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Publication search results
found 230 matches
- 2020
- Zhen Fan, Runsheng Chen, Xiaowei Chen:
SpatialDB: a database for spatially resolved transcriptomes. Nucleic Acids Res. 48(Database-Issue): D233-D237 (2020) - James J. Davis, Alice R. Wattam, Ramy K. Aziz, Thomas S. Brettin, Ralph Butler, Rory Butler, Philippe Chlenski, Neal Conrad, Allan Dickerman, Emily M. Dietrich, Joseph L. Gabbard, Svetlana Gerdes, Andrew Guard, Ronald W. Kenyon, Dustin Machi, Chunhong Mao, Daniel E. Murphy-Olson, Marcus Nguyen, Eric K. Nordberg, Gary J. Olsen, Robert Olson, Jamie C. Overbeek, Ross A. Overbeek, Bruce D. Parrello, Gordon D. Pusch, Maulik Shukla, Chris Thomas, Margo VanOeffelen, Veronika Vonstein, Andrew S. Warren, Fangfang Xia, Dawen Xie, Hyun Seung Yoo, Rick Stevens:
The PATRIC Bioinformatics Resource Center: expanding data and analysis capabilities. Nucleic Acids Res. 48(Database-Issue): D606-D612 (2020) - Feng Tian, Dechang Yang, Yuqi Meng, Jinpu Jin, Ge Gao:
PlantRegMap: charting functional regulatory maps in plants. Nucleic Acids Res. 48(Database-Issue): D1104-D1113 (2020) - Liang Cheng, Changlu Qi, He Zhuang, Tongze Fu, Xue Zhang:
gutMDisorder: a comprehensive database for dysbiosis of the gut microbiota in disorders and interventions. Nucleic Acids Res. 48(Database-Issue): D554-D560 (2020) - Hui Liu, Wenhao Zhang, Bo Zou, Jinxian Wang, Yuanyuan Deng, Lei Deng:
DrugCombDB: a comprehensive database of drug combinations toward the discovery of combinatorial therapy. Nucleic Acids Res. 48(Database-Issue): D871-D881 (2020) - Peng Wang, Xin Li, Yue Gao, Qiuyan Guo, Shangwei Ning, Yunpeng Zhang, Shipeng Shang, Junwei Wang, Yanxia Wang, Hui Zhi, Ying Fang, Weitao Shen, Guangmei Zhang, Steven Xi Chen, Xia Li:
LnCeVar: a comprehensive database of genomic variations that disturb ceRNA network regulation. Nucleic Acids Res. 48(Database-Issue): D111-D117 (2020) - Julie Agapite, Laurent-Philippe Albou, Suzi A. Aleksander, Joanna Argasinska, Valerio Arnaboldi, Helen Attrill, Susan M. Bello, Judith A. Blake, Olin Blodgett, Yvonne M. Bradford, Carol J. Bult, Scott Cain, Brian R. Calvi, Seth Carbon, Juancarlos Chan, Wen J. Chen, J. Michael Cherry, Jae-Hyoung Cho, Karen R. Christie, Madeline A. Crosby, Jeff de Pons, Mary E. Dolan, Gilberto dos Santos, Barbara Dunn, Nathan A. Dunn, Anne E. Eagle, Dustin Ebert, Stacia R. Engel, David Fashena, Ken Frazer, Sibyl Gao, Felix Gondwe, Joshua L. Goodman, L. Sian Gramates, Christian A. Grove, Todd W. Harris, Marie-Claire Harrison, Douglas G. Howe, Kevin L. Howe, Sagar Jha, James A. Kadin, Thomas C. Kaufman, Patrick Kalita, Kalpana Karra, Ranjana Kishore, Stanley J. F. Laulederkind, Raymond Y. N. Lee, Kevin A. MacPherson, Steven J. Marygold, Beverley Matthews, Gillian H. Millburn, Stuart R. Miyasato, Sierra A. T. Moxon, Hans-Michael Müller, Christopher J. Mungall, Anushya Muruganujan, Tremayne Mushayahama, Robert S. Nash, Patrick Ng, Michael Paulini, Norbert Perrimon, Christian Pich, Daniela Raciti, Joel E. Richardson, Matthew Russell, Susan Russo Gelbart, Leyla Ruzicka, Kevin Schaper, Mary Shimoyama, Matt Simison, Cynthia L. Smith, David R. Shaw, Ajay Shrivatsav, Marek S. Skrzypek, Jennifer R. Smith, Paul W. Sternberg, Christopher J. Tabone, Paul D. Thomas, Jyothi Thota, Sabrina Toro, Monika Tomczuk, Marek Tutaj, Monika Tutaj, Jose-Maria Urbano, Kimberly Van Auken, Ceri E. Van Slyke, Shur-Jen Wang, Shuai Weng, Monte Westerfield, Gary Williams, Edith D. Wong, Adam Wright, Karen Yook:
Alliance of Genome Resources Portal: unified model organism research platform. Nucleic Acids Res. 48(Database-Issue): D650-D658 (2020) - Brian P. Alcock, Amogelang R. Raphenya, Tammy T. Y. Lau, Kara K. Tsang, Mégane Bouchard, Arman Edalatmand, William Huynh, Anna-Lisa V. Nguyen, Annie A. Cheng, Sihan Liu, Sally Y. Min, Anatoly Miroshnichenko, Hiu-Ki Tran, Rafik E. Werfalli, Jalees A. Nasir, Martins Oloni, David J. Speicher, Alexandra Florescu, Bhavya Singh, Mateusz Faltyn, Anastasia Hernández-Koutoucheva, Arjun N. Sharma, Emily Bordeleau, Andrew C. Pawlowski, Haley L. Zubyk, Damion M. Dooley, Emma J. Griffiths, Finlay Maguire, Geoffrey L. Winsor, Robert G. Beiko, Fiona S. L. Brinkman, William W. L. Hsiao, Gary H. Van Domselaar, Andrew G. McArthur:
CARD 2020: antibiotic resistome surveillance with the comprehensive antibiotic resistance database. Nucleic Acids Res. 48(Database-Issue): D517-D525 (2020) - Fabrice Allain, Fabien Mareuil, Hervé Ménager, Michael Nilges, Benjamin Bardiaux:
ARIAweb: a server for automated NMR structure calculation. Nucleic Acids Res. 48(Webserver-Issue): W41-W47 (2020) - Adrian M. Altenhoff, Javier Garrayo-Ventas, Salvatore Cosentino, David Emms, Natasha M. Glover, Ana Hernández-Plaza, Yannis Nevers, Vicky Sundesha, Damian Szklarczyk, José María Fernández, Laia Codó, The Quest for Orthologs Consortium, Josep Lluis Gelpí, Jaime Huerta-Cepas, Wataru Iwasaki, Steven Kelly, Odile Lecompte, Matthieu Muffato, Maria Jesus Martin, Salvador Capella-Gutiérrez, Paul D. Thomas, Erik L. L. Sonnhammer, Christophe Dessimoz:
The Quest for Orthologs benchmark service and consensus calls in 2020. Nucleic Acids Res. 48(Webserver-Issue): W538-W545 (2020) - Luís Q. Alves, Raquel Ruivo, Miguel M. Fonseca, Mónica Lopes-Marques, Pedro Ribeiro, Luís Filipe Castro:
PseudoChecker: an integrated online platform for gene inactivation inference. Nucleic Acids Res. 48(Webserver-Issue): W321-W331 (2020) - Clara Amid, Blaise T. F. Alako, Vishnukumar Balavenkataraman Kadhirvelu, Tony Burdett, Josephine Burgin, Jun Fan, Peter W. Harrison, Sam Holt, Abdulrahman Hussein, Eugene Ivanov, Suran Jayathilaka, Simon Kay, Thomas M. Keane, Rasko Leinonen, Xin Liu, Josué Martínez-Villacorta, Annalisa Milano, Amir Pakseresht, Nadim Rahman, Jeena Rajan, Kethi Reddy, Edward Richards, Dmitriy Smirnov, Alexey Sokolov, Senthilnathan Vijayaraja, Guy Cochrane:
The European Nucleotide Archive in 2019. Nucleic Acids Res. 48(Database-Issue): D70-D76 (2020) - Antonina Andreeva, Eugene Kulesha, Julian Gough, Alexey G. Murzin:
The SCOP database in 2020: expanded classification of representative family and superfamily domains of known protein structures. Nucleic Acids Res. 48(Database-Issue): D376-D382 (2020) - Ernesto Aparicio-Puerta, Cristina Gómez-Martín, Stavros Giannoukakos, José María Medina, Juan Antonio Marchal, Michael Hackenberg:
mirnaQC: a webserver for comparative quality control of miRNA-seq data. Nucleic Acids Res. 48(Webserver-Issue): W262-W267 (2020) - David R. Armstrong, John M. Berrisford, Matthew J. Conroy, Aleksandras Gutmanas, Stephen Anyango, Preeti Choudhary, Alice R. Clark, Jose M. Dana, Mandar S. Deshpande, Roisin Dunlop, Paul J. Gane, Romana Gáborová, Deepti Gupta, Pauline Haslam, Jaroslav Koca, Lora Mak, Saqib Mir, Abhik Mukhopadhyay, Nurul Nadzirin, Sreenath Nair, Typhaine Paysan-Lafosse, Lukás Pravda, David Sehnal, Osman Salih, Oliver S. Smart, James Tolchard, Mihaly Varadi, Radka Svobodová Vareková, Hossam Zaki, Gerard J. Kleywegt, Sameer Velankar:
PDBe: improved findability of macromolecular structure data in the PDB. Nucleic Acids Res. 48(Database-Issue): D335-D343 (2020) - Jane F. Armstrong, Elena Faccenda, Simon D. Harding, Adam J. Pawson, Christopher Southan, Joanna L. Sharman, Brice Campo, David R. Cavanagh, Stephen P. H. Alexander, Anthony P. Davenport, Michael Spedding, Jamie A. Davies, NC-IUPHAR:
The IUPHAR/BPS Guide to PHARMACOLOGY in 2020: extending immunopharmacology content and introducing the IUPHAR/MMV Guide to MALARIA PHARMACOLOGY. Nucleic Acids Res. 48(Database-Issue): D1006-D1021 (2020) - Olivier Arnaiz, Eric Meyer, Linda Sperling:
ParameciumDB 2019: integrating genomic data across the genus for functional and evolutionary biology. Nucleic Acids Res. 48(Database-Issue): D599-D605 (2020) - Akshay Kumar Avvaru, Deepak Sharma, Archana Verma, Rakesh K. Mishra, Divya Tej Sowpati:
MSDB: a comprehensive, annotated database of microsatellites. Nucleic Acids Res. 48(Database-Issue): D155-D159 (2020) - Dmitry V. Bagaev, Renske M. A. Vroomans, Jerome Samir, Ulrik Stervbo, Cristina Rius, Garry Dolton, Alexander Greenshields-Watson, Meriem Attaf, Evgeny S. Egorov, Ivan V. Zvyagin, Nina Babel, David K. Cole, Andrew J. Godkin, Andrew K. Sewell, Can Kesmir, Dmitry M. Chudakov, Fabio Luciani, Mikhail Shugay:
VDJdb in 2019: database extension, new analysis infrastructure and a T-cell receptor motif compendium. Nucleic Acids Res. 48(Database-Issue): D1057-D1062 (2020) - Xuefeng Bai, Shanshan Shi, Bo Ai, Yong Jiang, Yuejuan Liu, Xiaole Han, Mingcong Xu, Qi Pan, Fan Wang, Qiuyu Wang, Jian Zhang, Xuecang Li, Chenchen Feng, Yanyu Li, Yuezhu Wang, Yiwei Song, Ke Feng, Chunquan Li:
ENdb: a manually curated database of experimentally supported enhancers for human and mouse. Nucleic Acids Res. 48(Database-Issue): D51-D57 (2020) - Deepak Balamurali, Alessandro Gorohovski, Rajesh Detroja, Vikrant Palande, Dorith Raviv-Shay, Milana Frenkel-Morgenstern:
ChiTaRS 5.0: the comprehensive database of chimeric transcripts matched with druggable fusions and 3D chromatin maps. Nucleic Acids Res. 48(Database-Issue): D825-D834 (2020) - Priyanka Banerjee, Mathias Dunkel, Emanuel Kemmler, Robert Preissner:
SuperCYPsPred - a web server for the prediction of cytochrome activity. Nucleic Acids Res. 48(Webserver-Issue): W580-W585 (2020) - Kristian Barrett, Cameron J. Hunt, Lene Lange, Anne S. Meyer:
Conserved unique peptide patterns (CUPP) online platform: peptide-based functional annotation of carbohydrate active enzymes. Nucleic Acids Res. 48(Webserver-Issue): W110-W115 (2020) - Nina Baumgarten, Dennis Hecker, Sivarajan Karunanithi, Florian Schmidt, Markus List, Marcel H. Schulz:
EpiRegio: analysis and retrieval of regulatory elements linked to genes. Nucleic Acids Res. 48(Webserver-Issue): W193-W199 (2020) - Tim Beck, Tom Shorter, Anthony J. Brookes:
GWAS Central: a comprehensive resource for the discovery and comparison of genotype and phenotype data from genome-wide association studies. Nucleic Acids Res. 48(Database-Issue): D933-D940 (2020) - Molly A. Bogue, Vivek M. Philip, David O. Walton, Stephen C. Grubb, Matthew H. Dunn, Georgi Kolishovski, Jake Emerson, Gaurab Mukherjee, Tim Stearns, Hao He, Vinita Sinha, Beena Kadakkuzha, Kunde Ramamoorthy Govindarajan, Elissa J. Chesler:
Mouse Phenome Database: a data repository and analysis suite for curated primary mouse phenotype data. Nucleic Acids Res. 48(Database-Issue): D716-D723 (2020) - Alexandre Borrel, Scott S. Auerbach, Keith A. Houck, Nicole C. Kleinstreuer:
Tox21BodyMap: a webtool to map chemical effects on the human body. Nucleic Acids Res. 48(Webserver-Issue): W472-W476 (2020) - Alexandre Borrel, Kamel Mansouri, Sue Nolte, Trey Saddler, Mike Conway, Charles Schmitt, Nicole C. Kleinstreuer:
InterPred: a webtool to predict chemical autofluorescence and luminescence interference. Nucleic Acids Res. 48(Webserver-Issue): W586-W590 (2020) - Philia Bouchard-Bourelle, Clément Desjardins-Henri, Darren Mathurin-St-Pierre, Gabrielle Deschamps-Francoeur, Étienne Fafard-Couture, Jean-Michel Garant, Sherif Abou Elela, Michelle S. Scott:
snoDB: an interactive database of human snoRNA sequences, abundance and interactions. Nucleic Acids Res. 48(Database-Issue): D220-D225 (2020) - Louis Philip Benoit Bouvrette, Samantha Bovaird, Mathieu Blanchette, Eric Lécuyer:
oRNAment: a database of putative RNA binding protein target sites in the transcriptomes of model species. Nucleic Acids Res. 48(Database-Issue): D166-D173 (2020)
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