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ORCIDEwy A. Mathé
Person information
- affiliation: National Center for Advancing Translational Sciences, Rockville, MD, USA
- affiliation (former): Ohio State University, Department of Biomedical Informatics, Columbus, OH, USA
- affiliation (former): George Mason University, Laboratory of Structural Bioinformatics, Manassas, VA, USA
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Journal Articles
- 2023
[j17]John C. Braisted
, Andrew Patt, Cole Tindall, Timothy Sheils, Jorge Neyra, Kyle Spencer, Tara Eicher, Ewy A. Mathé:
RaMP-DB 2.0: a renovated knowledgebase for deriving biological and chemical insight from metabolites, proteins, and genes. Bioinform. 39(1) (2023)- [j16]Jaleal Sanjak, Jessica Binder, Arjun Singh Yadaw, Qian Zhu, Ewy A. Mathé:
Clustering rare diseases within an ontology-enriched knowledge graph. J. Am. Medical Informatics Assoc. 31(1): 154-164 (2023) - [j15]Keith J. Kelleher, Timothy Sheils, Stephen L. Mathias, Jeremy J. Yang, Vincent T. Metzger, Vishal B. Siramshetty, Dac-Trung Nguyen, Lars Juhl Jensen, Dusica Vidovic, Stephan C. Schürer, Jayme Holmes, Karlie R. Sharma, Ajay Pillai, Cristian Bologa, Jeremy S. Edwards, Ewy A. Mathé, Tudor I. Oprea:
Pharos 2023: an integrated resource for the understudied human proteome. Nucleic Acids Res. 51(D1): 1405-1416 (2023) - 2022
- [j14]Qian Zhu, Chunxu Qu, Ruizheng Liu, Gunjan Vatas, Andrew Clough, Ðac-Trung Nguyen, Eric Sid, Ewy A. Mathé, Yanji Xu:
Rare disease-based scientific annotation knowledge graph. Frontiers Artif. Intell. 5 (2022) - [j13]Gergely Zahoránszky-Köhalmi, Vishal B. Siramshetty, Praveen Kumar, Manideep Gurumurthy, Busola Grillo, Biju Mathew, Dimitrios Metaxatos, Mark Backus, Tim Mierzwa, Reid Simon, Ivan Grishagin, Laura Brovold, Ewy A. Mathé, Matthew D. Hall, Samuel G. Michael, Alexander G. Godfrey, Jordi Mestres, Lars Juhl Jensen, Tudor I. Oprea:
A Workflow of Integrated Resources to Catalyze Network Pharmacology Driven COVID-19 Research. J. Chem. Inf. Model. 62(3): 718-729 (2022) - [j12]Vishal B. Siramshetty, Ivan Grishagin, Ðac-Trung Nguyen, Tyler Peryea, Yulia Skovpen, Oleg V. Stroganov, Daniel Katzel, Timothy Sheils, Ajit Jadhav, Ewy A. Mathé, Noel Southall:
NCATS Inxight Drugs: a comprehensive and curated portal for translational research. Nucleic Acids Res. 50(D1): 1307-1316 (2022) - 2021
- [j11]Zhaoqian Liu, Anjun Ma, Ewy A. Mathé, Marlena Merling, Qin Ma, Bingqiang Liu:
Network analyses in microbiome based on high-throughput multi-omics data. Briefings Bioinform. 22(2): 1639-1655 (2021) - [j10]Tara Eicher, Jany Chan, Han Luu, Raghu Machiraju, Ewy A. Mathé:
Self-organizing maps with variable neighborhoods facilitate learning of chromatin accessibility signal shapes associated with regulatory elements. BMC Bioinform. 22(1): 35 (2021) - [j9]Timothy Sheils, Stephen L. Mathias, Keith J. Kelleher, Vishal B. Siramshetty, Dac-Trung Nguyen, Cristian Bologa, Lars Juhl Jensen, Dusica Vidovic, Amar Koleti, Stephan C. Schürer, Anna Waller, Jeremy J. Yang, Jayme Holmes, Giovanni Bocci, Noel Southall, Poorva Dharkar, Ewy A. Mathé, Anton Simeonov, Tudor I. Oprea:
TCRD and Pharos 2021: mining the human proteome for disease biology. Nucleic Acids Res. 49(Database-Issue): D1334-D1346 (2021) - 2020
- [j8]Zhongming Zhao, Yulin Dai, Chi Zhang, Ewy A. Mathé, Lai Wei, Kai Wang:
Correction to: The International Conference on Intelligent Biology and Medicine (ICIBM) 2019: bioinformatics methods and applications for human diseases. BMC Bioinform. 21(1): 148 (2020) - [j7]Xia Ning, Chi Zhang, Kai Wang, Zhongming Zhao, Ewy A. Mathé:
Correction to: The International Conference on Intelligent Biology and Medicine 2019: computational methods for drug interactions. BMC Medical Informatics Decis. Mak. 20(1): 77 (2020) - [j6]Xia Ning, Chi Zhang, Kai Wang, Zhongming Zhao, Ewy A. Mathé:
The International Conference on Intelligent Biology and Medicine 2019: computational methods for drug interactions. BMC Medical Informatics Decis. Mak. 20-S(2): 51 (2020) - 2019
- [j5]Tara Eicher, Andrew Patt, Esko Kautto, Raghu Machiraju, Ewy A. Mathé, Yan Zhang:
Challenges in proteogenomics: a comparison of analysis methods with the case study of the DREAM proteogenomics sub-challenge. BMC Bioinform. 20-S(24): 669 (2019) - [j4]Zhongming Zhao, Yulin Dai, Chi Zhang, Ewy A. Mathé, Lai Wei, Kai Wang:
The International Conference on Intelligent Biology and Medicine (ICIBM) 2019: bioinformatics methods and applications for human diseases. BMC Bioinform. 20-S(24): 676 (2019) - 2018
- [j3]Jalal K. Siddiqui, Elizabeth Baskin, Mingrui Liu, Carmen Z. Cantemir-Stone, Bofei Zhang, Russell Bonneville, Joseph P. McElroy, Kevin R. Coombes, Ewy A. Mathé:
IntLIM: integration using linear models of metabolomics and gene expression data. BMC Bioinform. 19(1): 81:1-81:12 (2018) - 2017
- [j2]Elizabeth Baskin, Rick Farouni, Ewy A. Mathé:
ALTRE: workflow for defining ALTered Regulatory Elements using chromatin accessibility data. Bioinform. 33(5): 740-742 (2017) - [j1]Elizabeth Baskin, Rick Farouni, Ewy A. Mathé:
ALTRE: workflow for defining ALTered regulatory elements using chromatin accessibility data. Bioinform. 33(16): 2609 (2017)
Conference and Workshop Papers
- 2024
- [c4]Sungrim Moon, Jessica Maine, Ewy A. Mathé, Qian Zhu:
Aligning Orphanet Classification to Identify Disease Characteristics among Rare Disease Clusters. BIBM 2024: 4561-4563 - 2023
- [c3]Jeremy Parker Yang, Devon Leadman, Richard M. Ballew, Eric Sid, Yanji Xu, Ewy A. Mathé, Qian Zhu:
User Centered Rare Disease Clinical Trial Knowledge Graph (RCTKG). MedInfo 2023: 94-98 - 2021
- [c2]Qian Zhu, Ruizheng Liu, Gunjan Vatas, Andrew Clough, Yanji Xu, Dac-Trung Nguyen, Ewy A. Mathé, Eric Sid:
Scientific Evidence Based Knowledge Graph in Rare Diseases. BIBM 2021: 2614-2617 - 2008
- [c1]Majid Masso, Ewy A. Mathé, Nida Parvez, Kahkeshan Hijazi, Iosif I. Vaisman:
Structure Based Functional Analysis of Bacteriophage f1 Gene V Protein. BIBM 2008: 402-406
Editorship
- 2016
- [e1]Ewy A. Mathé, Sean R. Davis:
Statistical Genomics - Methods and Protocols. Methods in Molecular Biology 1418, Springer 2016, ISBN 978-1-4939-3576-5 [contents]
Informal and Other Publications
- 2024
- [i3]Timothy M. D. Ebbels, Soha Hassoun, Ewy A. Mathé, Justin J. J. van der Hooft, Haley Chatelaine:
Computational Metabolomics: Towards Molecules, Models, and their Meaning (Dagstuhl Seminar 24181). Dagstuhl Reports 14(4): 124-141 (2024) - 2022
- [i2]Corey Broeckling, Timothy M. D. Ebbels, Ewy A. Mathé, Nicola Zamboni, Cecilia Wieder:
Computational Metabolomics: From Spectra to Knowledge (Dagstuhl Seminar 22181). Dagstuhl Reports 12(5): 1-16 (2022) - 2018
- [i1]Ewy A. Mathé, Ben Busby, Helen Piontkivska, Team of Developers:
Matchmaking in Bioinformatics. F1000Research 7: 171 (2018)
Coauthor Index
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