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ORCIDMarta Szachniuk
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- affiliation: Poznan University of Technology, Poland
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2020 – today
- 2023
[j31]Marek Justyna
, Maciej Antczak, Marta Szachniuk:
Machine learning for RNA 2D structure prediction benchmarked on experimental data. Briefings Bioinform. 24(3) (2023)- [j30]Michal Zurkowski, Maciej Antczak, Marta Szachniuk:
High-quality, customizable heuristics for RNA 3D structure alignment. Bioinform. 39(5) (2023) - [j29]Bartosz Adamczyk, Michal Zurkowski, Marta Szachniuk, Tomasz Zok:
WebTetrado: a webserver to explore quadruplexes in nucleic acid 3D structures. Nucleic Acids Res. 51(W1): 607-612 (2023) - 2022
- [j28]Bartosz Adamczyk, Maciej Antczak, Marta Szachniuk:
RNAsolo: a repository of cleaned PDB-derived RNA 3D structures. Bioinform. 38(14): 3668-3670 (2022) - [j27]Michal Zurkowski, Tomasz Zok, Marta Szachniuk:
DrawTetrado to create layer diagrams of G4 structures. Bioinform. 38(15): 3835-3836 (2022) - [j26]Jakub Wiedemann, Jacek Kaczor, Maciej Milostan, Tomasz Zok, Jacek Blazewicz, Marta Szachniuk, Maciej Antczak:
RNAloops: a database of RNA multiloops. Bioinform. 38(17): 4200-4205 (2022) - [j25]Tomasz Zok, Natalia Kraszewska, Joanna Miskiewicz, Paulina Pielacinska, Michal Zurkowski, Marta Szachniuk:
ONQUADRO: a database of experimentally determined quadruplex structures. Nucleic Acids Res. 50(D1): 253-258 (2022) - [j24]Kamil Luwanski, Vladyslav Hlushchenko, Mariusz Popenda, Tomasz Zok, Joanna Sarzynska, Daniil Martsich, Marta Szachniuk, Maciej Antczak:
RNAspider: a webserver to analyze entanglements in RNA 3D structures. Nucleic Acids Res. 50(W1): 663-669 (2022) - 2021
- [j23]Joanna Miskiewicz, Joanna Sarzynska, Marta Szachniuk:
How bioinformatics resources work with G4 RNAs. Briefings Bioinform. 22(3) (2021) - [j22]Mateusz Kudla, Kaja Gutowska, Jaroslaw Synak, Mirko Weber, Katrin Sophie Bohnsack, Piotr Lukasiak, Thomas Villmann, Jacek Blazewicz, Marta Szachniuk:
Virxicon: a lexicon of viral sequences. Bioinform. 36(22-23): 5507-5513 (2021) - 2020
- [j21]Mariusz Popenda, Joanna Miskiewicz, Joanna Sarzynska, Tomasz Zok, Marta Szachniuk:
Topology-based classification of tetrads and quadruplex structures. Bioinform. 36(4): 1129-1134 (2020) - [j20]Tomasz Zok, Mariusz Popenda, Marta Szachniuk:
ElTetrado: a tool for identification and classification of tetrads and quadruplexes. BMC Bioinform. 21(1): 40 (2020)
2010 – 2019
- 2019
- [j19]Maciej Antczak, Marcin Zablocki, Tomasz Zok, Agnieszka Rybarczyk, Jacek Blazewicz, Marta Szachniuk:
RNAvista: a webserver to assess RNA secondary structures with non-canonical base pairs. Bioinform. 35(1): 152-155 (2019) - 2018
- [j18]Maciej Antczak, Mariusz Popenda, Tomasz Zok, Michal Zurkowski, Ryszard W. Adamiak, Marta Szachniuk:
New algorithms to represent complex pseudoknotted RNA structures in dot-bracket notation. Bioinform. 34(8): 1304-1312 (2018) - [j17]Maciej Antczak, Tomasz Zok, Maciej Osowiecki, Mariusz Popenda, Ryszard W. Adamiak, Marta Szachniuk:
RNAfitme: a webserver for modeling nucleobase and nucleoside residue conformation in fixed-backbone RNA structures. BMC Bioinform. 19(1): 304:1-304:11 (2018) - [j16]Tomasz Zok, Maciej Antczak, Michal Zurkowski, Mariusz Popenda, Jacek Blazewicz, Ryszard W. Adamiak, Marta Szachniuk:
RNApdbee 2.0: multifunctional tool for RNA structure annotation. Nucleic Acids Res. 46(Webserver-Issue): W30-W35 (2018) - 2017
- [j15]Jakub Wiedemann, Tomasz Zok, Maciej Milostan, Marta Szachniuk:
LCS-TA to identify similar fragments in RNA 3D structures. BMC Bioinform. 18(1): 456 (2017) - 2016
- [j14]Metin Türkay, Giovanni Felici, Marta Szachniuk, Piotr Lukasiak:
Recent Advances in Operations Research in Computational Biology, Bioinformatics and Medicine. RAIRO Oper. Res. 50(2): 327-330 (2016) - 2015
- [j13]Tomasz Zok, Maciej Antczak, Martin Riedel, David Nebel, Thomas Villmann, Piotr Lukasiak, Jacek Blazewicz, Marta Szachniuk:
Building the Library of Rna 3D Nucleotide Conformations Using the Clustering Approach. Int. J. Appl. Math. Comput. Sci. 25(3): 689-700 (2015) - [j12]Agnieszka Rybarczyk, Natalia Szostak, Maciej Antczak, Tomasz Zok, Mariusz Popenda, Ryszard W. Adamiak, Jacek Blazewicz, Marta Szachniuk:
New in silico approach to assessing RNA secondary structures with non-canonical base pairs. BMC Bioinform. 16: 276:1-276:12 (2015) - [j11]Marta Szachniuk, Maria Cristina De Cola, Giovanni Felici, Dominique de Werra, Jacek Blazewicz:
Optimal pathway reconstruction on 3D NMR maps. Discret. Appl. Math. 182: 134-149 (2015) - [j10]Piotr Lukasiak, Maciej Antczak, Tomasz Ratajczak, Marta Szachniuk, Mariusz Popenda, Ryszard W. Adamiak, Jacek Blazewicz:
RNAssess - a web server for quality assessment of RNA 3D structures. Nucleic Acids Res. 43(Webserver-Issue): W502-W506 (2015) - 2014
- [j9]Tomasz Zok, Mariusz Popenda, Marta Szachniuk:
MCQ4Structures to compute similarity of molecule structures. Central Eur. J. Oper. Res. 22(3): 457-473 (2014) - [j8]Maciej Antczak, Tomasz Zok, Mariusz Popenda, Piotr Lukasiak, Ryszard W. Adamiak, Jacek Blazewicz, Marta Szachniuk:
RNApdbee - a webserver to derive secondary structures from pdb files of knotted and unknotted RNAs. Nucleic Acids Res. 42(Webserver-Issue): 368-372 (2014) - [j7]Marta Szachniuk, Maria Cristina De Cola, Giovanni Felici, Jacek Blazewicz:
The Orderly Colored Longest Path Problem - a survey of applications and new algorithms. RAIRO Oper. Res. 48(1): 25-51 (2014) - 2013
- [j6]Marta Szachniuk, Mikolaj Malaczynski, Erwin Pesch, Edmund K. Burke, Jacek Blazewicz:
MLP accompanied beam search for the resonance assignment problem. J. Heuristics 19(3): 443-464 (2013) - 2012
- [j5]Marcin Radom, Agnieszka Rybarczyk, Renzo Kottmann, Piotr Formanowicz, Marta Szachniuk, Frank Oliver Glöckner, Dietrich Rebholz-Schuhmann, Jacek Blazewicz:
Poseidon: An information retrieval and extraction system for metagenomic marine science. Ecol. Informatics 12: 10-15 (2012) - 2010
- [j4]Mariusz Popenda, Marta Szachniuk, Marek Blazewicz, Szymon Wasik, Edmund K. Burke, Jacek Blazewicz, Ryszard W. Adamiak:
RNA FRABASE 2.0: an advanced web-accessible database with the capacity to search the three-dimensional fragments within RNA structures. BMC Bioinform. 11: 231 (2010)
2000 – 2009
- 2009
- [c3]Marta Szachniuk, Mariusz Popenda, Ryszard W. Adamiak, Jacek Blazewicz:
An assignment walk through 3D NMR spectrum. CIBCB 2009: 215-219 - 2008
- [j3]Mariusz Popenda, Marek Blazewicz, Marta Szachniuk, Ryszard W. Adamiak:
RNA FRABASE version 1.0: an engine with a database to search for the three-dimensional fragments within RNA structures. Nucleic Acids Res. 36(Database-Issue): 386-391 (2008) - 2005
- [j2]Jacek Blazewicz, Marta Szachniuk, Adam Wójtowicz:
RNA tertiary structure determination: NOE pathways construction by tabu search. Bioinform. 21(10): 2356-2361 (2005) - [c2]Marta Szachniuk, Lukasz Popenda, Zofia Gdaniec, Ryszard W. Adamiak, Jacek Blazewicz:
NMR Analysis of RNA Bulged structures: Tabu Search Application in NOE Signal Assignment. CIBCB 2005: 172-178 - 2004
- [j1]Ryszard W. Adamiak, Jacek Blazewicz, Piotr Formanowicz, Zofia Gdaniec, Marta Kasprzak, Mariusz Popenda, Marta Szachniuk:
An Algorithm for an Automatic NOE Pathways Analysis of 2D NMR Spectra of RNA Duplexes. J. Comput. Biol. 11(1): 163-179 (2004) - [c1]Jacek Blazewicz, Marta Szachniuk, Adam Wójtowicz:
Evolutionary approach to NOE paths assignment in RNA structure elucidation. CIBCB 2004: 206-213
Coauthor Index
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