenhao Qian, Ting Ma, Mao Ye, Zhiyao Li, Yuanhua Liu, Pei Hao:
Microbiota in the apical root canal system of tooth with apical periodontitis. BMC Genom. 20(S2) (2019) - Shanshan Ren, Nauman Ahmed, Koen Bertels, Zaid Al-Ars:
GPU accelerated sequence alignment with traceback for GATK HaplotypeCaller. BMC Genom. 20(S2) (2019) - Qi Tian, Jianxiao Zou, Jianxiong Tang, Yuan Fang, Zhongli Yu, Shicai Fan:
MRCNN: a deep learning model for regression of genome-wide DNA methylation. BMC Genom. 20(S2) (2019) - Pengshuo Yang, Shaojun Yu, Lin Cheng, Kang Ning:
Meta-network: optimized species-species network analysis for microbial communities. BMC Genom. 20(S2) (2019) - Qijin Yin, Mengmeng Wu, Qiao Liu, Hairong Lv, Rui Jiang:
DeepHistone: a deep learning approach to predicting histone modifications. BMC Genom. 20(S2) (2019) - Xia Zhang, Yanglan Gan, Guobing Zou, Jihong Guan, Shuigeng Zhou:
Genome-wide analysis of epigenetic dynamics across human developmental stages and tissues. BMC Genom. 20(S2) (2019) - Yanlin Zhang, Weiwei Liu, Yu Lin, Yen Kaow Ng, Shuaicheng Li:
Large-scale 3D chromatin reconstruction from chromosomal contacts. BMC Genom. 20(S2) (2019) - 2018
- Yoann Anselmetti, Wandrille Duchemin, Eric Tannier, Cédric Chauve, Sèverine Bérard:
Phylogenetic signal from rearrangements in 18 Anopheles species by joint scaffolding extant and ancestral genomes. BMC Genom. 19(S2) (2018) - Wen Chen, Xuan Zhang, Jing Li, Shulan Huang, Shuanglin Xiang, Xiang Hu, Changning Liu:
Comprehensive analysis of coding-lncRNA gene co-expression network uncovers conserved functional lncRNAs in zebrafish. BMC Genom. 19(S2) (2018) - Yoonha Choi, Tiffany Ting Liu, Daniel G. Pankratz, Thomas V. Colby, Neil M. Barth, David A. Lynch, P. Sean Walsh, Ganesh Raghu, Giulia C. Kennedy, Jing Huang:
Identification of usual interstitial pneumonia pattern using RNA-Seq and machine learning: challenges and solutions. BMC Genom. 19(S2) (2018) - Chih-Hung Chou, Hsi-Yuan Huang, Wei-Chih Huang, Sheng-Da Hsu, Chung-Der Hsiao, Chia-Yu Liu, Yu-Hung Chen, Yu-Chen Liu, Wei-Yun Huang, Meng-Lin Lee, Yi-Chang Chen, Hsien-Da Huang:
The aquatic animals' transcriptome resource for comparative functional analysis. BMC Genom. 19(S2) (2018) - Chi-Nga Chow, Yi-Fan Chiang-Hsieh, Chia-Hung Chien, Han-Qin Zheng, Tzong-Yi Lee, Nai-Yun Wu, Kuan-Chieh Tseng, Ping-Fu Hou, Wen-Chi Chang:
Delineation of condition specific Cis- and Trans-acting elements in plant promoters under various Endo- and exogenous stimuli. BMC Genom. 19(S2) (2018) - Dan He, Subrata Saha, Richard Finkers, Laxmi Parida:
Efficient algorithms for polyploid haplotype phasing. BMC Genom. 19(S2) (2018)
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