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Publication search results
found 300 matches
- 2005
- David M. Aanensen, Brian G. Spratt:
The multilocus sequence typing network: mlst.net. Nucleic Acids Res. 33(Web-Server-Issue): 728-733 (2005) - Saraswathi Abhiman, Erik L. L. Sonnhammer:
FunShift: a database of function shift analysis on protein subfamilies. Nucleic Acids Res. 33(Database-Issue): 197-200 (2005) - Cei Abreu-Goodger, Enrique Merino:
RibEx: a web server for locating riboswitches and other conserved bacterial regulatory elements. Nucleic Acids Res. 33(Web-Server-Issue): 690-692 (2005) - Sachiyo Aburatani, Kousuke Goto, Shigeru Saito, Hiroyuki Toh, Katsuhisa Horimoto:
ASIAN: a web server for inferring a regulatory network framework from gene expression profiles. Nucleic Acids Res. 33(Web-Server-Issue): 659-664 (2005) - Stein Aerts, Peter Van Loo, Gert Thijs, Herbert Mayer, Rainer de Martin, Yves Moreau, Bart De Moor:
TOUCAN 2: the all-inclusive open source workbench for regulatory sequence analysis. Nucleic Acids Res. 33(Web-Server-Issue): 393-396 (2005) - Fátima Al-Shahrour, Pablo Minguez, Juan M. Vaquerizas, Lucía Conde, Joaquín Dopazo:
BABELOMICS: a suite of web tools for functional annotation and analysis of groups of genes in high-throughput experiments. Nucleic Acids Res. 33(Web-Server-Issue): 460-464 (2005) - C. Alfarano, C. E. Andrade, K. Anthony, N. Bahroos, Martha Bajec, K. Bantoft, Doron Betel, B. Bobechko, K. Boutilier, E. Burgess, K. Buzadzija, R. Cavero, C. D'Abreo, Ian M. Donaldson, D. Dorairajoo, Michel Justin Dumontier, M. R. Dumontier, V. Earles, R. Farrall, Howard J. Feldman, E. Garderman, Y. Gong, R. Gonzaga, V. Grytsan, E. Gryz, V. Gu, E. Haldorsen, A. Halupa, Robin Haw, A. Hrvojic, L. Hurrell, Ruth Isserlin, F. Jack, F. Juma, A. Khan, T. Kon, S. Konopinsky, V. Le, E. Lee, S. Ling, M. Magidin, J. Moniakis, J. Montojo, S. Moore, B. Muskat, I. Ng, J. P. Paraiso, Benjamin D. Parker, Greg Pintilie, R. Pirone, John J. Salama, S. Sgro, T. Shan, Y. Shu, J. Siew, D. Skinner, Kevin A. Snyder, R. Stasiuk, D. Strumpf, Brigitte Tuekam, S. Tao, Z. Wang, M. White, R. Willis, Cheryl Wolting, S. Wong, A. Wrong, C. Xin, R. Yao, B. Yates, Shudong Zhang, K. Zheng, Tony Pawson, B. F. Francis Ouellette, Christopher W. V. Hogue:
The Biomolecular Interaction Network Database and related tools 2005 update. Nucleic Acids Res. 33(Database-Issue): 418-424 (2005) - Can Alkan, Eray Tüzün, Jerome Buard, Franck Lethiec, Evan E. Eichler, Jeffrey A. Bailey, Süleyman Cenk Sahinalp:
Manipulating multiple sequence alignments via MaM and WebMaM. Nucleic Acids Res. 33(Web-Server-Issue): 295-298 (2005) - C. Alland, F. Moreews, D. Boens, Mathilde Carpentier, S. Chiusa, Mathieu Lonquety, N. Renault, Y. Wong, Hubert Cantalloube, Jacques Chomilier, Joëlle Hochez, Joël Pothier, Bruno O. Villoutreix, Jean-François Zagury, Pierre Tufféry:
RPBS: a web resource for structural bioinformatics. Nucleic Acids Res. 33(Web-Server-Issue): 44-49 (2005) - Elena A. Ananko, Nikolay L. Podkolodny, Irina L. Stepanenko, Olga A. Podkolodnaya, D. A. Rasskazov, Denis S. Miginsky, Vitali A. Likhoshvai, Alexander V. Ratushny, N. N. Podkolodnaya, Nikolay A. Kolchanov:
GeneNet in 2005. Nucleic Acids Res. 33(Database-Issue): 425-427 (2005) - P. Ananthalakshmi, Ch. Kiran Kumar, M. Jeyasimhan, K. Sumathi, Krishna Sekar:
Fragment Finder: a web-based software to identify similar three-dimensional structural motif. Nucleic Acids Res. 33(Web-Server-Issue): 85-88 (2005) - Martha B. Arnaud, Maria C. Costanzo, Marek S. Skrzypek, Gail Binkley, Christopher Lane, Stuart R. Miyasato, Gavin Sherlock:
The Candida Genome Database (CGD), a community resource for Candida albicans gene and protein information. Nucleic Acids Res. 33(Database-Issue): 358-363 (2005) - Zeynep Arziman, Thomas Horn, Michael Boutros:
E-RNAi: a web application to design optimized RNAi constructs. Nucleic Acids Res. 33(Web-Server-Issue): 582-588 (2005) - J. L. Ashurst, C.-K. Chen, James G. R. Gilbert, Kerstin Jekosch, Stephen Keenan, Patrick Meidl, Stephen M. J. Searle, Jim Stalker, R. Storey, Stephen J. Trevanion, Laurens G. Wilming, Tim J. P. Hubbard:
The Vertebrate Genome Annotation (Vega) database. Nucleic Acids Res. 33(Database-Issue): 459-465 (2005) - Sébastien Aubourg, Véronique Brunaud, Clémence Bruyère, J. Mark Cock, Richard Cooke, Annick Cottet, Arnaud Couloux, Patrice Déhais, Gilbert Deléage, Aymeric Duclert, Manuel Echeverria, Aimée Eschbach, Denis Falconet, Ghislain Filippi, Christine Gaspin, Christophe Geourjon, Jean-Michel Grienenberger, Guy Houlné, Elisabeth Jamet, Frédéric Lechauve, Olivier Leleu, Philippe Leroy, Régis Mache, Christian Meyer, Hafed Nedjari, Ioan Negrutiu, Valérie Orsini, Eric Peyretaillade, Cyril Pommier, Jeroen Raes, Jean-Loup Risler, Stéphane Rivière, Stephane Rombauts, Pierre Rouzé, Michel Schneider, Philippe Schwob, Ian Small, Ghislain Soumayet-Kampetenga, Darko Stankovski, Claire Toffano, Michael Tognolli, Michel Caboche, Alain Lecharny:
GeneFarm, structural and functional annotation of Arabidopsis gene and protein families by a network of experts. Nucleic Acids Res. 33(Database-Issue): 641-646 (2005) - Gabriele Ausiello, Andreas Zanzoni, Daniele Peluso, Allegra Via, Manuela Helmer-Citterich:
pdbFun: mass selection and fast comparison of annotated PDB residues. Nucleic Acids Res. 33(Web-Server-Issue): 133-137 (2005) - Christina Backes, Jan Küntzer, Hans-Peter Lenhof, Nicole Comtesse, Eckart Meese:
GraBCas: a bioinformatics tool for score-based prediction of Caspase- and Granzyme B-cleavage sites in protein sequences. Nucleic Acids Res. 33(Web-Server-Issue): 208-213 (2005) - Iris Bahir, Michal Linial:
ProTeus: identifying signatures in protein termini. Nucleic Acids Res. 33(Web-Server-Issue): 277-280 (2005) - Amos Bairoch, Rolf Apweiler, Cathy H. Wu, Winona C. Barker, Brigitte Boeckmann, Serenella Ferro, Elisabeth Gasteiger, Hongzhan Huang, Rodrigo Lopez, Michele Magrane, Maria Jesus Martin, Darren A. Natale, Claire O'Donovan, Nicole Redaschi, Lai-Su L. Yeh:
The Universal Protein Resource (UniProt). Nucleic Acids Res. 33(Database-Issue): 154-159 (2005) - Rama Balakrishnan, Karen R. Christie, Maria C. Costanzo, Kara Dolinski, Selina S. Dwight, Stacia R. Engel, Dianna G. Fisk, Jodi E. Hirschman, Eurie L. Hong, Robert S. Nash, Rose Oughtred, Marek S. Skrzypek, Chandra L. Theesfeld, Gail Binkley, Qing Dong, Christopher Lane, Anand Sethuraman, Shuai Weng, David Botstein, J. Michael Cherry:
Fungal BLAST and Model Organism BLASTP Best Hits: new comparison resources at the Saccharomyces Genome Database (SGD). Nucleic Acids Res. 33(Database-Issue): 374-377 (2005) - Catherine A. Ball, Ihab A. B. Awad, Janos Demeter, Jeremy Gollub, Joan M. Hebert, Tina Hernandez-Boussard, Heng Jin, John C. Matese, Michael Nitzberg, Farrell Wymore, Zachariah K. Zachariah, Patrick O. Brown, Gavin Sherlock:
The Stanford Microarray Database accommodates additional microarray platforms and data formats. Nucleic Acids Res. 33(Database-Issue): 580-582 (2005) - Lei Bao, Mi Zhou, Yan Cui:
nsSNPAnalyzer: identifying disease-associated nonsynonymous single nucleotide polymorphisms. Nucleic Acids Res. 33(Web-Server-Issue): 480-482 (2005) - Tanya Barrett, Tugba O. Suzek, Dennis B. Troup, Stephen E. Wilhite, Wing-Chi Ngau, Pierre Ledoux, Dmitry Rudnev, Alex E. Lash, Wataru Fujibuchi, Ron Edgar:
NCBI GEO: mining millions of expression profiles - database and tools. Nucleic Acids Res. 33(Database-Issue): 562-566 (2005) - Endre Barta, Endre Sebestyén, Tamás B. Pálfy, Gábor Tóth, Csaba P. Ortutay, László Patthy:
DoOP: Databases of Orthologous Promoters, collections of clusters of orthologous upstream sequences from chordates and plants. Nucleic Acids Res. 33(Database-Issue): 86-90 (2005) - Alex Bateman:
Editorial. Nucleic Acids Res. 33(Database-Issue): 1 (2005) - Eric Bazin, Laurent Duret, Simon Penel, Nicolas Galtier:
Polymorphix: a sequence polymorphism database. Nucleic Acids Res. 33(Database-Issue): 481-484 (2005) - Dennis A. Benson, Ilene Karsch-Mizrachi, David J. Lipman, James Ostell, David L. Wheeler:
GenBank. Nucleic Acids Res. 33(Database-Issue): 34-38 (2005) - Eugene Berezikov, Victor Guryev, Edwin Cuppen:
CONREAL web server: identification and visualization of conserved transcription factor binding sites. Nucleic Acids Res. 33(Web-Server-Issue): 447-450 (2005) - John Besemer, Mark Borodovsky:
GeneMark: web software for gene finding in prokaryotes, eukaryotes and viruses. Nucleic Acids Res. 33(Web-Server-Issue): 451-454 (2005) - Manoj Bhasin, G. P. S. Raghava:
GPCRsclass: a web tool for the classification of amine type of G-protein-coupled receptors. Nucleic Acids Res. 33(Web-Server-Issue): 143-147 (2005)
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