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Yixue Li
Publications
- 2021
- [j95]Quanxue Li, Wentao Dai, Jixiang Liu, Qingqing Sang, Yi-Xue Li, Yuan-Yuan Li:
DysRegSig: an R package for identifying gene dysregulations and building mechanistic signatures in cancer. Bioinform. 37(3): 429-430 (2021) - 2018
- [j87]Wentao Dai, Quanxue Li, Bing-Ya Liu, Yi-Xue Li, Yuan-Yuan Li:
Differential networking meta-analysis of gastric cancer across Asian and American racial groups. BMC Syst. Biol. 12(4): 17-28 (2018) - 2017
- [j85]Quanxue Li, Junyi Li, Wentao Dai, Yi-Xue Li, Yuan-Yuan Li:
Differential regulation analysis reveals dysfunctional regulatory mechanism involving transcription factors and microRNAs in gastric carcinogenesis. Artif. Intell. Medicine 77: 12-22 (2017) - 2016
- [j81]Jing Yang, Su-Juan Wu, Shao-You Yang, Jia-Wei Peng, Shi-Nuo Wang, Fu-Yan Wang, Yu-Xing Song, Ting Qi, Yi-Xue Li, Yuan-Yuan Li:
DNetDB: The human disease network database based on dysfunctional regulation mechanism. BMC Syst. Biol. 10: 36 (2016) - [j80]Wentao Dai, Aiping Wu, Liang-Xiao Ma, Yi-Xue Li, Taijiao Jiang, Yuan-Yuan Li:
A novel index of protein-protein interface propensity improves interface residue recognition. BMC Syst. Biol. 10(4): 381-392 (2016) - [j79]Su-Juan Wu, Junyi Li, Mushui Cao, Jing Yang, Yi-Xue Li, Yuan-Yuan Li:
A novel integrated gene coexpression analysis approach reveals a prognostic three-transcription-factor signature for glioma molecular subtypes. BMC Syst. Biol. 10(S-3): 71 (2016) - 2015
- [j77]Jing Yang, Su-Juan Wu, Yi-Xue Li, Yuan-Yuan Li:
DSviaDRM: an R package for estimating disease similarity via dysfunctional regulation mechanism. Bioinform. 31(23): 3870-3872 (2015) - 2013
- [j69]Huayong Xu, Hui Yu, Kang Tu, Qianqian Shi, Chaochun Wei, Yuan-Yuan Li, Yi-Xue Li:
cGRNB: a web server for building combinatorial gene regulatory networks through integrated engineering of seed-matching sequence information and gene expression datasets. BMC Syst. Biol. 7(S-2): S7 (2013) - 2012
- [j66]Hui Yu, Kang Tu, Yi-Jie Wang, Jun-Zhe Mao, Lu Xie, Yuan-Yuan Li, Yi-Xue Li:
Combinatorial network of transcriptional regulation and microRNA regulation in human cancer. BMC Syst. Biol. 6: 61 (2012) - [c9]Huayong Xu, Hui Yu, Kang Tu, Qianqian Shi, Chaochun Wei, Yuanyuan Li, Yixue Li:
cGRNexp: a web platform for building combinatorial gene regulation networks based on user-uploaded gene expression datasets. ISB 2012: 113-117 - [c8]Bin Kang, Yuan-Yuan Li, Yixue Li:
Anti-clustering of circadian gene expression in mouse liver genome. ISB 2012: 273-279 - 2011
- [j56]Hui Yu, Bao-Hong Liu, Zhi-Qiang Ye, Chun Li, Yi-Xue Li, Yuan-Yuan Li:
Link-based Quantitative Methods to Identify Differentially Coexpressed Genes and Gene Pairs. BMC Bioinform. 12: 315 (2011) - [j53]Ru-Dong Li, Yuan-Yuan Li, Lingyi Lu, Cong Ren, Yi-Xue Li, Lei Liu:
An improved kinetic model for the acetone-butanol-ethanol pathway of Clostridium acetobutylicum and model-based perturbation analysis. BMC Syst. Biol. 5(S-1): S12 (2011) - 2010
- [j47]Bao-Hong Liu, Hui Yu, Kang Tu, Chun Li, Yi-Xue Li, Yuan-Yuan Li:
DCGL: an R package for identifying differentially coexpressed genes and links from gene expression microarray data. Bioinform. 26(20): 2637-2638 (2010) - [j46]Yun-Qin Chen, Hui Yu, Yi-Xue Li, Yuan-Yuan Li:
Sorting out inherent features of head-to-head gene pairs by evolutionary conservation. BMC Bioinform. 11(S-11): S16 (2010) - [j44]Yixiang Shi, Yi-Xue Li, Yuan-Yuan Li:
Large number of phosphotransferase genes in the Clostridium beijerinckii NCIMB 8052 genome and the study on their evolution. BMC Bioinform. 11(S-11): S9 (2010) - 2009
- [j41]Hui Yu, Fudong Yu, Guoqing Zhang, Xiang Shen, Yun-Qin Chen, Yuan-Yuan Li, Yi-Xue Li:
DBH2H: vertebrate head-to-head gene pairs annotated at genomic and post-genomic levels. Database J. Biol. Databases Curation 2009 (2009) - 2008
- [j25]Bin Kang, Yuan-Yuan Li, Xiao Chang, Lei Liu, Yi-Xue Li:
Modeling the Effects of Cell Cycle M-phase Transcriptional Inhibition on Circadian Oscillation. PLoS Comput. Biol. 4(3) (2008) - 2007
- [j22]Hui Yu, Feng Wang, Kang Tu, Lu Xie, Yuan-Yuan Li, Yi-Xue Li:
Transcript-level annotation of Affymetrix probesets improves the interpretation of gene expression data. BMC Bioinform. 8 (2007) - 2006
- [j19]Yuan-Yuan Li, Lei Qin, Zong-Ming Guo, Lei Liu, Hao Xu, Pei Hao, Jiong Su, Yixiang Shi, Wei-Zhong He, Yi-Xue Li:
In silico discovery of human natural antisense transcripts. BMC Bioinform. 7: 18 (2006) - [j10]Qiang Lu, Pei Hao, Vasa Curcin, Wei-Zhong He, Yuan-Yuan Li, Qing-ming Luo, Yike Guo, Yi-Xue Li:
KDE Bioscience: Platform for bioinformatics analysis workflows. J. Biomed. Informatics 39(4): 440-450 (2006) - [j9]Yuan-Yuan Li, Hui Yu, Zong-Ming Guo, Ting-Qing Guo, Kang Tu, Yi-Xue Li:
Systematic Analysis of Head-to-Head Gene Organization: Evolutionary Conservation and Potential Biological Relevance. PLoS Comput. Biol. 2(7) (2006) - [j7]Yuan-Yuan Li, Hui Yu, Zong-Ming Guo, Ting-Qing Guo, Kang Tu, Yi-Xue Li:
Correction: Systematic Analysis of Head-to-Head Gene Organization: Evolutionary Conservation and Potential Biological Relevance. PLoS Comput. Biol. 2(8) (2006)
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