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Journal of Biomedical Semantics, Volume 14
Volume 14, Number 1, December 2023
- Antonio José Jimeno-Yepes, Karin Verspoor:
Classifying literature mentions of biological pathogens as experimentally studied using natural language processing. 1 - Leonardo Campillos Llanos
:
MedLexSp - a medical lexicon for Spanish medical natural language processing. 2 - Lauren E. Chan, Anne E. Thessen, William D. Duncan, Nicolas Matentzoglu
, Charles Schmitt, Cynthia J. Grondin, Nicole A. Vasilevsky, Julie A. McMurry, Peter N. Robinson, Christopher J. Mungall, Melissa A. Haendel:
The Environmental Conditions, Treatments, and Exposures Ontology (ECTO): connecting toxicology and exposure to human health and beyond. 3 - Enayat Rajabi, Rishi Midha, Jairo Francisco de Souza:
Constructing a knowledge graph for open government data: the case of Nova Scotia disease datasets. 4 - Weixin Xie, Kunjie Fan, Shijun Zhang, Lang Li:
Multiple sampling schemes and deep learning improve active learning performance in drug-drug interaction information retrieval analysis from the literature. 5 - Fuqi Xu
, Nick S. Juty, Carole A. Goble, Simon Jupp, Helen E. Parkinson
, Mélanie Courtot
:
Features of a FAIR vocabulary. 6 - Alban Gaignard
, Thomas Rosnet
, Frédéric de Lamotte
, Vincent Lefort
, Marie-Dominique Devignes
:
FAIR-Checker: supporting digital resource findability and reuse with Knowledge Graphs and Semantic Web standards. 7 - Oshani Seneviratne
, Amar K. Das, Shruthi Chari
, Nkechinyere N. Agu, Sabbir M. Rashid, Jamie P. McCusker, Jade S. Franklin, Miao Qi, Kristin P. Bennett, Ching-Hua Chen, James A. Hendler, Deborah L. McGuinness:
Semantically enabling clinical decision support recommendations. 8 - Sarah M. Alghamdi
, Robert Hoehndorf
:
Improving the classification of cardinality phenotypes using collections. 9 - Steve Penn, Jane Lomax
, Anneli Karlsson
, Vincent Antonucci, Carl-Dieter Zachmann, Samantha Kanza
, Stephan C. Schürer
, John Turner:
An extension of the BioAssay Ontology to include pharmacokinetic/pharmacodynamic terminology for the enrichment of scientific workflows. 10 - Susana Nunes, Rita Torres Sousa, Catia Pesquita:
Multi-domain knowledge graph embeddings for gene-disease association prediction. 11 - Maryam Basereh, Annalina Caputo, Rob Brennan
:
Automatic transparency evaluation for open knowledge extraction systems. 12 - Mariana L. Neves, Antonina Klippert, Fanny Knöspel, Juliane Rudeck, Ailine Stolz, Zsofia Ban, Markus Becker, Kai Diederich, Barbara Grune, Pia Kahnau, Nils Ohnesorge, Johannes Pucher, Gilbert Schönfelder
, Bettina Bert, Daniel Butzke:
Automatic classification of experimental models in biomedical literature to support searching for alternative methods to animal experiments. 13 - Cilia E. Zayas, Justin M. Whorton, Kevin W. Sexton
, Charles D. Mabry, S. Clint Dowland
, Mathias Brochhausen:
Development and validation of the early warning system scores ontology. 14 - Victor Eiti Yamamoto
, Juliana Medeiros Destro
, Júlio Cesar dos Reis:
Context-based refinement of mappings in evolving life science ontologies. 16 - Elli Papadopoulou
, Alessia Bardi
, George Kakaletris
, Diamadis Tziotzios
, Paolo Manghi
, Natalia Manola
:
Data management plans as linked open data: exploiting ARGOS FAIR and machine actionable outputs in the OpenAIRE research graph. 17 - Gollam Rabby, Jennifer D'Souza, Allard Oelen, Lucie Dvorackova, Vojtech Svátek, Sören Auer:
Impact of COVID-19 research: a study on predicting influential scholarly documents using machine learning and a domain-independent knowledge graph. 18 - Shuxin Zhang
, Nirupama Benis, Ronald Cornet:
Assessing resolvability, parsability, and consistency of RDF resources: a use case in rare diseases. 19 - Daniel Daza
, Dimitrios Alivanistos, Payal Mitra, Thom Pijnenburg, Michael Cochez
, Paul Groth
:
BioBLP: a modular framework for learning on multimodal biomedical knowledge graphs. 20 - César Henrique Bernabé
, Núria Queralt-Rosinach, Vítor E. Silva Souza, Luiz Olavo Bonino da Silva Santos, Barend Mons, Annika Jacobsen, Marco Roos:
The use of foundational ontologies in biomedical research. 21
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