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Raghu Machiraju
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Publications
- 2020
- [c65]Arunima Srivastava, Michael F. Sharpnack, Kun Huang, Parag Mallick, Raghu Machiraju:
PTR Explorer: An approach to identify and explore Post Transcriptional Regulatory mechanisms usingproteogenomics. PSB 2020: 475-486 - 2019
- [j48]Hao Ding, Michael F. Sharpnack, Chao Wang, Kun Huang, Raghu Machiraju:
Integrative cancer patient stratification via subspace merging. Bioinform. 35(10): 1653-1659 (2019) - [j46]Sundaresan Raman, Shantanu Singh, Thierry Pécot, Enrico Caserta, Kun Huang, Jens Rittscher, Gustavo Leone, Raghu Machiraju:
Capturing variations in nuclear phenotypes. J. Comput. Sci. 36 (2019) - 2018
- [j44]Xing Tang, Arunima Srivastava, Huayang Liu, Raghu Machiraju, Kun Huang, Gustavo Leone:
annoPeak: a web application to annotate and visualize peaks from ChIP-seq/ChIP-exo-seq. Bioinform. 34(16): 2879 (2018) - [c60]Arunima Srivastava, Chaitanya Kulkarni, Parag Mallick, Kun Huang, Raghu Machiraju:
Building trans-omics evidence: using imaging and 'omics' to characterize cancer profiles. PSB 2018: 377-388 - 2017
- [j43]Xing Tang, Arunima Srivastava, Huayang Liu, Raghu Machiraju, Kun Huang, Gustavo Leone:
annoPeak: a web application to annotate and visualize peaks from ChIP-seq/ChIP-exo-seq. Bioinform. 33(10): 1570-1571 (2017) - [j42]Pacharmon Kaewprag, Cheryl Newton, Brenda Vermillion, Sookyung Hyun, Kun Huang, Raghu Machiraju:
Predictive models for pressure ulcers from intensive care unit electronic health records using Bayesian networks. BMC Medical Informatics Decis. Mak. 17(2): 81-91 (2017) - [c58]Qihang Li, Kun Huang, Raghu Machiraju:
Spatiotemporal Visualization of Gene Expression in the Developing Mouse Brain. EuroVis (Short Papers) 2017: 121-125 - 2016
- [j41]Nan Meng, Raghu Machiraju, Kun Huang:
Identification of recurrent combinatorial patterns of chromatin modifications at promoters across various tissue types. BMC Bioinform. 17(S-17): 291-303 (2016) - [j40]Jie Wang, Shuli Xia, Brian Arand, Heng Zhu, Raghu Machiraju, Kun Huang, Hongkai Ji, Jiang Qian:
Single-Cell Co-expression Analysis Reveals Distinct Functional Modules, Co-regulation Mechanisms and Clinical Outcomes. PLoS Comput. Biol. 12(4) (2016) - 2015
- [j39]Hao Ding, Chao Wang, Kun Huang, Raghu Machiraju:
GRAPHIE: graph based histology image explorer. BMC Bioinform. 16(S11): S10 (2015) - [j38]Nan Meng, Raghu Machiraju, Kun Huang:
Identify Critical Genes in Development with Consistent H3K4me2 Patterns across Multiple Tissues. IEEE ACM Trans. Comput. Biol. Bioinform. 12(5): 1104-1111 (2015) - 2014
- [j37]Hao Ding, Chao Wang, Kun Huang, Raghu Machiraju:
iGPSe: A visual analytic system for integrative genomic based cancer patient stratification. BMC Bioinform. 15: 203 (2014) - [j35]Qihang Li, Gabriel Zachmann, David Feng, Kun Huang, Raghu Machiraju:
2013 IEEE Scientific Visualization Contest Winner: Observing Genomics and Phenotypical Patterns in the Developing Mouse Brain. IEEE Computer Graphics and Applications 34(5): 88-97 (2014) - [j33]A. Yates, Amy Webb, Michael F. Sharpnack, H. Chamberlin, Kun Huang, Raghu Machiraju:
Visualizing Multidimensional Data with Glyph SPLOMs. Comput. Graph. Forum 33(3): 301-310 (2014) - [i1]Hao Ding, Chao Wang, Kun Huang, Raghu Machiraju:
iGPSe: A Visual Analytic System for Integrative Genomic Based Cancer Patient Stratification. CoRR abs/1407.2107 (2014) - 2013
- [j31]Vikram Kalluru, Raghu Machiraju, Kun Huang:
Identify condition-specific gene co-expression networks. Int. J. Comput. Biol. Drug Des. 6(1/2): 50-59 (2013) - [j30]Chao Wang, Thierry Pécot, Debra L. Zynger, Raghu Machiraju, Charles L. Shapiro, Kun Huang:
Research and applications: Identifying survival associated morphological features of triple negative breast cancer using multiple datasets. J. Am. Medical Informatics Assoc. 20(4): 680-687 (2013) - 2012
- [j29]Zhi Han, Lu Tian, Thierry Pécot, Tim Hui-Ming Huang, Raghu Machiraju, Kun Huang:
A signal processing approach for enriched region detection in RNA polymerase II ChIP-seq data. BMC Bioinform. 13(S-2): S2 (2012) - [c53]Thierry Pécot, Shantanu Singh, Enrico Caserta, Kun Huang, Raghu Machiraju, Gustavo Leone:
Non parametric cell nuclei segmentation based on a tracking over depth from 3D fluorescence confocal images. ISBI 2012: 170-173 - 2011
- [c49]Shantanu Singh, Firdaus Janoos, Thierry Pécot, Enrico Caserta, Kun Huang, Jens Rittscher, Gustavo Leone, Raghu Machiraju:
Non-parametric Population Analysis of Cellular Phenotypes. MICCAI (2) 2011: 343-351 - 2010
- [c48]Lee A. D. Cooper, Joel H. Saltz, Raghu Machiraju, Kun Huang:
Two-point correlation as a feature for histology images: Feature space structure and correlation updating. CVPR Workshops 2010: 79-86 - 2009
- [j23]Kishore Mosaliganti, Firdaus Janoos, M. Okan Irfanoglu, Randall Ridgway, Raghu Machiraju, Kun Huang, Joel H. Saltz, Gustavo Leone, Michael C. Ostrowski:
Tensor classification of N-point correlation function features for histology tissue segmentation. Medical Image Anal. 13(1): 156-166 (2009) - [j22]Firdaus Janoos, Kishore Mosaliganti, Xiaoyin Xu, Raghu Machiraju, Kun Huang, Stephen T. C. Wong:
Robust 3D reconstruction and identification of dendritic spines from optical microscopy imaging. Medical Image Anal. 13(1): 167-179 (2009) - 2008
- [j21]Kishore Mosaliganti, Raghu Machiraju, Kun Huang, Gustavo Leone:
Geometry-driven Visualization of Microscopic Structures in Biology. Comput. Graph. Forum 27(3): 871-878 (2008) - [j19]Kishore Mosaliganti, Tony Pan, Randall Ridgway, Richard Sharp, Lee A. D. Cooper, Alex Gulacy, Ashish Sharma, M. Okan Irfanoglu, Raghu Machiraju, Tahsin M. Kurç, Alain de Bruin, Pamela Wenzel, Gustavo Leone, Joel H. Saltz, Kun Huang:
An imaging workflow for characterizing phenotypical change in large histological mouse model datasets. J. Biomed. Informatics 41(6): 863-873 (2008) - [j18]Kishore Mosaliganti, Lee A. D. Cooper, Richard Sharp, Raghu Machiraju, Gustavo Leone, Kun Huang, Joel H. Saltz:
Reconstruction of Cellular Biological Structures from Optical Microscopy Data. IEEE Trans. Vis. Comput. Graph. 14(4): 863-876 (2008) - [c41]Kishore Mosaliganti, Raghu Machiraju, Kun Huang:
Geometry-driven visualization of microscopic structures in biology. ISBI 2008: 828-831 - 2007
- [j15]Richard Sharp, Randall Ridgway, Kishore Mosaliganti, Pamela Wenzel, Tony Pan, Alain de Bruin, Raghu Machiraju, Kun Huang, Gustavo Leone, Joel H. Saltz:
Volume Rendering Phenotype Differences in Mouse Placenta Microscopy Data. Comput. Sci. Eng. 9(1): 38-47 (2007) - [j14]Kishore Mosaliganti, Firdaus Janoos, Richard Sharp, Randall Ridgway, Raghu Machiraju, Kun Huang, Pamela Wenzel, Alain de Bruin, Gustavo Leone, Joel H. Saltz:
Detection and Visualization of Surface-Pockets to Enable Phenotyping Studies. IEEE Trans. Medical Imaging 26(9): 1283-1290 (2007) - [c38]Firdaus Janoos, M. Okan Irfanoglu, Kishore Mosaliganti, Raghu Machiraju, Kun Huang, Pamela Wenzel, Alain de Bruin, Gustavo Leone:
Multi-Resolution Image Segmentation Using the 2-Point Correlation Functions. ISBI 2007: 300-303 - 2006
- [c34]Kishore Mosaliganti, Tony Pan, Richard Sharp, Randall Ridgway, Srivathsan Iyengar, Alexandra Gulacy, Pamela Wenzel, Alain de Bruin, Raghu Machiraju, Kun Huang, Gustavo Leone, Joel H. Saltz:
Registration and 3D visualization of large microscopy images. Medical Imaging: Image Processing 2006: 61442V
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