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ORCIDBarend Mons
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- affiliation: Leiden University Medical Center, The Netherlands
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2020 – today
- 2024
[j30]Esther R. C. Janssen, Ilona M. Punt, Johan van Soest
, Yvonne F. Heerkens, Hillegonda A. Stallinga, Huib ten Napel, Lodewijk W. van Rhijn, Barend Mons, Andre Dekker, Paul C. Willems, Nico L. U. van Meeteren:
Operationalizing and digitizing person-centered daily functioning: a case for functionomics. BMC Medical Informatics Decis. Mak. 24(1): 184 (2024)- [i6]Yu-Ning Huang, Michael I. Love, Cynthia Flaire Ronkowski, Dhrithi Deshpande, Lynn M. Schriml, Annie Wong-Beringer, Barend Mons, Russell Corbett-Detig, Christopher I Hunter, Jason H. Moore, Lana X. Garmire, T. B. K. Reddy, Winston A. Hide, Atul J. Butte, Mark D. Robinson, Serghei Mangul:
Perceptual and technical barriers in sharing and formatting metadata accompanying omics studies. CoRR abs/2401.02965 (2024) - 2023
- [j29]César Henrique Bernabé, Núria Queralt-Rosinach, Vítor E. Silva Souza, Luiz Olavo Bonino da Silva Santos, Barend Mons, Annika Jacobsen, Marco Roos:
The use of foundational ontologies in biomedical research. J. Biomed. Semant. 14(1): 21 (2023) - [c21]César Henrique Bernabé, Tiago Prince Sales, Erik Schultes, Niek van Ulzen, Annika Jacobsen, Luiz Olavo Bonino da Silva Santos, Barend Mons, Marco Roos:
A goal-oriented method for FAIRification planning. ER (Companion) 2023 - 2022
- [j28]Núria Queralt-Rosinach, Rajaram Kaliyaperumal, César Henrique Bernabé, Qinqin Long, Simone A. Joosten, Henk Jan van der Wijk, Erik Flikkenschild, Kees Burger, Annika Jacobsen, Barend Mons, Marco Roos:
Applying the FAIR principles to data in a hospital: challenges and opportunities in a pandemic. J. Biomed. Semant. 13(1): 12 (2022) - [j27]Mirjam van Reisen, Barend Mons:
Introduction to the Special Issue: Data Intelligence on Patient Health Records. Data Intell. 4(4): 671-672 (2022) - [j26]Erik Schultes, Marco Roos, Luiz Olavo Bonino da Silva Santos, Giancarlo Guizzardi, Jildau Bouwman, Thomas Hankemeier, Arie Baak, Barend Mons:
FAIR Digital Twins for Data-Intensive Research. Frontiers Big Data 5: 883341 (2022) - [c20]César Henrique Bernabé, Núria Queralt-Rosinach, Vítor E. Silva Souza, Luiz Olavo Bonino da Silva Santos, Annika Jacobsen, Barend Mons, Marco Roos:
The Use of Foundational Ontologies in Bioinformatics. SWAT4HCLS 2022: 34-43 - [i5]Philip E. Bourne, Vivien Bonazzi, Amy Brand, Bonnie Carroll, Ian T. Foster, Ramanathan V. Guha, Robert J. Hanisch, Sallie Ann Keller, Mary Lee Kennedy, Christine R. Kirkpatrick, Barend Mons, Sarah M. Nusser, Michael Stebbins, George O. Strawn, Alex Szalay:
Playing catch-up in building an open research commons. CoRR abs/2208.04682 (2022) - 2021
- [j25]Barend Mons:
Comments to Jean-Claude Burgelman's article Politics and Open Science: How the European Open Science Cloud Became Reality (the Untold Story) - "EOSC is a bigger ME" and the Dunning Kruger effect. Data Intell. 3(1): 32-39 (2021) - 2020
- [j24]Barend Mons, Erik Schultes, Fenghong Liu, Annika Jacobsen:
The FAIR Principles: First Generation Implementation Choices and Challenges. Data Intell. 2(1-2): 1-9 (2020) - [j23]Annika Jacobsen, Ricardo de Miranda Azevedo, Nick S. Juty, Dominique Batista, Simon J. Coles, Ronald Cornet, Mélanie Courtot, Mercè Crosas, Michel Dumontier, Chris T. A. Evelo, Carole A. Goble, Giancarlo Guizzardi, Karsten Kryger Hansen, Ali Hasnain, Kristina M. Hettne, Jaap Heringa, Rob W. W. Hooft, Melanie Imming, Keith G. Jeffery, Rajaram Kaliyaperumal, Martijn G. Kersloot, Christine R. Kirkpatrick, Tobias Kuhn, Ignasi Labastida, Barbara Magagna, Peter McQuilton, Natalie Meyers, Annalisa Montesanti, Mirjam van Reisen, Philippe Rocca-Serra, Robert Pergl, Susanna-Assunta Sansone, Luiz Olavo Bonino da Silva Santos, Juliane Schneider, George O. Strawn, Mark Thompson, Andra Waagmeester, Tobias Weigel, Mark D. Wilkinson, Egon L. Willighagen, Peter Wittenburg, Marco Roos, Barend Mons, Erik Schultes:
FAIR Principles: Interpretations and Implementation Considerations. Data Intell. 2(1-2): 10-29 (2020) - [j22]Annika Jacobsen, Rajaram Kaliyaperumal, Luiz Olavo Bonino da Silva Santos, Barend Mons, Erik Schultes, Marco Roos, Mark Thompson:
A Generic Workflow for the Data FAIRification Process. Data Intell. 2(1-2): 56-65 (2020) - [j21]Mirjam van Reisen, Mia Stokmans, Mariam Basajja, Antony Otieno Ong'ayo, Christine R. Kirkpatrick, Barend Mons:
Towards the Tipping Point for FAIR Implementation. Data Intell. 2(1-2): 264-275 (2020) - [c19]Núria Queralt Rosinach, Rajaram Kaliyaperumal, César Henrique Bernabé, Qinqin Long, Henk Jan van der Wijk, Barend Mons, Marco Roos:
FAIR Data Management to Access Patient Data. DaMaLOS 2020: 1-10
2010 – 2019
- 2019
- [j20]Celia W. G. van Gelder, Rob W. W. Hooft, Merlijn N. van Rijswijk, Linda van den Berg, Ruben G. Kok, Marcel J. T. Reinders, Barend Mons, Jaap Heringa:
Bioinformatics in the Netherlands: the value of a nationwide community. Briefings Bioinform. 20(2): 540-550 (2019) - [j19]James A. Hendler, Ying Ding, Barend Mons:
A Journal for Human and Machine. Data Intell. 1(1): 1-5 (2019) - [j18]Barend Mons:
FAIR Science for Social Machines: Let's Share Metadata Knowlets in the Internet of FAIR Data and Services. Data Intell. 1(1): 22-42 (2019) - 2018
- [j17]Celia W. G. van Gelder, Rob W. W. Hooft, Merlijn N. van Rijswijk, Linda van den Berg, Ruben G. Kok, Marcel J. T. Reinders, Barend Mons, Jaap Heringa:
Bioinformatics in the Netherlands: the value of a nationwide community. Briefings Bioinform. 19(2): 359 (2018) - [c18]Erik A. Schultes, George O. Strawn, Barend Mons:
Ready, Set, GO FAIR: Accelerating Convergence to an Internet of FAIR Data and Services. DAMDID/RCDL 2018: 19-23 - 2017
- [j16]Barend Mons, Cameron Neylon, Jan Velterop, Michel Dumontier, Luiz Olavo Bonino da Silva Santos, Mark D. Wilkinson:
Cloudy, increasingly FAIR; revisiting the FAIR Data guiding principles for the European Open Science Cloud. Inf. Serv. Use 37(1): 49-56 (2017) - [c17]Mark Thompson, Luiz Olavo Bonino da Silva Santos, Kees Burger, Rajaram Kaliyaperumal, Erik A. Schultes, Annika Jacobsen, Claudio Carta, Richard Finkers, David van Enckevort, Mascha Jansen, Barend Mons, Marco Roos:
Overview of a Suite of Tools and Training Material for Implementing FAIR Data Principles. SWAT4LS 2017 - 2015
- [j15]Eleni Mina, Mark Thompson, Rajaram Kaliyaperumal, Jun Zhao, Eelke van der Horst, Zuotian Tatum, Kristina M. Hettne, Erik A. Schultes, Barend Mons, Marco Roos:
Nanopublications for exposing experimental data in the life-sciences: a Huntington's Disease case study. J. Biomed. Semant. 6: 5 (2015) - [j14]Christine Chichester, Oliver Karch, Pascale Gaudet, Lydie Lane, Barend Mons, Amos Bairoch:
Converting neXtProt into Linked Data and nanopublications. Semantic Web 6(2): 147-153 (2015) - [c16]Eleni Mina, Mark Thompson, Kristina M. Hettne, Willeke M. C. van Roon-Mom, Rajaram Kaliyaperumal, Eelke van der Horst, Katherine Wolstencroft, Barend Mons, Marco Roos:
Multidisciplinary Collaboration to Facilitate Hypotheses Generation in Huntington's Disease. e-Science 2015: 118-125 - [c15]Eelke van der Horst, Rajaram Kaliyaperumal, Zuotian Tatum, Mark Thompson, Erik A. Schultes, Eleni Mina, Ivo Fokkema, Johan T. den Dunnen, Marco Roos, Jeroen F. J. Laros, Barend Mons, Kristina M. Hettne, Peter A. C. 't Hoen:
Finding Novel Associations Across Domains Using Linked Data: a Case Study on Genetic Variants Disrupting Transcription Start Sites. SWAT4LS 2015: 2-12 - 2014
- [j13]Marco Masseroli, Barend Mons, Erik Bongcam-Rudloff, Stefano Ceri, Alexander E. Kel, François Rechenmann, Frédérique Lisacek, Paolo Romano:
Integrated Bio-Search: challenges and trends for the integration, search and comprehensive processing of biological information. BMC Bioinform. 15(S-1): S2 (2014) - [j12]Christine Chichester, Pascale Gaudet, Oliver Karch, Paul Groth, Lydie Lane, Amos Bairoch, Barend Mons, Antonis Loizou:
Querying neXtProt nanopublications and their value for insights on sequence variants and tissue expression. J. Web Semant. 29: 3-11 (2014) - [c14]Marco Roos, Alasdair J. G. Gray, Andra Waagmeester, Mark Thompson, Rajaram Kaliyaperumal, Eelke van der Horst, Barend Mons, Mark D. Wilkinson:
Bring Your Own Data Workshops: A Mechanism to Aid Data Owners to Comply with Linked Data Best Practices. SWAT4LS 2014 - [i4]Kristina M. Hettne, Reinout van Schouwen, Eleni Mina, Eelke van der Horst, Mark Thompson, Rajaram Kaliyaperumal, Barend Mons, Erik M. van Mulligen, Jan A. Kors, Marco Roos:
Explain your data by Concept Profile Analysis Web Services. F1000Research 3: 173 (2014) - 2012
- [c13]Andrew P. Gibson, Jesse C. J. van Dam, Erik A. Schultes, Marco Roos, Barend Mons:
Towards Computational Evaluation of Evidence for Scientific Assertions with Nanopublications. SWAT4LS 2012 - [i3]Frank van Harmelen, George Kampis, Katy Börner, Peter van den Besselaar, Erik A. Schultes, Carole A. Goble, Paul Groth, Barend Mons, Stuart Anderson, Stefan Decker, Conor Hayes, Thierry Buecheler, Dirk Helbing:
Theoretical And Technological Building Blocks For An Innovation Accelerator. CoRR abs/1210.1480 (2012) - [i2]Mark Thompson, Erik A. Schultes, Marco Roos, Barend Mons:
Data Publishing Using Nanopublications. Tiny Trans. Comput. Sci. 1 (2012) - 2011
- [c12]Christine Chichester, Kees Burger, Hailiang Mei, Barend Mons:
Supporting nanopublication provenance: PMID2DOI converter. SWAT4LS 2011: 3 - 2010
- [c11]Paul Boekschoten, Kees Burger, Barend Mons, Christine Chichester:
Import of ENZYME Data into the ConceptWiki and its Representation as RDF. SWAT4LS 2010 - [i1]Paul Boekschoten, Kees Burger, Barend Mons, Christine Chichester:
Import of ENZYME data into the ConceptWiki and its representation as RDF. CoRR abs/1012.1652 (2010)
2000 – 2009
- 2008
- [j11]Rob Jelier, Peter A. C. 't Hoen, Ellen Sterrenburg, Johan T. den Dunnen, Gert-Jan B. van Ommen, Jan A. Kors, Barend Mons:
Literature-aided meta-analysis of microarray data: a compendium study on muscle development and disease. BMC Bioinform. 9 (2008) - 2007
- [j10]Rob Jelier, Guido Jenster, Lambert C. J. Dorssers, Bas J. Wouters, Peter J. M. Hendriksen, Barend Mons, Ruud Delwel, Jan A. Kors:
Text-derived concept profiles support assessment of DNA microarray data for acute myeloid leukemia and for androgen receptor stimulation. BMC Bioinform. 8 (2007) - [j9]Martijn J. Schuemie, Barend Mons, Marc Weeber, Jan A. Kors:
Evaluation of techniques for increasing recall in a dictionary approach to gene and protein name identification. J. Biomed. Informatics 40(3): 316-324 (2007) - 2006
- [j8]Jan H. van Bemmel, Erik M. van Mulligen, Barend Mons, Mark A. van Wijk, Jan A. Kors, Johan van der Lei:
Databases for knowledge discovery: Examples from biomedicine and health care. Int. J. Medical Informatics 75(3-4): 257-267 (2006) - [c10]Erik M. van Mulligen, Erik Möller, Peter-Jan Roes, Marc Weeber, Gerard Meijssen, Barend Mons:
An Online Ontology: WiktionaryZ. KR-MED 2006 - 2005
- [j7]Marc Weeber, Jan A. Kors, Barend Mons:
Online tools to support literature-based discovery in the life sciences. Briefings Bioinform. 6(3): 277-286 (2005) - [j6]Rob Jelier, Guido Jenster, Lambert C. J. Dorssers, C. Christiaan van der Eijk, Erik M. van Mulligen, Barend Mons, Jan A. Kors:
Co-occurrence based meta-analysis of scientific texts: retrieving biological relationships between genes. Bioinform. 21(9): 2049-2058 (2005) - [j5]Barend Mons:
Which gene did you mean? BMC Bioinform. 6: 142 (2005) - [j4]Bob J. A. Schijvenaars, Barend Mons, Marc Weeber, Martijn J. Schuemie, Erik M. van Mulligen, Hester M. Wain, Jan A. Kors:
Thesaurus-based disambiguation of gene symbols. BMC Bioinform. 6: 149 (2005) - [j3]Martijn J. Schuemie, Jan A. Kors, Barend Mons:
Word Sense Disambiguation in the Biomedical Domain: An Overview. J. Comput. Biol. 12(5): 554-565 (2005) - [c9]Bob J. A. Schijvenaars, Martijn J. Schuemie, Erik M. van Mulligen, Marc Weeber, Rob Jelier, Barend Mons, Jan A. Kors, Wessel Kraaij:
TREC 2005 Genomics Track A Concept-Based Approach to Text Categorization. TREC 2005 - 2004
- [j2]Martijn J. Schuemie, Marc Weeber, Bob J. A. Schijvenaars, Erik M. van Mulligen, C. Christiaan van der Eijk, Rob Jelier, Barend Mons, Jan A. Kors:
Distribution of information in biomedical abstracts and full-text publications. Bioinform. 20(16): 2597-2604 (2004) - [j1]C. Christiaan van der Eijk, Erik M. van Mulligen, Jan A. Kors, Barend Mons, Jan van den Berg:
Constructing an associative concept space for literature-based discovery. J. Assoc. Inf. Sci. Technol. 55(5): 436-444 (2004) - [c8]Erik M. van Mulligen, Mario Diwersy, Bob J. A. Schijvenaars, Marc Weeber, C. Christiaan van der Eijk, Rob Jelier, Martijn J. Schuemie, Jan A. Kors, Barend Mons:
Contextual Annotation of Web Pages for Interactive Browsing. MedInfo 2004: 94-98 - 2003
- [c7]Rob Jelier, Guido Jenster, Lambert C. J. Dorssers, Erik M. van Mulligen, Barend Mons, Jan A. Kors:
Mining Microarray Datasets Aided by Knowledge Stored in Literature. AMIA 2003 - [c6]Bob J. A. Schijvenaars, Erik M. van Mulligen, Mario Diwersy, Marc Weeber, C. Christiaan van der Eijk, Rob Jelier, Jan A. Kors, Barend Mons:
Using Contextual Queries. AMIA 2003 - [c5]Marc Weeber, Bob J. A. Schijvenaars, Erik M. van Mulligen, Barend Mons, Rob Jelier, C. Christiaan van der Eijk, Jan A. Kors:
Ambiguity of Human Gene Symbols in LocusLink and MEDLINE: Creating an Inventory and a Disambiguation Test Collection. AMIA 2003 - [c4]Rob Jelier, Martijn J. Schuemie, C. Christiaan van der Eijk, Marc Weeber, Erik M. van Mulligen, Bob J. A. Schijvenaars, Barend Mons, Jan A. Kors:
Searching for geneRIFs: Concept-Based Query Expansion and Bayes Classification. TREC 2003: 225-233 - 2002
- [c3]Erik M. van Mulligen, C. Christiaan van der Eijk, Jan A. Kors, Bob J. A. Schijvenaars, Barend Mons:
Research for research: tools for knowledge discovery and visualization. AMIA 2002 - 2001
- [c2]Erik M. van Mulligen, Barend Mons, Martin Schmidt, Mario Diwersy, Achim Domma:
Architecture for Information Mediation. MedInfo 2001: 301 - 2000
- [c1]Erik M. van Mulligen, Mario Diwersy, Martin Schmidt, Henk Buurman, Barend Mons:
Facilitating networks of information. AMIA 2000
Coauthor Index
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