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Publications
- 2008
[j15]Gabriele Ausiello, Pier Federico Gherardini, Paolo Marcatili
, Anna Tramontano, Allegra Via, Manuela Helmer-Citterich:
FunClust: a web server for the identification of structural motifs in a set of non-homologous protein structures. BMC Bioinform. 9(S-2) (2008)- 2007
- [j13]Gabriele Ausiello, Daniele Peluso, Allegra Via, Manuela Helmer-Citterich:
Local comparison of protein structures highlights cases of convergent evolution in analogous functional sites. BMC Bioinform. 8(S-1) (2007) - [j12]Allegra Via, Pier Federico Gherardini, Enrico Ferraro, Gabriele Ausiello, Gianpaolo Scalia Tomba, Manuela Helmer-Citterich:
False occurrences of functional motifs in protein sequences highlight evolutionary constraints. BMC Bioinform. 8 (2007) - [j11]Andreas Zanzoni, Gabriele Ausiello, Allegra Via, Pier Federico Gherardini, Manuela Helmer-Citterich:
Phospho3D: a database of three-dimensional structures of protein phosphorylation sites. Nucleic Acids Res. 35(Database-Issue): 229-231 (2007) - [j10]Allegra Via, Daniele Peluso, Pier Federico Gherardini, Emanuele de Rinaldis, Teresa Colombo, Gabriele Ausiello, Manuela Helmer-Citterich:
3dLOGO: a web server for the identification, analysis and use of conserved protein substructures. Nucleic Acids Res. 35(Web-Server-Issue): 416-419 (2007) - [j9]Enrico Ferraro, Daniele Peluso, Allegra Via, Gabriele Ausiello, Manuela Helmer-Citterich:
SH3-Hunter: discovery of SH3 domain interaction sites in proteins. Nucleic Acids Res. 35(Web-Server-Issue): 451-454 (2007) - 2006
- [j8]Enrico Ferraro, Allegra Via, Gabriele Ausiello, Manuela Helmer-Citterich:
A novel structure-based encoding for machine-learning applied to the inference of SH3 domain specificity. Bioinform. 22(19): 2333-2339 (2006) - 2005
- [j6]Gabriele Ausiello, Allegra Via, Manuela Helmer-Citterich:
Query3d: a new method for high-throughput analysis of functional residues in protein structures. BMC Bioinform. 6(S-4) (2005) - [j5]Enrico Ferraro, Allegra Via, Gabriele Ausiello, Manuela Helmer-Citterich:
A neural strategy for the inference of SH3 domain-peptide interaction specificity. BMC Bioinform. 6(S-4) (2005) - [j4]Gabriele Ausiello, Andreas Zanzoni, Daniele Peluso, Allegra Via, Manuela Helmer-Citterich:
pdbFun: mass selection and fast comparison of annotated PDB residues. Nucleic Acids Res. 33(Web-Server-Issue): 133-137 (2005) - 2003
- [j1]Pål Puntervoll, Rune Linding, Christine Gemünd, Sophie Chabanis-Davidson, Morten Mattingsdal, Scott Cameron, David M. A. Martin, Gabriele Ausiello, Barbara Brannetti, Anna Costantini, Fabrizio Ferrè, Vincenza Maselli, Allegra Via, Gianni Cesareni, Francesca Diella, Giulio Superti-Furga, Lucjan Stanislaw Wyrwicz, Chenna Ramu, Caroline McGuigan, Rambabu Gudavalli, Ivica Letunic, Peer Bork, Leszek Rychlewski, Bernhard Küster, Manuela Helmer-Citterich, William N. Hunter, Rein Aasland, Toby J. Gibson:
ELM server: a new resource for investigating short functional sites in modular eukaryotic proteins. Nucleic Acids Res. 31(13): 3625-3630 (2003)
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