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2020 – today
- 2022
[j12]Hitoshi Ishikawa, Hiroshi Mori, Koichi Higashi, Yoshiaki Kato, Tomofumi Sakai, Toshikazu Ebisuzaki, Ken Kurokawa:
PZLAST: an ultra-fast sequence similarity search tool implemented on a MIMD processor. Int. J. Netw. Comput. 12(2): 446-466 (2022)- 2021
- [j11]Hiroshi Mori
, Hitoshi Ishikawa, Koichi Higashi, Yoshiaki Kato, Toshikazu Ebisuzaki, Ken Kurokawa:
PZLAST: an ultra-fast amino acid sequence similarity search server against public metagenomes. Bioinform. 37(21): 3944-3946 (2021) - [j10]Ryota Sugimoto, Luca Nishimura, Phuong Thanh Nguyen, Jumpei Ito, Nicholas F. Parrish, Hiroshi Mori, Ken Kurokawa, Hirofumi Nakaoka, Ituro Inoue:
Comprehensive discovery of CRISPR-targeted terminally redundant sequences in the human gut metagenome: Viruses, plasmids, and more. PLoS Comput. Biol. 17(10) (2021) - [c2]Hitoshi Ishikawa, Hiroshi Mori, Koichi Higashi, Yoshiaki Kato, Tomofumi Sakai, Toshikazu Ebisuzaki, Ken Kurokawa:
PZLAST: an ultra-fast sequence similarity search tool implemented on a MIMD processor. CANDAR 2021: 102-107
2010 – 2019
- 2018
- [j9]Hiroshi Mori, Takayuki Maruyama, Masahiro Yano, Takuji Yamada, Ken Kurokawa:
VITCOMIC2: visualization tool for the phylogenetic composition of microbial communities based on 16S rRNA gene amplicons and metagenomic shotgun sequencing. BMC Syst. Biol. 12(S-2): 47-58 (2018) - [j8]Koichi Higashi, Shinya Suzuki, Shin Kurosawa, Hiroshi Mori, Ken Kurokawa:
Latent environment allocation of microbial community data. PLoS Comput. Biol. 14(6) (2018) - 2015
- [j7]Tianmin Wang, Hiroshi Mori, Chong Zhang, Ken Kurokawa, Xin-Hui Xing, Takuji Yamada:
DomSign: a top-down annotation pipeline to enlarge enzyme space in the protein universe. BMC Bioinform. 16: 96:1-96:15 (2015) - 2014
- [j6]Masahiro Yano, Hiroshi Mori, Yutaka Akiyama, Takuji Yamada, Ken Kurokawa:
CLAST: CUDA implemented large-scale alignment search tool. BMC Bioinform. 15: 406 (2014) - [j5]Manimozhiyan Arumugam, Jeroen Raes, Eric Pelletier, Denis Le Paslier, Takuji Yamada, Daniel R. Mende, Gabriel R. Fernandes, Julien Tap, Thomas Brüls, Jean-Michel Batto, Marcelo Bertalan, Natalia Borruel, Francesc Casellas, Leyden Fernández, Laurent Gautier, Torben Hansen, Masahira Hattori, Tetsuya Hayashi, Michiel Kleerebezem, Ken Kurokawa, Marion Leclerc, Florence Levenez, Chaysavanh Manichanh, Henrik Bjørn Nielsen, Trine Nielsen, Nicolas Pons, Julie Poulain, Junjie Qin, Thomas Sicheritz-Pontén, Sebastian Tims, David Torrents, Edgardo Ugarte, Erwin G. Zoetendal, Jun Wang, Francisco Guarner, Oluf Pedersen, Willem M. de Vos, Søren Brunak, Joël Dore, MetaHIT consortium, Jean Weissenbach, S. Dusko Ehrlich, Peer Bork:
Addendum: Enterotypes of the human gut microbiome. Nat. 506(7489): 516 (2014) - 2010
- [j4]Hiroshi Mori, Fumito Maruyama, Ken Kurokawa:
VITCOMIC: visualization tool for taxonomic compositions of microbial communities based on 16S rRNA gene sequences. BMC Bioinform. 11: 332 (2010)
2000 – 2009
- 2007
- [j3]Hijiri Maeno, Md. Altaf-Ul-Amin, Yoko Shinbo, Ken Kurokawa, Naotake Ogasawara, Shigehiko Kanaya:
Elucidating Conservation of Genes in Multiple Genomes Based on Graphs Configured by Bidirectional Best-Hit Relationships. Inf. Media Technol. 2(1): 68-78 (2007) - [j2]Hisashi Tuji, Md. Altaf-Ul-Amin, Masanori Arita, Hirokazu Nishio, Yoko Shinbo, Ken Kurokawa, Shigehiko Kanaya:
Comparison of Protein Complexes Predicted from PPI Networks by DPClus and Newman Clustering Algorithms. Inf. Media Technol. 2(1): 98-108 (2007) - 2006
- [j1]Md. Altaf-Ul-Amin, Yoko Shinbo, Kenji Mihara, Ken Kurokawa, Shigehiko Kanaya:
Development and implementation of an algorithm for detection of protein complexes in large interaction networks. BMC Bioinform. 7: 207 (2006) - 2005
- [c1]Md. Altaf-Ul-Amin, Toshihiro Koma, Ken Kurokawa, Shigehiko Kanaya:
Prediction of Protein Functions Based on Protein-Protein Interaction Networks: A Min-Cut Approach. ICDE Workshops 2005: 1156
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