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Joachim Selbig
Person information
- affiliation: University of Potsdam, Department of Bioinformatics, Germany
- affiliation: Max Planck Institute of Molecular Plant Physiology (MPIMP), Potsdam, Germany
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2010 – 2019
- 2016
- [j40]Christian Edlich-Muth, Moses Muraya, Thomas Altmann
, Joachim Selbig:
Phenomic prediction of maize hybrids. Biosyst. 146: 102-109 (2016) - 2015
- [j39]Dorothee Childs, Sergio Grimbs, Joachim Selbig:
Refined elasticity sampling for Monte Carlo-based identification of stabilizing network patterns. Bioinform. 31(12): 214-220 (2015) - [c15]Alberto Castellini, Christian Edlich-Muth, Moses Muraya, Christian Klukas, Thomas Altmann
, Joachim Selbig:
Towards a Graph-Theoretic Approach to Hybrid Performance Prediction from Large-Scale Phenotypic Data. IPCAT 2015: 173-184 - 2014
- [j38]Sebastian Klie, Zoran Nikoloski
, Joachim Selbig:
Biological Cluster Evaluation for Gene Function Prediction. J. Comput. Biol. 21(6): 428-445 (2014) - 2013
- [j37]Natascha Hill, Alexander Leow, Christoph Bleidorn
, Detlef Groth, Ralph Tiedemann
, Joachim Selbig, Stefanie Hartmann:
Analysis of phylogenetic signal in protostomial intron patterns using Mutual Information. Theory Biosci. 132(2): 93-104 (2013) - 2012
- [j36]Abdelhalim Larhlimi
, Georg Basler, Sergio Grimbs, Joachim Selbig, Zoran Nikoloski
:
Stoichiometric capacitance reveals the theoretical capabilities of metabolic networks. Bioinform. 28(18): 502-508 (2012) - [j35]Dorothee Girbig, Joachim Selbig, Sergio Grimbs:
A MATLAB toolbox for structural kinetic modeling. Bioinform. 28(19): 2546-2547 (2012) - [j34]Abdelhalim Larhlimi
, László Dávid, Joachim Selbig, Alexander Bockmayr
:
F2C2: a fast tool for the computation of flux coupling in genome-scale metabolic networks. BMC Bioinform. 13: 57 (2012) - [j33]Manuela Hische, Abdelhalim Larhlimi
, Franziska Schwarz, Antje Fischer-Rosinský, Thomas Bobbert, Anke Assmann
, Gareth Catchpole, Andreas F. H. Pfeiffer
, Lothar Willmitzer, Joachim Selbig, Joachim Spranger:
A distinct metabolic signature predicts development of fasting plasma glucose. J. Clin. Bioinform. 2: 3 (2012) - [c14]Kristen Feher, Kathrin Jürchott, Joachim Selbig:
Tailored Strategies for the Analysis of Metabolomic Data. IPCAT 2012: 82-89 - 2011
- [j32]Georg Basler, Oliver Ebenhöh
, Joachim Selbig, Zoran Nikoloski
:
Mass-balanced randomization of metabolic networks. Bioinform. 27(10): 1397-1403 (2011) - [j31]Sergio Grimbs
, Anne Arnold, Aneta Koseska, Jürgen Kurths, Joachim Selbig, Zoran Nikoloski
:
Spatiotemporal dynamics of the Calvin cycle: Multistationarity and symmetry breaking instabilities. Biosyst. 103(2): 212-223 (2011) - [j30]Zoran Nikoloski
, Sergio Grimbs
, Sebastian Klie, Joachim Selbig:
Complexity of automated gene annotation. Biosyst. 104(1): 1-8 (2011) - [j29]Kathrin Jürchott, Ke-Tai Guo, Gareth Catchpole, Kristen Feher, Lothar Willmitzer, Christian Schichor, Joachim Selbig:
Comparison of metabolite profiles in U87 glioma cells and mesenchymal stem cells. Biosyst. 105(2): 130-139 (2011) - [j28]Abdelhalim Larhlimi
, Sylvain Blachon, Joachim Selbig, Zoran Nikoloski
:
Robustness of metabolic networks: A review of existing definitions. Biosyst. 106(1): 1-8 (2011) - 2010
- [j27]Dirk Repsilber, Sabine Kern, Anna Telaar, Gerhard Walzl
, Gillian F. Black
, Joachim Selbig, Shreemanta K. Parida
, Stefan H. E. Kaufmann
, Marc Jacobsen
:
Biomarker discovery in heterogeneous tissue samples -taking the in-silico deconfounding approach. BMC Bioinform. 11: 27 (2010) - [j26]Bruno B. Schwenk, Joachim Selbig, Yehuda Ben-Zion, Matthias Holschneider:
ExPlanes: Exploring Planes in Triplet Data. J. Integr. Bioinform. 7(3) (2010)
2000 – 2009
- 2009
- [j25]Pawel Durek, Christian Schudoma, Wolfram Weckwerth
, Joachim Selbig, Dirk Walther
:
Detection and characterization of 3D-signature phosphorylation site motifs and their contribution towards improved phosphorylation site prediction in proteins. BMC Bioinform. 10 (2009) - [j24]Joachim Selbig, Matthias Steinfath, Dirk Repsilber:
Network Structure and Biological Function: Reconstruction, Modeling, and Statistical Approaches. EURASIP J. Bioinform. Syst. Biol. 2009 (2009) - [c13]Michal Rosen-Zvi, Ehud Aharoni, Joachim Selbig:
HIV-1 Drug Resistance Prediction and Therapy Optimization: A Case Study for the Application of Classification and Clustering Methods. Similarity-Based Clustering 2009: 185-201 - 2008
- [j23]Steve Dworschak, Susanne Grell, Victoria J. Nikiforova, Torsten Schaub
, Joachim Selbig:
Modeling Biological Networks by Action Languages via Answer Set Programming. Constraints An Int. J. 13(1-2): 21-65 (2008) - [j22]Joshua L. Heazlewood
, Pawel Durek, Jan Hummel, Joachim Selbig, Wolfram Weckwerth
, Dirk Walther
, Waltraud X. Schulze:
PhosPhAt: a database of phosphorylation sites in Arabidopsis thaliana and a plant-specific phosphorylation site predictor. Nucleic Acids Res. 36(Database-Issue): 1015-1021 (2008) - [c12]Zoran Nikoloski
, Sergio Grimbs
, Joachim Selbig, Oliver Ebenhöh
:
Hardness and Approximability of the Inverse Scope Problem. WABI 2008: 99-112 - 2007
- [j21]Wolfram Stacklies, Henning Redestig
, Matthias Scholz
, Dirk Walther
, Joachim Selbig:
pcaMethods - a bioconductor package providing PCA methods for incomplete data. Bioinform. 23(9): 1164-1167 (2007) - [j20]Ralf Steuer
, Adriano Nunes Nesi, Alisdair R. Fernie, Thilo Gross, Bernd Blasius
, Joachim Selbig:
From structure to dynamics of metabolic pathways: application to the plant mitochondrial TCA cycle. Bioinform. 23(11): 1378-1385 (2007) - [j19]Jan Hummel, Michaela Niemann, Stefanie Wienkoop
, Waltraud X. Schulze, Dirk Steinhauser
, Joachim Selbig, Dirk Walther
, Wolfram Weckwerth
:
ProMEX: a mass spectral reference database for proteins and protein phosphorylation sites. BMC Bioinform. 8 (2007) - [j18]Henning Redestig
, Daniel Weicht, Joachim Selbig, Matthew A. Hannah
:
Transcription factor target prediction using multiple short expression time series from Arabidopsis thaliana. BMC Bioinform. 8 (2007) - [e1]Claudia Falter, Alexander Schliep, Joachim Selbig, Martin Vingron, Dirk Walther:
Proceedings of the German Conference on Bioinformatics, GCB 2007, September 26-28, 2007, Potsdam, Germany. LNI P-115, GI 2007, ISBN 978-3-88579-209-3 [contents] - 2006
- [j17]Ralf Steuer
, Peter Humburg
, Joachim Selbig:
Validation and functional annotation of expression-based clusters based on gene ontology. BMC Bioinform. 7: 380 (2006) - [j16]Matthias Steinfath, Dirk Repsilber, Manuela Hische, Nicolas Schauer, Alisdair R. Fernie, Joachim Selbig:
Metabolite profiles as a reflection of physiological status -- a methodological validation. J. Integr. Bioinform. 3(2) (2006) - [c11]Kirsten Roomp, Niko Beerenwinkel, Tobias Sing, Eugen Schülter, Joachim Büch, Saleta Sierra-Aragon, Martin Däumer, Daniel Hoffmann
, Rolf Kaiser, Thomas Lengauer, Joachim Selbig:
Arevir: A Secure Platform for Designing Personalized Antiretroviral Therapies Against HIV. DILS 2006: 185-194 - [c10]Henning Redestig, Florian Sohler, Ralf Zimmer
, Joachim Selbig:
Unsupervised Decision Trees Structured by Gene Ontology (GO-UDTs) for the Interpretation of Microarray Data. GfKl 2006: 585-592 - [c9]Susanne Grell, Torsten Schaub
, Joachim Selbig:
Modelling Biological Networks by Action Languages Via Answer Set Programming. ICLP 2006: 285-299 - 2005
- [j15]Niko Beerenwinkel, Jörg Rahnenführer
, Rolf Kaiser, Daniel Hoffmann
, Joachim Selbig, Thomas Lengauer:
Mtreemix: a software package for learning and using mixture models of mutagenetic trees. Bioinform. 21(9): 2106-2107 (2005) - [j14]Matthias Scholz
, Fatma Kaplan
, Charles L. Guy, Joachim Kopka
, Joachim Selbig:
Non-linear PCA: a missing data approach. Bioinform. 21(20): 3887-3895 (2005) - [j13]Niko Beerenwinkel, Tobias Sing, Thomas Lengauer, Jörg Rahnenführer
, Kirsten Roomp, Igor Savenkov, Roman Fischer, Daniel Hoffmann
, Joachim Selbig, Klaus Korn
, Hauke Walter, Thomas Berg
, Patrick Braun, Gerd Fätkenheuer, Mark Oette, Jürgen K. Rockstroh, Bernd Kupfer, Rolf Kaiser, Martin Däumer:
Computational methods for the design of effective therapies against drug resistant HIV strains. Bioinform. 21(21): 3943-3950 (2005) - [j12]Jan Hummel, Nima Keshvari, Wolfram Weckwerth
, Joachim Selbig:
Species-specific analysis of protein sequence motifs using mutual information. BMC Bioinform. 6: 164 (2005) - [j11]Niko Beerenwinkel, Jörg Rahnenführer
, Martin Däumer, Daniel Hoffmann
, Rolf Kaiser, Joachim Selbig, Thomas Lengauer:
Learning Multiple Evolutionary Pathways from Cross-Sectional Data. J. Comput. Biol. 12(6): 584-598 (2005) - 2004
- [j10]André Flöter, Jacques Nicolas, Torsten Schaub, Joachim Selbig:
Threshold extraction in metabolite concentration data. Bioinform. 20(10): 1491-1494 (2004) - [j9]Dirk Steinhauser
, Björn H. Junker, Alexander Lüdemann, Joachim Selbig, Joachim Kopka
:
Hypothesis-driven approach to predict transcriptional units from gene expression data. Bioinform. 20(12): 1928-1939 (2004) - [j8]Matthias Scholz
, S. Gatzek, Alisdair R. Sterling, Oliver Fiehn, Joachim Selbig:
Metabolite fingerprinting: detecting biological features by independent component analysis. Bioinform. 20(15): 2447-2454 (2004) - [j7]Alexander Lüdemann, Daniel Weicht, Joachim Selbig, Joachim Kopka
:
PaVESy: Pathway Visualization and Editing System. Bioinform. 20(16): 2841-2844 (2004) - [j6]Carsten O. Daub
, Ralf Steuer
, Joachim Selbig, Sebastian Kloska:
Estimating mutual information using B-spline functions - an improved similarity measure for analysing gene expression data. BMC Bioinform. 5: 118 (2004) - [c8]Matthias Scholz, Yves Gibon, Mark Stitt, Joachim Selbig:
Independent components analysis of starch deficient pgm mutants. German Conference on Bioinformatics 2004: 95-104 - [c7]Niko Beerenwinkel, Jörg Rahnenführer
, Martin Däumer, Daniel Hoffmann, Rolf Kaiser, Joachim Selbig, Thomas Lengauer:
Learning multiple evolutionary pathways from cross-sectional data. RECOMB 2004: 36-44 - 2003
- [j5]Carsten O. Daub
, Sebastian Kloska, Joachim Selbig:
MetaGeneAlyse: analysis of integrated transcriptional and metabolite data. Bioinform. 19(17): 2332-2333 (2003) - [j4]Niko Beerenwinkel, Martin Däumer, Mark Oette, Klaus Korn
, Daniel Hoffmann
, Rolf Kaiser, Thomas Lengauer, Joachim Selbig, Hauke Walter:
Geno2pheno: estimating phenotypic drug resistance from HIV-1 genotypes. Nucleic Acids Res. 31(13): 3850-3855 (2003) - [c6]André Flöter, Jacques Nicolas, Torsten Schaub, Joachim Selbig:
Threshold extraction in metabolite concentration data. German Conference on Bioinformatics 2003: 33-39 - [c5]Niko Beerenwinkel, Thomas Lengauer, Martin Däumer, Rolf Kaiser, Hauke Walter, Klaus Korn, Daniel Hoffmann, Joachim Selbig:
Methods for optimizing antiviral combination therapies. ISMB (Supplement of Bioinformatics) 2003: 16-25 - 2002
- [j3]Niko Beerenwinkel, Barbara Schmidt, Hauke Walter, Rolf Kaiser, Thomas Lengauer, Daniel Hoffmann
, Klaus Korn
, Joachim Selbig:
Diversity and complexity of HIV-1 drug resistance: A bioinformatics approach to predicting phenotype from genotype. Proc. Natl. Acad. Sci. USA 99(12): 8271-8276 (2002) - [c4]Ralph E. Steuer, Jürgen Kurths, Carsten O. Daub, Janko Weise, Joachim Selbig:
The mutual information: Detecting and evaluating dependencies between variables. ECCB 2002: 231-240 - 2001
- [j2]Niko Beerenwinkel, Barbara Schmidt, Hauke Walter, Rolf Kaiser, Thomas Lengauer, Daniel Hoffmann
, Klaus Korn, Joachim Selbig:
Geno2pheno: Interpreting Genotypic HIV Drug Resistance Tests. IEEE Intell. Syst. 16(6): 35-41 (2001) - [c3]Niko Beerenwinkel, Barbara Schmidt, Hauke Walter, Rolf Kaiser, Thomas Lengauer, Daniel Hoffmann, Klaus Korn, Joachim Selbig:
Identifying drug resistance-associated patterns in HIV genotypes. German Conference on Bioinformatics 2001: 126-130
1990 – 1999
- 1999
- [j1]Joachim Selbig, Heinz-Theodor Mevissen, Thomas Lengauer:
Decision tree-based formation of consensus protein secondary structure prediction. Bioinform. 15(12): 1039-1046 (1999)
1980 – 1989
- 1988
- [b1]Joachim Selbig:
Zum automatischen Erlernen von Beschreibungen für Klassen von Veränderungen strukturierter Objekte aus Beispielen. Akademie der Wissenschaften der DDR, Berlin, Germany, 1988, pp. 1-101 - 1986
- [c2]Joachim Selbig:
Knowledge Acquisition by Inductive Learning from Examples. AII 1986: 145-163 - 1981
- [c1]Fritz Wysotzki, Werner Kolbe, Joachim Selbig:
Concept Learning by Structured Examples - An Algebraic Approach. IJCAI 1981: 153-158
Coauthor Index
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