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ORCIDIn Silico Biology, Volume 3
Volume 3, Numbers 1-2, 2003
- Nikolay A. Kolchanov, Ralf Hofestädt:
The 3rd International Conference on Bioinformatics of Genome Regulation and Structure (BGRS 2002) - Preface. 1-2 - Alexei E. Kazakov, Olga Vassieva, Mikhail S. Gelfand, Andrei Osterman, Ross A. Overbeek:
Bioinformatics classification and functional analysis of PhoH homologs. 3-15 - Vassily A. Lyubetsky, Vladimir V. V'yugin:
Methods of horizontal gene transfer determination using phylogenetic data. 17-31 - Ludmila V. Danilova, Vassily A. Lyubetsky, Mikhail S. Gelfand:
An algorithm for identification of regulatory signals in unaligned DNA sequences, its testing and parallel implementation. 33-47 - Elena D. Stavrovskaya, Andrey A. Mironov:
Two genetic algorithms for identification of regulatory signals. 49-56 - Christopher R. Lockwood, Timothy M. Frayling:
Combining genome and mouse knockout expression data to highlight binding sites for the transcription factor HNF1alpha. 57-70 - Ekaterina Shelest, Alexander E. Kel, Ellen Gößling, Edgar Wingender:
Prediction of potential C/EBP/NF-kappaB composite elements using matrix-based search methods. 71-79 - Victor G. Levitsky, Alexey V. Katokhin:
Recognition of eukaryotic promoters using a genetic algorithm based on iterative discriminant analysis. 81-87 - Alexander V. Spirov, David M. Holloway:
Making the body plan: Precision in the genetic hierarchy of Drosophila embryo segmentation. 89-100 - Rustem N. Tchuraev, Alexander V. Galimzyanov:
Parametric stability evaluation in computer experiments on the mathematical model of Drosophila control gene subnetwork. 101-115 - Olga G. Smirnova, Irina L. Stepanenko:
Application of filter technology in Photomorphogenesis Gene Network. 117-125 - Mathias Vandenbogaert, Vsevolod J. Makeev:
Analysis of bacterial RM-Systems through genome-scale analysis and related taxonomic issues. 127-143 - Olga V. Kel-Margoulis, Dmitri Tchekmenev, Alexander E. Kel, Ellen Gößling, Klaus Hornischer, Birgit Lewicki-Potapov, Edgar Wingender:
Composition-sensitive analysis of the human genome for regulatory signals. 145-171 - Yuri F. Bogdanov, Sergei Y. Dadashev, Tatiana M. Grishaeva:
In silico search for functionally similar proteins involved in meiosis and recombination in evolutionarily distant organisms. 173-185 - Sonja M. Schwarzl, Danzhi Huang, Jeremy C. Smith, Stefan Fischer:
How well does charge reparametrisation account for solvent screening in molecular mechanics calculations? The example of myosin. 187-196 - Olga V. Kalinina, Vsevolod J. Makeev, Roman A. Sutormin, Mikhail S. Gelfand, Aleksandra B. Rakhmaninova:
The channel in transporters is formed by residues that are rare in transmembrane helices. 197-204 - Lily Ph. Nizolenko, Alexander G. Bachinsky, Andrey N. Naumochkin, Andrey A. Yarigin, Dmitry A. Grigorovich:
Database of patterns PROF_PAT, used to detect local similarities. 205-213 - Andreas Freier, Ralf Hofestädt, Matthias Lange:
IIUDB: An object-oriented system for modelling, integration and analysis of gene controlled metabolic networks. 215-227 - Heike Pospisil, Alexander Herrmann, Harald Pankow, Jens G. Reich:
A database on alternative splice forms on the Integrated Genetic Map Service (IGMS). 229-234
Volume 3, Number 3, 2003
- Daiya Takai, Peter A. Jones:
The CpG Island Searcher: A new WWW resource. 235-240 - Boris A. Galitsky:
Revealing the set of mutually correlated positions for the protein families of immunoglobulin fold. 241-264 - Hans-Peter Keck, Thomas Wetter:
Functional classification of proteins using a nearest neighbour algorithm. 265-275 - Tannistha Nandi, Krishnamoorthy Kannan, Srinivasan Ramachandran:
The low complexity proteins from enteric pathogenic bacteria: Taxonomic parallels embedded in diversity. 277-285 - Soumita Das, Keya Chaudhuri:
Identification of a unique IAHP (IcmF associated homologous proteins) cluster in Vibrio cholerae and other proteobacteria through in silico analysis. 287-300 - Chad Creighton, Samir Hanash:
Expression of matrix metalloproteinase 9 (MMP-9/gelatinase B) in adenocarcinomas strongly correlated with expression of immune response genes. 301-311 - Georg Fuellen, Michael Spitzer, Paul Cullen, Stefan Lorkowski:
BLASTing proteomes, yielding phylogenies. 313-319
- Ionela Zevedei-Oancea, Stefan Schuster:
Topological analysis of metabolic networks based on Petri net theory. 323-345 - Ming Chen, Ralf Hofestädt:
Quantitative Petri net model of gene regulated metabolic networks in the cell. 347-365 - Klaus Voss, Monika Heiner, Ina Koch:
Steady state analysis of metabolic pathways using Petri nets. 367-387 - Hiroshi Matsuno, Yukiko Tanaka, Hitoshi Aoshima, Atsushi Doi, Mika Matsui, Satoru Miyano:
Biopathways representation and simulation on hybrid functional Petri net. 389-404
Volume 3, Number 4, 2003
- Arnim Wiezer, Rainer Merkl:
secureBLAST. 405-409 - Nikolai Petrovsky, Christian Schönbach, Vladimir Brusic:
Bioinformatic strategies for better understanding of immune function. 411-416 - Oliviero Carugo:
Prediction of protein polypeptide fragments exposed to the solvent. 417-428 - Chintalapati Janaki, Rajendra R. Joshi:
Accelerating comparative genomics using parallel computing. 429-440 - Maike Tech, Rainer Merkl:
YACOP: Enhanced gene prediction obtained by a combination of existing methods. 441-451 - Miroslava Cuperlovic-Culf, Gilles A. Robichaud, Michel Nardini, Rodney Ouellette:
Investigation of interaction between Pax5 isoforms and thioredoxin using de novo modelling methods. 453-469 - Alexander N. Gorban, Andrei Yu. Zinovyev, Tatyana G. Popova:
Seven clusters in genomic triplet distributions. 471-482
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