SIAM Journal on Scientific Computing, Volume 35

Volume 35, Number 1, 2013

Methods and Algorithms for Scientific Computing

• 
  Kenji Kashima, Reiichiro Kawai:
  On Weak Approximation of Stochastic Differential Equations through Hard Bounds by Mathematical Programming.
• 
  Sebastiano Boscarino, Lorenzo Pareschi, Giovanni Russo:
  Implicit-Explicit Runge-Kutta Schemes for Hyperbolic Systems and Kinetic Equations in the Diffusion Limit.
• 
  Xiaoying Dai, Yvon Maday:
  Stable Parareal in Time Method for First- and Second-Order Hyperbolic Systems.
• 
  Cris Cecka, Eric Darve:
  Fourier-Based Fast Multipole Method for the Helmholtz Equation.
• 
  Helmut Harbrecht, Johannes Tausch:
  On the Numerical Solution of a Shape Optimization Problem for the Heat Equation.
• 
  Hailiang Liu, Michael Pollack, Haseena Saran:
  Alternating Evolution Schemes for Hamilton-Jacobi Equations.
• 
  Bokai Yan, Shi Jin:
  A Successive Penalty-Based Asymptotic-Preserving Scheme for Kinetic Equations.
• 
  Peter R. Brune, Matthew G. Knepley, L. Ridgway Scott:
  Unstructured Geometric Multigrid in Two and Three Dimensions on Complex and Graded Meshes.
• 
  Stefania Bellavia, Jacek Gondzio, Benedetta Morini:
  A Matrix-Free Preconditioner for Sparse Symmetric Positive Definite Systems and Least-Squares Problems.
• 
  Hanieh Mirzaee, James King, Jennifer K. Ryan, Robert M. Kirby:
  Smoothness-Increasing Accuracy-Conserving Filters for Discontinuous Galerkin Solutions over Unstructured Triangular Meshes.
• 
  Ebrahim M. Kolahdouz, David Salac:
  A Semi-implicit Gradient Augmented Level Set Method.
• 
  Jared Lee Aurentz, Raf Vandebril, David S. Watkins:
  Fast Computation of the Zeros of a Polynomial via Factorization of the Companion Matrix.
• 
  Nick Vannieuwenhoven, Karl Meerbergen:
  IMF: An Incomplete Multifrontal LU-Factorization for Element-Structured Sparse Linear Systems.
• 
  Shawn W. Walker:
  Tetrahedralization of Isosurfaces with Guaranteed-Quality by Edge Rearrangement (TIGER).
• 
  Roel Van Beeumen, Karl Meerbergen, Wim Michiels:
  A Rational Krylov Method Based on Hermite Interpolation for Nonlinear Eigenvalue Problems.
• 
  David I. Ketcheson, Matteo Parsani, Randall J. LeVeque:
  High-Order Wave Propagation Algorithms for Hyperbolic Systems.
• 
  Adam M. Oberman:
  A Numerical Method for Variational Problems with Convexity Constraints.
• 
  Mila Nikolova, Michael K. Ng, Chi-Pan Tam:
  On 퓁₁ Data Fitting and Concave Regularization for Image Recovery.
• 
  Marco Caliari, Alexander Ostermann, Stefan Rainer:
  Meshfree Exponential Integrators.
• 
  David Fritzsche, Andreas Frommer, Stephen D. Shank, Daniel B. Szyld:
  Overlapping Blocks by Growing a Partition with Applications to Preconditioning.
• 
  Carla D. Martin, Richard Shafer, Betsy LaRue:
  An Order-p Tensor Factorization with Applications in Imaging.
• 
  Santiago Badia, Joan Baiges:
  Adaptive Finite Element Simulation of Incompressible Flows by Hybrid Continuous-Discontinuous Galerkin Formulations.
• 
  Xuan Vinh Doan, Kim-Chuan Toh, Stephen A. Vavasis:
  A Proximal Point Algorithm for Sequential Feature Extraction Applications.

Computational Methods in Science and Engineering

• 
  Hans De Sterck, Killian Miller:
  An Adaptive Algebraic Multigrid Algorithm for Low-Rank Canonical Tensor Decomposition.
• 
  Ann S. Almgren, A. J. Aspden, John B. Bell, Michael L. Minion:
  On the Use of Higher-Order Projection Methods for Incompressible Turbulent Flow.
• 
  Penny J. Davies, Dugald B. Duncan:
  Convolution-in-Time Approximations of Time Domain Boundary Integral Equations.
• 
  Lubomír Bañas, Zdzislaw Brzezniak, Andreas Prohl:
  Computational Studies for the Stochastic Landau-Lifshitz-Gilbert Equation.
• 
  Yassine Boubendir, Svetlana Tlupova:
  Domain Decomposition Methods for Solving Stokes-Darcy Problems with Boundary Integrals.
• 
  Simon L. Cotter, Tomás Vejchodský, Radek Erban:
  Adaptive Finite Element Method Assisted by Stochastic Simulation of Chemical Systems.
• 
  Martin Burger, Jan Modersitzki, Lars Ruthotto:
  A Hyperelastic Regularization Energy for Image Registration.
• 
  Chih-Che Chueh, Ned Djilali, Wolfgang Bangerth:
  An h-Adaptive Operator Splitting Method for Two-Phase Flow in 3D Heterogeneous Porous Media.
• 
  Grady I. Lemoine, Miao-Jung Yvonne Ou, Randall J. LeVeque:
  High-Resolution Finite Volume Modeling of Wave Propagation in Orthotropic Poroelastic Media.
• 
  T. B. Jönsthövel, Martin B. van Gijzen, Cornelis Vuik, A. Scarpas:
  On the Use of Rigid Body Modes in the Deflated Preconditioned Conjugate Gradient Method.
• 
  Alison Ramage, Eugene C. Gartland Jr.:
  A Preconditioned Nullspace Method for Liquid Crystal Director Modeling.
• 
  Yunqing Huang, Jichun Li, Wei Yang:
  Modeling Backward Wave Propagation in Metamaterials by the Finite Element Time-Domain Method.
• 
  Geunseop Lee, Haoying Fu, Jesse L. Barlow:
  Fast High-Resolution Image Reconstruction Using Tikhonov Regularization Based Total Least Squares.
• 
  Patrice Hauret, Frédéric Hecht:
  A Discrete Differential Sequence for Elasticity Based upon Continuous Displacements.

Software and High-Performance Computing

• 
  Matthias Petschow, Elmar Peise, Paolo Bientinesi:
  High-Performance Solvers for Dense Hermitian Eigenproblems.
• 
  André Massing, Mats G. Larson, Anders Logg:
  Efficient Implementation of Finite Element Methods on Nonmatching and Overlapping Meshes in Three Dimensions.
• 
  Pieter Ghysels, Thomas J. Ashby, Karl Meerbergen, Wim Vanroose:
  Hiding Global Communication Latency in the GMRES Algorithm on Massively Parallel Machines.
• 
  Nicolas Bock, Matt Challacombe:
  An Optimized Sparse Approximate Matrix Multiply for Matrices with Decay.
• 
  Seher Acer, Enver Kayaaslan, Cevdet Aykanat:
  A Recursive Bipartitioning Algorithm for Permuting Sparse Square Matrices into Block Diagonal Form with Overlap.

Volume 35, Number 2, 2013

Methods and Algorithms for Scientific Computing

• 
  Saptarshi Das, Arnold Neumaier:
  Solving Overdetermined Eigenvalue Problems.
• 
  Jorgen L. Nikolajsen:
  Fractional Significant Digits.
• 
  Jie Chen:
  On the Use of Discrete Laplace Operator for Preconditioning Kernel Matrices.
• 
  Florian Kummer, Martin Oberlack:
  An Extension of the Discontinuous Galerkin Method for the Singular Poisson Equation.
• 
  Christiane Helzel, James A. Rossmanith, Bertram Taetz:
  A High-Order Unstaggered Constrained-Transport Method for the Three-Dimensional Ideal Magnetohydrodynamic Equations Based on the Method of Lines.
• 
  Nicholas Hale, Alex Townsend:
  Fast and Accurate Computation of Gauss-Legendre and Gauss-Jacobi Quadrature Nodes and Weights.
• 
  Rongjie Lai, Xue-Cheng Tai, Tony F. Chan:
  A Ridge and Corner Preserving Model for Surface Restoration.
• 
  Eugene Vecharynski, Andrew V. Knyazev:
  Absolute Value Preconditioning for Symmetric Indefinite Linear Systems.
• 
  Sheng-Gwo Chen, Jyh-Yang Wu:
  Discrete Conservation Laws on Curved Surfaces.
• 
  Paul R. Willems, Bruno Lang:
  A Framework for the MR³ Algorithm: Theory and Implementation.
• 
  Nathan O. Collier, Lisandro Dalcín, David Pardo, Victor M. Calo:
  The Cost of Continuity: Performance of Iterative Solvers on Isogeometric Finite Elements.
• 
  Bjørn Fredrik Nielsen, Kent-André Mardal:
  Analysis of the Minimal Residual Method Applied to Ill Posed Optimality Systems.
• 
  Emmanuil H. Georgoulis, Jeremy Levesley, Fazli Subhan:
  Multilevel Sparse Kernel-Based Interpolation.
• 
  Jianlin Xia:
  Efficient Structured Multifrontal Factorization for General Large Sparse Matrices.
• 
  Jaime Carpio, Juan Luis Prieto, Rodolfo Bermejo:
  Anisotropic "Goal-Oriented" Mesh Adaptivity for Elliptic Problems.
• 
  Romain Aubry, Kaan Karamete, Eric L. Mestreau, Saikat Dey, Rainald Löhner:
  Linear Sources for Mesh Generation.
• 
  Stefano Berrone, Sandra Pieraccini, Stefano Scialò:
  On Simulations of Discrete Fracture Network Flows with an Optimization-Based Extended Finite Element Method.
• 
  Damien Fournier, Raphaèle Herbin, R. Le Tellier:
  Discontinuous Galerkin Discretization and hp-Refinement for the Resolution of the Neutron Transport Equation.
• 
  Matteo Parsani, David I. Ketcheson, W. Deconinck:
  Optimized Explicit Runge-Kutta Schemes for the Spectral Difference Method Applied to Wave Propagation Problems.
• 
  Venera Khoromskaia, Boris N. Khoromskij, Reinhold Schneider:
  Tensor-Structured Factorized Calculation of Two-Electron Integrals in a General Basis.
• 
  Mohammad Shakourifar, Wayne H. Enright:
  The Cost/Reliability Trade-Off in Verifying Approximate Solutions to Differential Equations with Distributed Delays.
• 
  Lothar Nannen, Thorsten Hohage, Achim Schädle, Joachim Schöberl:
  Exact Sequences of High Order Hardy Space Infinite Elements for Exterior Maxwell Problems.
• 
  Jian Cheng, Yaowen Lu, Tiegang Liu:
  Multidomain Hybrid RKDG and WENO Methods for Hyperbolic Conservation Laws.
• 
  Marc Alexander Schweitzer:
  Variational Mass Lumping in the Partition of Unity Method.
• 
  Jan Hegemann, Alejandro Cantarero, Casey L. Richardson, Joseph M. Teran:
  An Explicit Update Scheme for Inverse Parameter and Interface Estimation of Piecewise Constant Coefficients in Linear Elliptic PDEs.
• 
  Konstantin Lipnikov, Daniil Svyatskiy, Yuri V. Vassilevski:
  Anderson Acceleration for Nonlinear Finite Volume Scheme for Advection-Diffusion Problems.
• 
  Yan Jiang, Chi-Wang Shu, Mengping Zhang:
  An Alternative Formulation of Finite Difference Weighted ENO Schemes with Lax-Wendroff Time Discretization for Conservation Laws.
• 
  Shu-Lin Wu, Ting-Zhu Huang:
  Schwarz Waveform Relaxation for a Neutral Functional Partial Differential Equation Model of Lossless Coupled Transmission Lines.
• 
  Yves Bourgault, Marco Picasso:
  Anisotropic Error Estimates and Space Adaptivity for a Semidiscrete Finite Element Approximation of the Transient Transport Equation.
• 
  Yuichiro Miki, Teruyoshi Washizawa:
  A²ILU: Auto-accelerated ILU Preconditioner for Sparse Linear Systems.

Computational Methods in Science and Engineering

• 
  Andreas Bartel, Markus Brunk, Michael Günther, Sebastian Schöps:
  Dynamic Iteration for Coupled Problems of Electric Circuits and Distributed Devices.
• 
  Hyenkyun Woo, Sangwoon Yun:
  Proximal Linearized Alternating Direction Method for Multiplicative Denoising.
• 
  Jed Brown, Barry Smith, Aron J. Ahmadia:
  Achieving Textbook Multigrid Efficiency for Hydrostatic Ice Sheet Flow.
• 
  Vladimir Druskin, Rob Remis:
  A Krylov Stability-Corrected Coordinate-Stretching Method to Simulate Wave Propagation in Unbounded Domains.
• 
  Ludovic Métivier, Romain Brossier, Jean Virieux, Stéphane Operto:
  Full Waveform Inversion and the Truncated Newton Method.
• 
  Sonia Fliss:
  A Dirichlet-to-Neumann Approach for The Exact Computation of Guided Modes in Photonic Crystal Waveguides.
• 
  Hong Wang, Weidong Zhao, Magne Espedal, Aleksey S. Telyakovskiy:
  A Component-Based Eulerian-Lagrangian Formulation for Multicomponent Multiphase Compositional Flow and Transport in Porous Media.
• 
  Stefano Berrone, Sandra Pieraccini, Stefano Scialò:
  A PDE-Constrained Optimization Formulation for Discrete Fracture Network Flows.
• 
  Bradley M. Bell, Abraham D. Flaxman:
  A Statistical Model and Estimation of Disease Rates as Functions of Age and Time.
• 
  Benjamin Rosenbaum, Volker Schulz:
  Efficient Response Surface Methods Based on Generic Surrogate Models.

Software and High-Performance Computing

• 
  Martin J. Gander, Stefan Güttel:
  PARAEXP: A Parallel Integrator for Linear Initial-Value Problems.
• 
  Che-Rung Lee:
  Minimal Split Checkerboard Method for Exponentiating Sparse Matrices and Its Applications in Quantum Statistical Mechanics.

Volume 35, Number 3, 2013

Methods and Algorithms for Scientific Computing

• 
  Gregor Gassner:
  A Skew-Symmetric Discontinuous Galerkin Spectral Element Discretization and Its Relation to SBP-SAT Finite Difference Methods.
• 
  Burhan A. Sadiq, Divakar Viswanath:
  Barycentric Hermite Interpolation.
• 
  Oliver Lass, Stefan Volkwein:
  POD Galerkin Schemes for Nonlinear Elliptic-Parabolic Systems.
• 
  Zaiwen Wen, Andre Milzarek, Michael Ulbrich, Hongchao Zhang:
  Adaptive Regularized Self-Consistent Field Iteration with Exact Hessian for Electronic Structure Calculation.
• 
  Yuji Nakatsukasa, Nicholas J. Higham:
  Stable and Efficient Spectral Divide and Conquer Algorithms for the Symmetric Eigenvalue Decomposition and the SVD.
• 
  Jungho Lee:
  Two Domain Decomposition Methods for Auxiliary Linear Problems of a Multibody Elliptic Variational Inequality.
• 
  Mike A. Botchev, Volker Grimm, Marlis Hochbruck:
  Residual, Restarting, and Richardson Iteration for the Matrix Exponential.
• 
  Wei Xu, Thomas F. Coleman:
  Efficient (Partial) Determination of Derivative Matrices via Automatic Differentiation.
• 
  Paola F. Antonietti, Stefano Giani, Paul Houston:
  hp-Version Composite Discontinuous Galerkin Methods for Elliptic Problems on Complicated Domains.
• 
  Giovanni Migliorati, Fabio Nobile, Erik von Schwerin, Raúl Tempone:
  Approximation of Quantities of Interest in Stochastic PDEs by the Random Discrete L² Projection on Polynomial Spaces.
• 
  Jian Liang, Hongkai Zhao:
  Solving Partial Differential Equations on Point Clouds.
• 
  Giuseppe Alì, Nicodemus Banagaaya, Wil H. A. Schilders, Caren Tischendorf:
  Index-Aware Model Order Reduction for Linear Index-2 DAEs with Constant Coefficients.
• 
  Vladimir A. Kazeev, Boris N. Khoromskij, Eugene E. Tyrtyshnikov:
  Multilevel Toeplitz Matrices Generated by Tensor-Structured Vectors and Convolution with Logarithmic Complexity.
• 
  Mario Arioli, Emmanuil H. Georgoulis, Daniel Loghin:
  Stopping Criteria for Adaptive Finite Element Solvers.
• 
  Abdou Garba, Pierre Haldenwang:
  A Helmholtz-Hodge Projection Method Using an Iterative Gauge Computation to Solve the 3D Generalized Stokes Problem.
• 
  Dirk Lebiedz, Jochen Siehr:
  A Continuation Method for the Efficient Solution of Parametric Optimization Problems in Kinetic Model Reduction.
• 
  Qiumei Huang, Hehu Xie, Hermann Brunner:
  The hp Discontinuous Galerkin Method for Delay Differential Equations with Nonlinear Vanishing Delay.
• 
  Vladimir Druskin, Valeria Simoncini, Mikhail Zaslavsky:
  Solution of the Time-Domain Inverse Resistivity Problem in the Model Reduction Framework Part I. One-Dimensional Problem with SISO Data.
• 
  Xin Liu, Zaiwen Wen, Yin Zhang:
  Limited Memory Block Krylov Subspace Optimization for Computing Dominant Singular Value Decompositions.
• 
  Ning Wang:
  An Efficient Search Algorithm for Minimum Covering Polygons on the Sphere.
• 
  Carlos J. S. Alves, Pedro R. S. Antunes:
  The Method of Fundamental Solutions Applied to Some Inverse Eigenproblems.
• 
  Andreas Kleefeld, Tzu-Chu Lin:
  A Global Galerkin Method for Solving the Exterior Neumann Problem for the Helmholtz Equation Using Panich's Integral Equation Approach.
• 
  Mohamed M. S. Nasser, Fayzah A. A. Al-Shihri:
  A Fast Boundary Integral Equation Method for Conformal Mapping of Multiply Connected Regions.

Computational Methods in Science and Engineering

• 
  Cristóbal Bertoglio, Alfonso Caiazzo, Miguel A. Fernández:
  Fractional-Step Schemes for the Coupling of Distributed and Lumped Models in Hemodynamics.
• 
  J. Luc Peterson, Gregory W. Hammett:
  Positivity Preservation and Advection Algorithms with Applications to Edge Plasma Turbulence.
• 
  Paola Goatin, Matthias Mimault:
  The Wave-Front Tracking Algorithm for Hughes' Model of Pedestrian Motion.
• 
  Christoph Börgers, Alexander R. Nectow:
  Exponential Time Differencing for Hodgkin-Huxley-like ODEs.
• 
  Keijo Hämäläinen, Aki Kallonen, Ville Kolehmainen, Matti Lassas, Kati Niinimäki, Samuli Siltanen:
  Sparse Tomography.
• 
  Marcus Drosson, Koen Hillewaert, Jean-André Essers:
  Stability and Boundary Resolution Analysis of the Discontinuous Galerkin Method Applied to the Reynolds-Averaged Navier-Stokes Equations Using the Spalart-Allmaras Model.
• 
  Eric C. Cyr, John N. Shadid, Raymond S. Tuminaro, Roger P. Pawlowski, Luis Chacón:
  A New Approximate Block Factorization Preconditioner for Two-Dimensional Incompressible (Reduced) Resistive MHD.
• 
  Braxton Osting, Chiu-Yen Kao:
  Minimal Convex Combinations of Sequential Laplace-Dirichlet Eigenvalues.
• 
  Raimund Bürger, Pep Mulet, Luis Miguel Villada:
  Regularized Nonlinear Solvers for IMEX Methods Applied to Diffusively Corrected Multispecies Kinematic Flow Models.
• 
  Laura Homa, Daniela Calvetti, Alexander Hoover, Erkki Somersalo:
  Bayesian Preconditioned CGLS for Source Separation in MEG Time Series.
• 
  Shi Jin, Li Wang:
  Asymptotic-Preserving Numerical Schemes for the Semiconductor Boltzmann Equation Efficient in the High Field Regime.

Software and High-Performance Computing

• 
  Marie E. Rognes, Anders Logg:
  Automated Goal-Oriented Error Control I: Stationary Variational Problems.
• 
  Jack Poulson, Björn Engquist, Siwei Li, Lexing Ying:
  A Parallel Sweeping Preconditioner for Heterogeneous 3D Helmholtz Equations.
• 
  Michael Pippig:
  PFFT: An Extension of FFTW to Massively Parallel Architectures.
•