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ORCIDAnna Tramontano
Person information
- affiliation: Sapienza University of Rome, Italy
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2010 – 2019
- 2017
[j31]Rosalba Lepore
, Pier Paolo Olimpieri, Mario Abdel Messih, Anna Tramontano:
PIGSPro: prediction of immunoGlobulin structures v2. Nucleic Acids Res. 45(Webserver-Issue): W17-W23 (2017)- 2016
- [j30]Edoardo Milanetti, Domenico Raimondo, Anna Tramontano:
Prediction of the permeability of neutral drugs inferred from their solvation properties. Bioinform. 32(8): 1163-1169 (2016) - [j29]Agnieszka Obarska-Kosinska, Alfredo Iacoangeli, Rosalba Lepore, Anna Tramontano:
PepComposer: computational design of peptides binding to a given protein surface. Nucleic Acids Res. 44(Webserver-Issue): W522-W528 (2016) - 2015
- [j28]Pier Paolo Olimpieri, Paolo Marcatili, Anna Tramontano:
Tabhu: tools for antibody humanization. Bioinform. 31(3): 434-435 (2015) - [j27]Loredana Le Pera, Mariagiovanna Mazzapioda, Anna Tramontano:
3USS: a web server for detecting alternative 3′UTRs from RNA-seq experiments. Bioinform. 31(11): 1845-1847 (2015) - [j26]Mario Abdel Messih, Rosalba Lepore, Anna Tramontano:
LoopIng: a template-based tool for predicting the structure of protein loops. Bioinform. 31(23): 3767-3772 (2015) - 2014
- [j25]Mario Abdel Messih, Rosalba Lepore, Paolo Marcatili, Anna Tramontano:
Improving the accuracy of the structure prediction of the third hypervariable loop of the heavy chains of antibodies. Bioinform. 30(19): 2733-2740 (2014) - 2013
- [j24]Jan Kosinski, Alessandro Barbato, Anna Tramontano:
MODexplorer: an integrated tool for exploring protein sequence, structure and function relationships. Bioinform. 29(7): 953-954 (2013) - [j23]Rosalba Lepore, Anna Tramontano, Allegra Via:
TiPs: a database of therapeutic targets in pathogens and associated tools. Bioinform. 29(14): 1821-1822 (2013) - [j22]Pier Paolo Olimpieri, Anna Chailyan, Anna Tramontano, Paolo Marcatili:
Prediction of site-specific interactions in antibody-antigen complexes: the proABC method and server. Bioinform. 29(18): 2285-2291 (2013) - [j21]Silvia Bottini, Andrea Bernini, Matteo De Chiara, Diego Garlaschelli, Ottavia Spiga, Marco Dioguardi, Elisa Vannuccini, Anna Tramontano, Neri Niccolai:
ProCoCoA: A quantitative approach for analyzing protein core composition. Comput. Biol. Chem. 43: 29-34 (2013) - [j20]Daniel D'Andrea, Luigi Grassi, Mariagiovanna Mazzapioda, Anna Tramontano:
FIDEA: a server for the functional interpretation of differential expression analysis. Nucleic Acids Res. 41(Webserver-Issue): 84-88 (2013) - 2012
- [j19]Alessandro Barbato, Pascal Benkert, Torsten Schwede, Anna Tramontano, Jan Kosinski:
Improving your target-template alignment with MODalign. Bioinform. 28(7): 1038-1039 (2012) - [j18]Daniel Carbajo, Anna Tramontano:
A resource for benchmarking the usefulness of protein structure models. BMC Bioinform. 13: 188 (2012) - [j17]Anna Chailyan, Anna Tramontano, Paolo Marcatili:
A database of immunoglobulins with integrated tools: DIGIT. Nucleic Acids Res. 40(Database-Issue): 1230-1234 (2012) - 2011
- [j16]Matteo Floris, Domenico Raimondo, Guido Leoni, Massimiliano Orsini, Paolo Marcatili, Anna Tramontano:
MAISTAS: a tool for automatic structural evaluation of alternative splicing products. Bioinform. 27(12): 1625-1629 (2011) - [j15]Rosalba Lepore, Silvia Simeoni, Domenico Raimondo, Antonia Caroli, Anna Tramontano, Allegra Via:
Identification of the Schistosoma mansoni Molecular Target for the Antimalarial Drug Artemether. J. Chem. Inf. Model. 51(11): 3005-3016 (2011) - [j14]Andreas Zanzoni, Daniel Carbajo, Francesca Diella, Pier Federico Gherardini, Anna Tramontano, Manuela Helmer-Citterich, Allegra Via:
Phospho3D 2.0: an enhanced database of three-dimensional structures of phosphorylation sites. Nucleic Acids Res. 39(Database-Issue): 268-271 (2011) - [j13]Allegra Via, Javier De Las Rivas, Teresa K. Attwood, David Landsman, Michelle D. Brazas, Jack A. M. Leunissen, Anna Tramontano, Maria Victoria Schneider:
Ten Simple Rules for Developing a Short Bioinformatics Training Course. PLoS Comput. Biol. 7(10) (2011) - 2010
- [j12]Loredana Le Pera, Paolo Marcatili, Anna Tramontano:
PICMI: mapping point mutations on genomes. Bioinform. 26(22): 2904-2905 (2010) - [j11]Emanuela Giombini, Massimiliano Orsini, Danilo Carrabino, Anna Tramontano:
An automatic method for identifying surface proteins in bacteria: SLEP. BMC Bioinform. 11: 39 (2010) - [c3]Anna Chailyan, Davide Cirillo, Paolo Marcatili, Anna Tramontano:
Structural landscape of immunoglobulin lambda light chains. BCB 2010: 651-652
2000 – 2009
- 2009
- [j10]Dan Gusfield, Anna Tramontano:
Editorial. Bioinform. 25(12) (2009) - 2008
- [j9]Paolo Marcatili, Alessandra Rosi, Anna Tramontano:
PIGS: automatic prediction of antibody structures. Bioinform. 24(17): 1953-1954 (2008) - [j8]Gabriele Ausiello, Pier Federico Gherardini, Paolo Marcatili, Anna Tramontano, Allegra Via, Manuela Helmer-Citterich:
FunClust: a web server for the identification of structural motifs in a set of non-homologous protein structures. BMC Bioinform. 9(S-2) (2008) - [j7]Paolo Marcatili, Giovanni Bussotti, Anna Tramontano:
The MoVIN server for the analysis of protein interaction networks. BMC Bioinform. 9(S-2) (2008) - [c2]Anna Tramontano:
Editorial. ECCB 2008: 1 - 2007
- [j6]Tiziana Castrignanò, Paolo D'Onorio De Meo, Danilo Carrabino, Massimiliano Orsini, Matteo Floris, Anna Tramontano:
The MEPS server for identifying protein conformational epitopes. BMC Bioinform. 8(S-1) (2007) - 2006
- [j5]Marialuisa Pellegrini-Calace, Anna Tramontano:
Identification of a novel putative mitogen-activated kinase cascade on human chromosome 21 by computational approaches. Bioinform. 22(7): 775-778 (2006) - [j4]Michael L. Tress, Domenico Cozzetto, Anna Tramontano, Alfonso Valencia:
An analysis of the Sargasso Sea resource and the consequences for database composition. BMC Bioinform. 7: 213 (2006) - [j3]Tiziana Castrignanò, Paolo D'Onorio De Meo, Domenico Cozzetto, Ivano Giuseppe Talamo, Anna Tramontano:
The PMDB Protein Model Database. Nucleic Acids Res. 34(Database-Issue): 306-309 (2006) - 2005
- [c1]Alejandro Giorgetti, Domenico Raimondo, Adriana Erica Miele, Anna Tramontano:
Evaluating the usefulness of protein structure models for molecular replacement. ECCB/JBI 2005: 76 - 2003
- [j2]Ioannis Iliopoulos, Sophia Tsoka, Miguel A. Andrade, Anton J. Enright, Mark Carroll, Patrick Poullet, Vasilis J. Promponas, Theodore Liakopoulos, Giorgos Palaios, Claude Pasquier, Stavros J. Hamodrakas, Javier Tamames, Asutosh T. Yagnik, Anna Tramontano, Damien Devos, Christian Blaschke, Alfonso Valencia, David Brett, David M. A. Martin, Christophe Leroy, Isidore Rigoutsos, Chris Sander, Christos A. Ouzounis:
Evaluation of annotation strategies using an entire genome sequence. Bioinform. 19(6): 717-726 (2003)
1980 – 1989
- 1986
- [j1]Anna Tramontano, M. F. Macchiato:
Probability of coding of a DNA sequence: an algorithm to predict translated reading frames from their thermodynamic characteristics. Nucleic Acids Res. 14(1): 127-135 (1986)
Coauthor Index
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