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ORCIDJournal of the American Medical Informatics Association, Volume 20
Volume 20, Number 1, January 2013
- Lucila Ohno-Machado:
Sharing data for the public good and protecting individual privacy: informatics solutions to combine different goals. 1
- Bradley A. Malin
, Khaled El Emam, Christine M. O'Keefe:
Biomedical data privacy: problems, perspectives, and recent advances. 2-6 - Kelly Caine, Rima Hanania:
Patients want granular privacy control over health information in electronic medical records. 7-15 - Maja van der Velden, Khaled El Emam:
"Not all my friends need to know": a qualitative study of teenage patients, privacy, and social media. 16-24 - Caitlin Pencarrick Hertzman, Nancy Meagher, Kimberlyn M. McGrail:
Privacy by Design at Population Data BC: a case study describing the technical, administrative, and physical controls for privacy-sensitive secondary use of personal information for research in the public interest. 25-28 - Deven McGraw:
Building public trust in uses of Health Insurance Portability and Accountability Act de-identified data. 29-34 - Carolyn Petersen, Paul DeMuro, Kenneth W. Goodman, Bonnie Kaplan:
Sorrell v. IMS Health: issues and opportunities for informaticians. 35-37 - Patricia Kosseim, Daryl Pullman, Astrid Perrot-Daley, Kathy Hodgkinson, Catherine Street, Proton Rahman:
Privacy protection and public goods: building a genetic database for health research in Newfoundland and Labrador. 38-43 - Juhee Kwon, M. Eric Johnson:
Security practices and regulatory compliance in the healthcare industry. 44-51 - Daniel Fabbri, Kristen LeFevre:
Explaining accesses to electronic medical records using diagnosis information. 52-60 - Ryen White, Eric Horvitz:
From web search to healthcare utilization: privacy-sensitive studies from mobile data. 61-68 - Christopher A. Cassa, Rachel A. Miller, Kenneth D. Mandl:
A novel, privacy-preserving cryptographic approach for sharing sequencing data. 69-76 - Óscar Ferrández, Brett R. South, Shuying Shen, F. Jeffrey Friedlin, Matthew H. Samore, Stéphane M. Meystre:
BoB, a best-of-breed automated text de-identification system for VHA clinical documents. 77-83 - Louise Deléger, Katalin Molnár, Guergana Savova, Fei Xia, Todd Lingren, Qi Li, Keith Marsolo, Anil G. Jegga, Megan Kaiser, Laura Stoutenborough, Imre Solti:
Large-scale evaluation of automated clinical note de-identification and its impact on information extraction. 84-94 - Ravi V. Atreya, Joshua C. Smith, Allison B. McCoy, Bradley A. Malin, Randolph A. Miller:
Reducing patient re-identification risk for laboratory results within research datasets. 95-101 - Cynthia Dwork, Rebecca Pottenger:
Toward practicing privacy. 102-108 - James J. Gardner, Li Xiong, Yonghui Xiao, Jingjing Gao, Andrew R. Post, Xiaoqian Jiang, Lucila Ohno-Machado:
SHARE: system design and case studies for statistical health information release. 109-116
- George Hripcsak, David J. Albers:
Next-generation phenotyping of electronic health records. 117-121 - Keith Marsolo:
Informatics and operations - let's get integrated. 122-124 - Daniela M. Witten, Robert Tibshirani:
Scientific research in the age of omics: the good, the bad, and the sloppy. 125-127 - Toni R. Farley, Jeff Kiefer, Preston Lee, Daniel Von Hoff, Jeffrey M. Trent, Charles J. Colbourn, Spyro Mousses:
The BioIntelligence Framework: a new computational platform for biomedical knowledge computing. 128-133 - Caitlin M. Cusack, George Hripcsak, Meryl Bloomrosen, S. Trent Rosenbloom, Charlotte A. Weaver, Adam Wright, David K. Vawdrey, Jim Walker, Lena Mamykina:
The future state of clinical data capture and documentation: a report from AMIA's 2011 Policy Meeting. 134-140 - Kenneth W. Goodman, Samantha A. Adams, Eta S. Berner, Peter J. Embí, Robert C. Hsiung, John F. Hurdle, Dixie A. Jones, Christoph U. Lehmann, Sarah A. Maulden, Carolyn Petersen, Enrique Terrazas, Peter Winkelstein:
AMIA's Code of Professional and Ethical Conduct. 141-143 - Nicole Gray Weiskopf, Chunhua Weng:
Methods and dimensions of electronic health record data quality assessment: enabling reuse for clinical research. 144-151 - Jessica S. Ancker, Michael D. Silver, Melissa C. Miller, Rainu Kaushal:
Consumer experience with and attitudes toward health information technology: a nationwide survey. 152-156 - Yaorong Ge, David K. Ahn, Bhagyashree Unde, H. Donald Gage, John Jeffrey Carr:
Patient-controlled sharing of medical imaging data across unaffiliated healthcare organizations. 157-163 - John F. Hurdle, Stephen C. Haroldsen, Andrew Hammer, Cindy Spigle, Alison M. Fraser, Geraldine P. Mineau, Samir J. Courdy:
Identifying clinical/translational research cohorts: ascertainment via querying an integrated multi-source database. 164-171 - Marc D. Natter, Justin Quan, David M. Ortiz, Athos Bousvaros, Norman T. Ilowite, Christi J. Inman, Keith Marsolo, Andrew J. McMurry, Christy Sandborg, Laura E. Schanberg, Carol A. Wallace, Robert W. Warren, Griffin M. Weber, Kenneth D. Mandl:
An i2b2-based, generalizable, open source, self-scaling chronic disease registry. 172-179 - David Cumin, Vanessa Newton-Wade, Michael J. Harrison, Alan F. Merry:
Two open access, high-quality datasets from anesthetic records. 180-183 - Paul Avillach, Preciosa M. Coloma, Rosa Gini, Martijn J. Schuemie, Fleur Mougin, Jean-Charles Dufour, Giampiero Mazzaglia, Carlo Giaquinto, Carla Fornari, Ron Herings, Mariam Molokhia, Lars Pedersen, Annie Fourrier-Réglat, Marius Fieschi, Miriam C. J. M. Sturkenboom, Johan van der Lei, Antoine Pariente, Gianluca Trifirò:
Harmonization process for the identification of medical events in eight European healthcare databases: the experience from the EU-ADR project. 184-192 - Stephen G. Jones, Steven Coulter, William Conner:
Using administrative medical claims data to supplement state disease registry systems for reporting zoonotic infections. 193-198 - Kensaku Kawamoto, Tonya Hongsermeier, Adam Wright, Janet Lewis, Douglas S. Bell, Blackford Middleton:
Key principles for a national clinical decision support knowledge sharing framework: synthesis of insights from leading subject matter experts. 199-207
- Kevin M. Fickenscher:
President's column: An AMIA update - new directions and new opportunities. 208-210
Volume 20, Number 2, March 2013
- Lucila Ohno-Machado:
Informatics that works for you. 211
- Thomas H. Payne, David W. Bates, Eta S. Berner, Elmer V. Bernstam, H. Dominic Covvey, Mark E. Frisse, Thomas Graf, Robert A. Greenes, Edward P. Hoffer, Gilad J. Kuperman, Harold P. Lehmann, Louise Liang, Blackford Middleton, Gilbert S. Omenn, Judy G. Ozbolt:
Healthcare information technology and economics. 212-217 - Howard R. Strasberg, Guilherme Del Fiol, James J. Cimino:
Terminology challenges implementing the HL7 context-aware knowledge retrieval ('Infobutton') standard. 218-223 - Charles P. Friedman:
What informatics is and isn't. 224-226
- Joshua R. Vest, Jangho Yoon, Brian H. Bossak:
Changes to the electronic health records market in light of health information technology certification and meaningful use. 227-232 - Christopher A. Harle, Timothy R. Huerta, Eric W. Ford, Mark L. Diana, Nir Menachemi:
Overcoming challenges to achieving meaningful use: insights from hospitals that successfully received Centers for Medicare and Medicaid Services payments in 2011. 233-237 - Juan Eugenio Hernández-Ávila, Lina Sofia Palacio-Mejía, Agustín Lara-Esqueda, Eva Silvestre, Marcela Agudelo-Botero, Mark L. Diana, David R. Hotchkiss, Beatriz Plaza, Alicia Sanchez Parbul:
Assessing the process of designing and implementing electronic health records in a statewide public health system: the case of Colima, Mexico. 238-244 - Gail M. Keenan, Elizabeth Yakel, Karen Dunn Lopez, Dana Tschannen, Yvonne B. Ford:
Challenges to nurses' efforts of retrieving, documenting, and communicating patient care information. 245-251 - Peter Hoonakker, Pascale Carayon, Roger L. Brown, Randi S. Cartmill, Tosha B. Wetterneck, James M. Walker:
Changes in end-user satisfaction with Computerized Provider Order Entry over time among nurses and providers in intensive care units. 252-259 - Brian Hilligoss, Kai Zheng:
Chart biopsy: an emerging medical practice enabled by electronic health records and its impacts on emergency department-inpatient admission handoffs. 260-267 - Namita L. Tundia, Christina M. L. Kelton, Teresa M. Cavanaugh, Jeff J. Guo, Dennis J. Hanseman, Pamela C. Heaton:
The effect of electronic medical record system sophistication on preventive healthcare for women. 268-276 - Sara J. Czaja, Joseph Sharit, Chin Chin Lee, Sankaran Nair, Mario A. Hernández, Neysarí Arana, Shih Hua Fu:
Factors influencing use of an e-health website in a community sample of older adults. 277-284 - Mehmet Kuzu, Murat Kantarcioglu, Elizabeth Ashley Durham, Csaba Tóth, Bradley A. Malin:
A practical approach to achieve private medical record linkage in light of public resources. 285-292 - Christian Zunner, Thomas Bürkle, Hans-Ulrich Prokosch, Thomas Ganslandt:
Mapping local laboratory interface terms to LOINC at a German university hospital using RELMA V.5: a semi-automated approach. 293-297 - Ricardo Sánchez-de-Madariaga, Adolfo Muñoz Carrero, Jesús Cáceres Tello, Roberto Somolinos, Mario Pascual Carrasco, Ignacio Martínez, Carlos Hernández Salvador, Jose Luis Monteagudo:
ccML, a new mark-up language to improve ISO/EN 13606-based electronic health record extracts practical edition. 298-304
- Jason S. Adelman, Gary E. Kalkut, Clyde B. Schechter, Jeffrey M. Weiss, Matthew A. Berger, Stan H. Reissman, Hillel W. Cohen, Stephen J. Lorenzen, Daniel A. Burack, William N. Southern:
Understanding and preventing wrong-patient electronic orders: a randomized controlled trial. 305-310 - Aaron E. Carroll, Paul G. Biondich, Vibha Anand, Tamara M. Dugan, Stephen M. Downs:
A randomized controlled trial of screening for maternal depression with a clinical decision support system. 311-316 - Arch G. Mainous III, Carol A. Lambourne, Paul J. Nietert:
Impact of a clinical decision support system on antibiotic prescribing for acute respiratory infections in primary care: quasi-experimental trial. 317-324 - Torbjørn Torsvik, Børge Lillebo, Gustav Mikkelsen:
Presentation of clinical laboratory results: an experimental comparison of four visualization techniques. 325-331 - David A. Hanauer, Naren Ramakrishnan:
Modeling temporal relationships in large scale clinical associations. 332-341 - David Carrell, Bradley A. Malin, John S. Aberdeen, Samuel Bayer, Cheryl Clark, Ben Wellner, Lynette Hirschman:
Hiding in plain sight: use of realistic surrogates to reduce exposure of protected health information in clinical text. 342-348 - Justin A. Strauss, Chun R. Chao, Marilyn L. Kwan, Syed A. Ahmed, Joanne E. Schottinger, Virginia P. Quinn:
Identifying primary and recurrent cancers using a SAS-based natural language processing algorithm. 349-355 - Prateek Jindal, Dan Roth:
Using domain knowledge and domain-inspired discourse model for coreference resolution for clinical narratives. 356-362 - Nancy L. Wilczynski, K. Ann McKibbon, Stephen D. Walter, Amit X. Garg, R. Brian Haynes:
MEDLINE clinical queries are robust when searching in recent publishing years. 363-368
- Jeroen S. de Bruin, Klaus-Peter Adlassnig, Alexander Blacky, Harald Mandl, Karsten Fehre, Walter Koller:
Effectiveness of an automated surveillance system for intensive care unit-acquired infections. 369-372 - Carlos Francisco Ríos-Bedoya, Casey Hay:
Feasibility of using text messaging for unhealthy behaviors screening in a clinical setting: a case study on adolescent hazardous alcohol use. 373-376
- Ruchi Tiwari, Demetra S. Tsapepas, Jaclyn T. Powell, Spencer T. Martin:
Enhancements in healthcare information technology systems: customizing vendor-supplied clinical decision support for a high-risk patient population. 377-380 - Melchor Sánchez-Mendiola, Adrián I. Martínez-Franco, Argelia Rosales-Vega, Joel Villamar-Chulin, Florina Gatica-Lara, Rocío García-Durán, Adrián Martínez-González:
Development and implementation of a biomedical informatics course for medical students: challenges of a large-scale blended-learning program. 381-387
- Brandon M. Welch, Kensaku Kawamoto:
Clinical decision support for genetically guided personalized medicine: a systematic review. 388-400
- Kevin M. Fickenscher:
President's column: AMIA - Expanding and Extending Our Reach. 401-402
Volume 20, Number 3, May 2013
- Lucila Ohno-Machado:
Health surveillance using the internet and other sources of information. 403
- Ryen W. White, Nicholas P. Tatonetti, Nigam H. Shah, Russ B. Altman, Eric Horvitz:
Web-scale pharmacovigilance: listening to signals from the crowd. 404-408 - Matthias Samwald, Klaus-Peter Adlassnig:
Pharmacogenomics in the pocket of every patient? A prototype based on quick response codes. 409-412
- Rave Harpaz, Santiago Vilar, William DuMouchel, Hojjat Salmasian, Krystl Haerian, Nigam H. Shah, Herbert S. Chase, Carol Friedman:
Combing signals from spontaneous reports and electronic health records for detection of adverse drug reactions. 413-419 - Mei Liu, Eugenia Renne McPeek Hinz, Michael Edwin Matheny, Joshua C. Denny, Jonathan Scott Schildcrout, Randolph A. Miller, Hua Xu:
Comparative analysis of pharmacovigilance methods in the detection of adverse drug reactions using electronic medical records. 420-426 - Marco F. Cusumano-Towner, Daniel Y. Li, Shanshan Tuo, Gomathi Krishnan, David M. Maslove:
A social network of hospital acquired infection built from electronic medical record data. 427-434 - Karen Elizabeth Cheng, David J. Crary, Jaideep Ray, Cosmin Safta:
Structural models used in real-time biosurveillance outbreak detection and outbreak curve isolation from noisy background morbidity levels. 435-440 - Reena Mahajan, Anne C. Moorman, Stephen J. Liu, Loralee Rupp, R. Monina Klevens:
Use of the International Classification of Diseases, 9th revision, coding in identifying chronic hepatitis B virus infection in health system data: implications for national surveillance. 441-445 - Paul Avillach, Jean-Charles Dufour, Gayo Diallo, Francesco Salvo, Michel Joubert, Frantz Thiessard, Fleur Mougin, Gianluca Trifirò, Annie Fourrier-Réglat, Antoine Pariente, Marius Fieschi:
Design and validation of an automated method to detect known adverse drug reactions in MEDLINE: a contribution from the EU-ADR project. 446-452 - Khaled El Emam, Saeed Samet, Luk Arbuckle, Robyn Tamblyn, Craig Earle, Murat Kantarcioglu:
A secure distributed logistic regression protocol for the detection of rare adverse drug events. 453-461 - Noman Mohammed, Xiaoqian Jiang, Rui Chen, Benjamin C. M. Fung, Lucila Ohno-Machado:
Privacy-preserving heterogeneous health data sharing. 462-469 - David C. Radley, Melanie R. Wasserman, Lauren E. W. Olsho, Sarah J. Shoemaker, Mark Spranca, Bethany Bradshaw:
Reduction in medication errors in hospitals due to adoption of computerized provider order entry systems. 470-476 - William L. Galanter, Suzanne Falck, Matthew Burns, Marci Laragh, Bruce L. Lambert:
Indication-based prescribing prevents wrong-patient medication errors in computerized provider order entry (CPOE). 477-481 - Kin Wah Fung, Chiang S. Jao, Dina Demner-Fushman:
Extracting drug indication information from structured product labels using natural language processing. 482-488 - Shobha Phansalkar, Heleen van der Sijs, Alisha D. Tucker, Amrita A. Desai, Douglas S. Bell, Jonathan M. Teich, Blackford Middleton, David W. Bates:
Drug-drug interactions that should be non-interruptive in order to reduce alert fatigue in electronic health records. 489-493 - Jon D. Duke, Xiaochun Li, Paul R. Dexter:
Adherence to drug-drug interaction alerts in high-risk patients: a trial of context-enhanced alerting. 494-498 - Margaret V. McDonald, Timothy R. Peng, Sridevi Sridharan, Janice B. Foust, Polina Kogan, Liliana E. Pezzin, Penny H. Feldman:
Automating the medication regimen complexity index. 499-505 - Mei-Sing Ong, Farah Magrabi, Enrico W. Coiera:
Syndromic surveillance for health information system failures: a feasibility study. 506-512 - Gabrielle M. Turner-McGrievy, Michael W. Beets, Justin B. Moore, Andrew T. Kaczynski, Daheia J. Barr-Anderson, Deborah F. Tate:
Comparison of traditional versus mobile app self-monitoring of physical activity and dietary intake among overweight adults participating in an mHealth weight loss program. 513-518 - Ashley E. Wade-Vuturo, Lindsay Satterwhite Mayberry, Chandra Y. Osborn:
Secure messaging and diabetes management: experiences and perspectives of patient portal users. 519-525 - Paul C. Tang, J. Marc Overhage, Albert Solomon Chan, Nancy L. Brown, Bahar Aghighi, Martin P. Entwistle, Siu Lui Hui, Shauna M. Hyde, Linda H. Klieman, Charlotte J. Mitchell, Anthony J. Perkins, Lubna Qureshi, Tanya A. Waltimyer, Leigha J. Winters, Charles Y. Young:
Online disease management of diabetes: Engaging and Motivating Patients Online With Enhanced Resources-Diabetes (EMPOWER-D), a randomized controlled trial. 526-534 - Mathias Kaspar, Nigel M. Parsad, Jonathan C. Silverstein:
An optimized web-based approach for collaborative stereoscopic medical visualization. 535-543 - David M. Maslove, Tanya Podchiyska, Henry J. Lowe:
Discretization of continuous features in clinical datasets. 544-553 - Cui Tao, Guoqian Jiang, Thomas A. Oniki, Robert R. Freimuth, Qian Zhu, Deepak K. Sharma, Jyotishman Pathak, Stanley M. Huff, Christopher G. Chute:
A semantic-web oriented representation of the clinical element model for secondary use of electronic health records data. 554-562
- Gregory William Hruby, James McKiernan, Suzanne Bakken, Chunhua Weng:
A centralized research data repository enhances retrospective outcomes research capacity: a case report. 563-567
- Erin Mathieu, Kevin McGeechan, Alexandra Barratt, Robert Herbert:
Internet-based randomized controlled trials: a systematic review. 568-576 - Brian E. Dixon, Roland E. Gamache, Shaun J. Grannis:
Towards public health decision support: a systematic review of bidirectional communication approaches. 577-583 - Judy Reed Edworthy:
Medical audible alarms: a review. 584-589
- Kyna McCullough Gooden, Xianying Pan, Hugh Kawabata, Jean-Marie Heim:
Correspondence: Use of an algorithm for identifying hidden drug-drug interactions in adverse event reports. 590 - Nicholas P. Tatonetti, Joshua C. Denny, Russ B. Altman:
Correspondence: Response to 'Use of an algorithm for identifying hidden drug-drug interactions in adverse event reports' by Gooden et al. 591
- Kevin M. Fickenscher:
President's column: interoperability - the 30% solution: from dialog and rhetoric to reality. 593-594
Volume 20, Number 4, July 2013
- Atul J. Butte, Lucila Ohno-Machado:
Making it personal: translational bioinformatics. 595-596
- Simon Papillon-Cavanagh, Nicolas De Jay, Nehme Hachem, Catharina Olsen, Gianluca Bontempi, Hugo J. W. L. Aerts, John Quackenbush, Benjamin Haibe-Kains:
Research and applications: Comparison and validation of genomic predictors for anticancer drug sensitivity. 597-602 - Ryan J. Urbanowicz, Angeline S. Andrew, Margaret R. Karagas, Jason H. Moore:
Research and applications: Role of genetic heterogeneity and epistasis in bladder cancer susceptibility and outcome: a learning classifier system approach. 603-612 - Juhyeon Kim, Hyunjung Shin:
Research and applications: Breast cancer survivability prediction using labeled, unlabeled, and pseudo-labeled patient data. 613-618 - Younghee Lee, Haiquan Li, Jianrong Li, Ellen Rebman, Ikbel Achour, Kelly Regan, Eric R. Gamazon, James L. Chen, Xinan Holly Yang, Nancy J. Cox, Yves A. Lussier:
Research and applications: Network models of genome-wide association studies uncover the topological centrality of protein interactions in complex diseases. 619-629 - Ting Hu, Yuanzhu Peter Chen, Jeff Kiralis, Ryan L. Collins, Christian Wejse, Giorgio Sirugo, Scott M. Williams, Jason H. Moore:
Research and applications: An information-gain approach to detecting three-way epistatic interactions in genetic association studies. 630-636 - Je-Gun Joung, Do Kyoon Kim, Kyung-Hwa Kim, Ju Han Kim:
Research and applications: Extracting coordinated patterns of DNA methylation and gene expression in ovarian cancer. 637-642 - Zhe Zhang, Shawn Witham, Marharita Petukh, Gautier Moroy, Maria A. Miteva, Yoshihiko Ikeguchi, Emil Alexov:
Research and applications: A rational free energy-based approach to understanding and targeting disease-causing missense mutations. 643-651 - Laura K. Wiley, Anushi Shah, Hua Xu, William S. Bush:
Research and applications: ICD-9 tobacco use codes are effective identifiers of smoking status. 652-658 - Zhenshu Wen, Zhi-Ping Liu, Zhengrong Liu, Yan Zhang, Luonan Chen:
Research and applications: An integrated approach to identify causal network modules of complex diseases with application to colorectal cancer. 659-667 - Vivekanand Sharma, Indra Neil Sarkar:
Research and applications: Leveraging biodiversity knowledge for potential phyto-therapeutic applications. 668-679 - Chao Wang, Thierry Pécot, Debra L. Zynger, Raghu Machiraju, Charles L. Shapiro, Kun Huang:
Research and applications: Identifying survival associated morphological features of triple negative breast cancer using multiple datasets. 680-687