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ORCIDBiosystems, Volume 103
Volume 103, Number 1, January 2011
- József Garay
:
Active centrum hypothesis: The origin of chiral homogeneity and the RNA-world. 1-12 - Yubing Gong, Yanhang Xie, Xiu Lin, Yinghang Hao:
Non-Gaussian noise-optimized intracellular cytosolic calcium oscillations. 13-17 - Rodrick Wallace:
Structure and dynamics of the 'protein folding code' inferred using Tlusty's topological rate distortion approach. 18-26 - Steady Mushayabasa, Jean M. Tchuenche, Claver P. Bhunu, E. Ngarakana-Gwasira:
Modeling gonorrhea and HIV co-interaction. 27-37 - Yaochu Jin, Yan Meng:
Emergence of robust regulatory motifs from in silico evolution of sustained oscillation. 38-44 - Jose A. Fernandez-Leon:
Evolving experience-dependent robust behaviour in embodied agents. 45-56 - Sayed-Amir Marashi, Alexander Bockmayr:
Flux coupling analysis of metabolic networks is sensitive to missing reactions. 57-66 - Claudia Eberle, Christoph Ament:
The Unscented Kalman Filter estimates the plasma insulin from glucose measurement. 67-72 - Stamatios C. Nicolis, Audrey Dussutour:
Resource exploitation strategies in the presence of traffic between food sources. 73-78 - Itsuki Kunita, Shigeru Sakurazawa, Hajime Honda:
Up-and-down movement of a sliding actin filament in the in vitro motility assay. 79-84 - Atsuo Yamauchi, Jun Tanimoto, Aya Hagishima:
An analysis of network reciprocity in Prisoner's Dilemma games using Full Factorial Designs of Experiment. 85-92 - Motoya Wakiyama, Jun Tanimoto:
Reciprocity phase in various 2 × 2 games by agents equipped with two-memory length strategy encouraged by grouping for interaction and adaptation. 93-104 - Kazuhito Yamasaki, Kazuyoshi Z. Nanjo, Satoshi Chiba:
Symmetry and entropy of biological patterns: Discrete Walsh functions for 2D image analysis. 105-112
Volume 103, Number 2, February 2011
- Abir U. Igamberdiev:
Special issue: Computational models in photosynthesis. 113-114
- David Safránek, Jan Cervený, Matej Klement, Jana Pospísilová, Lubos Brim, Dusan Lazar, Ladislav Nedbal:
E-photosynthesis: Web-based platform for modeling of complex photosynthetic processes. 115-124 - Oleg V. Moskvin, Dmitry Bolotin, Andrew Wang, Pavel S. Ivanov, Mark Gomelsky:
Rhodobase, a meta-analytical tool for reconstructing gene regulatory networks in a model photosynthetic bacterium. 125-131 - Fabio Pichierri:
A quantum mechanical analysis of the light-harvesting complex 2 (LH2) from purple photosynthetic bacteria: Insights into the electrostatic effects of transmembrane helices. 132-137 - Wim Vredenberg:
Kinetic analyses and mathematical modeling of primary photochemical and photoelectrochemical processes in plant photosystems. 138-151 - Ya Guo, Jinglu Tan:
Modeling and simulation of the initial phases of chlorophyll fluorescence from Photosystem II. 152-157 - Teena Tongra, Pooja Mehta, Sonal Mathur, Divya Agrawal, Sudhakar Bharti, Dmitry A. Los, Suleyman I. Allakhverdiev, Anjana Jajoo:
Computational analysis of fluorescence induction curves in intact spinach leaves treated at different pH. 158-163 - Alexey V. Vershubskii, Ilya V. Kuvykin, Vladimir I. Priklonskii, Alexander N. Tikhonov:
Functional and topological aspects of pH-dependent regulation of electron and proton transport in chloroplasts in silico. 164-179 - Ilya B. Kovalenko, Anna M. Abaturova, Galina Yu. Riznichenko, Andrei B. Rubin:
Computer simulation of interaction of photosystem 1 with plastocyanin and ferredoxin. 180-187 - Natalia E. Belyaeva, Franz-Josef Schmitt, Vladimir Z. Paschenko, Galina Yu. Riznichenko, Andrei B. Rubin, Gernot Renger:
PS II model based analysis of transient fluorescence yield measured on whole leaves of Arabidopsis thaliana after excitation with light flashes of different energies. 188-195 - Oliver Ebenhöh, Torsten Houwaart, Heiko Lokstein, Stephanie Schlede, Katrin Tirok:
A minimal mathematical model of nonphotochemical quenching of chlorophyll fluorescence. 196-204
- Mabrouk A. El-Sharkawy:
Overview: Early history of crop growth and photosynthesis modeling. 205-211 - Sergio Grimbs, Anne Arnold, Aneta Koseska, Jürgen Kurths, Joachim Selbig, Zoran Nikoloski:
Spatiotemporal dynamics of the Calvin cycle: Multistationarity and symmetry breaking instabilities. 212-223 - Abir U. Igamberdiev, Leszek A. Kleczkowski:
Optimization of CO2 fixation in photosynthetic cells via thermodynamic buffering. 224-229 - Marc R. Roussel, Abir U. Igamberdiev:
Dynamics and mechanisms of oscillatory photosynthesis. 230-238 - Marcel J. André:
Modelling 18O2 and 16O2 unidirectional fluxes in plants: I. Regulation of pre-industrial atmosphere. 239-251 - Marcel J. André:
Modelling 18O2 and 16O2 unidirectional fluxes in plants: II. Analysis of Rubisco evolution. 252-264 - Hadi Farazdaghi:
The single-process biochemical reaction of Rubisco: A unified theory and model with the effects of irradiance, CO2 and rate-limiting step on the kinetics of C3 and C4 photosynthesis from gas exchange. 265-284 - Andrey Yu. Dubinsky, Alexander A. Ivlev:
Computational analysis of the oscillatory dynamics in the processes of CO2 assimilation and photorespiration. 285-290 - Olav Keerberg, Hiie Ivanova, Hille Keerberg, Tiit Pärnik, Peeter Talts, Per Gardeström:
Quantitative analysis of photosynthetic carbon metabolism in protoplasts and intact leaves of barley. Determination of carbon fluxes and pool sizes of metabolites in different cellular compartments. 291-301 - Henning Tschiersch, Ljudmilla Borisjuk, Twan Rutten, Hardy Rolletschek:
Gradients of seed photosynthesis and its role for oxygen balancing. 302-308 - Dan Bruhn, Teis Nørgaard Mikkelsen, Mathias Herbst, Werner L. Kutsch, Marilyn C. Ball, Kim Pilegaard:
Estimating daytime ecosystem respiration from eddy-flux data. 309-313
Volume 103, Number 3, March 2011
- Carsten Herrmann-Pillath, Stanley N. Salthe:
Triadic conceptual structure of the maximum entropy approach to evolution. 315-330 - Soichiro Tsuda, Jeff Jones:
The emergence of synchronization behavior in Physarum polycephalum and its particle approximation. 331-341 - Kumiko Kihara, Kotaro Mori, Shingo Suzuki, Kazufumi Hosoda, Akito Yamada, Shin-Ichi Matsuyama, Akiko Kashiwagi, Tetsuya Yomo:
Probabilistic transition from unstable predator-prey interaction to stable coexistence of Dictyostelium discoideum and Escherichia coli. 342-347 - Shigehiro Namiki, Ryohei Kanzaki:
Offset response of the olfactory projection neurons in the moth antennal lobe. 348-354 - Martin Bier, Francisco J. Cao:
How occasional backstepping can speed up a processive motor protein. 355-359 - Hyun Mo Yang, Maria de Lourdes da Graça Macoris, Karen Cristina Galvani, Maria Teresa Macoris Andrighetti:
Follow up estimation of Aedes aegypti entomological parameters and mathematical modellings. 360-371 - Greg Lemon, Daniel Howard, Felicity R. A. J. Rose, John R. King:
Individual-based modelling of angiogenesis inside three-dimensional porous biomaterials. 372-383 - Kazunari Iwamoto, Hiroyuki Hamada, Yukihiro Eguchi, Masahiro Okamoto:
Mathematical modeling of cell cycle regulation in response to DNA damage: Exploring mechanisms of cell-fate determination. 384-391 - Anthony J. T. Lee, Ming-Chih Lin, Chia-Ming Hsu:
Mining Dense Overlapping Subgraphs in weighted protein-protein interaction networks. 392-399 - Ken-ichiro Ogawa, Yoshihiro Miyake:
Generation model of positional values as cell operation during the development of multicellular organisms. 400-409 - Sabine Pérès, François Vallée, Marie Beurton-Aimar, Jean-Pierre Mazat:
ACoM: A classification method for elementary flux modes based on motif finding. 410-419 - Shiro Saito, Osamu Narikiyo:
Scale-free dynamics of somatic adaptability in immune system. 420-424 - Zaher Dawy, Elias Yaacoub, Marcel Nassar, Rami Abdallah, Hady Ali Zeineddine:
A multiorganism based method for Bayesian gene network estimation. 425-434
- Paulo Vilaça, Isabel Rocha, Miguel Rocha:
A computational tool for the simulation and optimization of microbial strains accounting integrated metabolic/regulatory information. 435-441 - Catalin Buiu, Octavian Arsene, Elena Corina Cipu, Monica Patrascu:
A software tool for modeling and simulation of numerical P systems. 442-447
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