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Journal Articles
- 2022
[j17]Josephine Yates
, Valentina Boeva:
Deciphering the etiology and role in oncogenic transformation of the CpG island methylator phenotype: a pan-cancer analysis. Briefings Bioinform. 23(2) (2022)- 2021
- [j16]Lélia Polit, Gwenneg Kerdivel, Sebastian Gregoricchio, Michela Esposito, Christel Guillouf, Valentina Boeva:
CHIPIN: ChIP-seq inter-sample normalization based on signal invariance across transcriptionally constant genes. BMC Bioinform. 22(1): 407 (2021) - 2018
- [j15]Paul Deveau, Leo Colmet Daage, Derek Oldridge, Virginie Bernard, Angela Bellini, Mathieu Chicard, Nathalie Clement, Eve Lapouble, Valerie Combaret, Anne Boland, Vincent Meyer, Jean-Francois Deleuze, Isabelle Janoueix-Lerosey, Emmanuel Barillot, Olivier Delattre, John M. Maris, Gudrun Schleiermacher, Valentina Boeva:
QuantumClone: clonal assessment of functional mutations in cancer based on a genotype-aware method for clonal reconstruction. Bioinform. 34(11): 1808-1816 (2018) - 2016
- [j14]Karel Brinda, Valentina Boeva, Gregory Kucherov:
RNF: a general framework to evaluate NGS read mappers. Bioinform. 32(1): 136-139 (2016) - [j13]Daria Iakovishina, Isabelle Janoueix-Lerosey, Emmanuel Barillot, Mireille Régnier, Valentina Boeva:
SV-Bay: structural variant detection in cancer genomes using a Bayesian approach with correction for GC-content and read mappability. Bioinform. 32(7): 984-992 (2016) - [j12]Paul Deveau, Emmanuel Barillot, Valentina Boeva, Andrei Yu. Zinovyev, Eric Bonnet:
Calculating Biological Module Enrichment or Depletion and Visualizing Data on Large-scale Molecular Maps with ACSNMineR and RNaviCell Packages. R J. 8(2): 293 (2016) - 2014
- [j11]Toby Dylan Hocking, Valentina Boeva, Guillem Rigaill, Gudrun Schleiermacher, Isabelle Janoueix-Lerosey, Olivier Delattre, Wilfrid Richer, Franck Bourdeaut, Miyuki Suguro, Masao Seto, Francis R. Bach, Jean-Philippe Vert:
SegAnnDB: interactive Web-based genomic segmentation. Bioinform. 30(11): 1539-1546 (2014) - [j10]Valentina Boeva, Tatiana G. Popova, Maxime Lienard, Sebastien Toffoli, Maud Kamal, Christophe Le Tourneau, David Gentien, Nicolas Servant, Pierre Gestraud, Thomas Rio Frio, Philippe Hupé, Emmanuel Barillot, Jean-François Laes:
Multi-factor data normalization enables the detection of copy number aberrations in amplicon sequencing data. Bioinform. 30(24): 3443-3450 (2014) - 2013
- [j9]Haitham Ashoor, Aurélie Hérault, Aurélie Kamoun, François Radvanyi, Vladimir B. Bajic, Emmanuel Barillot, Valentina Boeva:
HMCan: a method for detecting chromatin modifications in cancer samples using ChIP-seq data. Bioinform. 29(23): 2979-2986 (2013) - [j8]Toby Dylan Hocking, Gudrun Schleiermacher, Isabelle Janoueix-Lerosey, Valentina Boeva, Julie Cappo, Olivier Delattre, Francis R. Bach, Jean-Philippe Vert:
Learning smoothing models of copy number profiles using breakpoint annotations. BMC Bioinform. 14: 164 (2013) - 2012
- [j7]Valentina Boeva, Tatiana G. Popova, Kevin Bleakley, Pierre Chiche, Julie Cappo, Gudrun Schleiermacher, Isabelle Janoueix-Lerosey, Olivier Delattre, Emmanuel Barillot:
Control-FREEC: a tool for assessing copy number and allelic content using next-generation sequencing data. Bioinform. 28(3): 423-425 (2012) - [j6]Valentina Boeva, Alban Lermine, Camille Barette, Christel Guillouf, Emmanuel Barillot:
Nebula - a web-server for advanced ChIP-seq data analysis. Bioinform. 28(19): 2517-2519 (2012) - 2011
- [j5]Valentina Boeva, Andrei Yu. Zinovyev, Kevin Bleakley, Jean-Philippe Vert, Isabelle Janoueix-Lerosey, Olivier Delattre, Emmanuel Barillot:
Control-free calling of copy number alterations in deep-sequencing data using GC-content normalization. Bioinform. 27(2): 268-269 (2011) - 2010
- [j4]Bruno Zeitouni, Valentina Boeva, Isabelle Janoueix-Lerosey, Sophie Loeillet, Patricia Legoix-né, Alain Nicolas, Olivier Delattre, Emmanuel Barillot:
SVDetect: a tool to identify genomic structural variations from paired-end and mate-pair sequencing data. Bioinform. 26(15): 1895-1896 (2010) - [j3]Ivan V. Kulakovskiy, Valentina Boeva, Alexander V. Favorov, Vsevolod J. Makeev:
Deep and wide digging for binding motifs in ChIP-Seq data. Bioinform. 26(20): 2622-2623 (2010) - 2007
- [j2]Valentina Boeva, Julien Clément, Mireille Régnier, Mikhail A. Roytberg, Vsevolod J. Makeev:
Exact p-value calculation for heterotypic clusters of regulatory motifs and its application in computational annotation of cis-regulatory modules. Algorithms Mol. Biol. 2 (2007) - 2006
- [j1]Valentina Boeva, Mireille Régnier, Dmitri A. Papatsenko, Vsevolod J. Makeev:
Short fuzzy tandem repeats in genomic sequences, identification, and possible role in regulation of gene expression. Bioinform. 22(6): 676-684 (2006)
Conference and Workshop Papers
- 2024
- [c2]Andrey Ignatov, Josephine Yates, Valentina Boeva:
Histopathological Image Classification with Cell Morphology Aware Deep Neural Networks. CVPR Workshops 2024: 6913-6925 - 2005
- [c1]Valentina Boeva, Julien Clément, Mireille Régnier, Mathias Vandenbogaert:
Assessing the Significance of Sets of Words. CPM 2005: 358-370
Informal and Other Publications
- 2024
- [i3]Moritz Vandenhirtz, Florian Barkmann, Laura Manduchi, Julia E. Vogt, Valentina Boeva:
scTree: Discovering Cellular Hierarchies in the Presence of Batch Effects in scRNA-seq Data. CoRR abs/2406.19300 (2024) - [i2]Andrey Ignatov, Josephine Yates, Valentina Boeva:
Histopathological Image Classification with Cell Morphology Aware Deep Neural Networks. CoRR abs/2407.08625 (2024) - [i1]Olga Ovcharenko, Rita Sevastjanova, Valentina Boeva:
Feature Clock: High-Dimensional Effects in Two-Dimensional Plots. CoRR abs/2408.01294 (2024)
Coauthor Index
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last updated on 2024-10-11 17:28 CEST by the dblp team
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