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ORCIDAlexander V. Favorov
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2020 – today
- 2022
[c4]Bahman Afsari, Alexander V. Favorov, Elana J. Fertig, Leslie Cope:
Regression Expression Variation Analysis (REVA): a rank-based multi-dimensional measure of correlation. ICMLA 2022: 1063-1070
2010 – 2019
- 2019
- [j12]Gennady G. Fedonin
, Yury S. Fantin, Alexander V. Favorov, German A. Shipulin, Alexey D. Neverov:
VirGenA: a reference-based assembler for variable viral genomes. Briefings Bioinform. 20(1): 15-25 (2019) - 2018
- [j11]Bahman Afsari, Theresa Guo, Michael Considine, Liliana Florea, Luciane T. Kagohara, Genevieve L. Stein-O'Brien, Dylan Kelley, Emily Flam, Kristina D. Zambo, Patrick K. Ha, Donald Geman, Michael F. Ochs, Joseph A. Califano, Daria A. Gaykalova, Alexander V. Favorov, Elana J. Fertig:
Splice Expression Variation Analysis (SEVA) for inter-tumor heterogeneity of gene isoform usage in cancer. Bioinform. 34(11): 1859-1867 (2018) - [j10]Boris Simovski, Chakravarthi Kanduri, Sveinung Gundersen, Dmytro Titov, Diana Domanska, Christoph Bock, Lara Bossini-Castillo, Maria Chikina, Alexander V. Favorov, Ryan M. Layer, Andrey A. Mironov, Aaron R. Quinlan, Nathan C. Sheffield, Gosia Trynka, Geir Kjetil Sandve:
Coloc-stats: a unified web interface to perform colocalization analysis of genomic features. Nucleic Acids Res. 46(Webserver-Issue): W186-W193 (2018) - 2017
- [j9]Genevieve L. Stein-O'Brien, Jacob L. Carey, Waishing Lee, Michael Considine, Alexander V. Favorov, Emily Flam, Theresa Guo, Sijia Li, Luigi Marchionni, Thomas Sherman, Shawn Sivy, Daria A. Gaykalova, Ronald McKay, Michael F. Ochs, Carlo Colantuoni, Elana J. Fertig:
PatternMarkers & GWCoGAPS for novel data-driven biomarkers via whole transcriptome NMF. Bioinform. 33(12): 1892-1894 (2017) - [j8]Elena D. Stavrovskaya, Tejasvi Niranjan, Elana J. Fertig, Sarah J. Wheelan, Alexander V. Favorov, Andrey A. Mironov:
StereoGene: rapid estimation of genome-wide correlation of continuous or interval feature data. Bioinform. 33(20): 3158-3165 (2017) - 2014
- [j7]Hilary S. Parker, Jeffrey T. Leek, Alexander V. Favorov, Michael Considine, Xiaoxin Xia, Sameer Chavan, Christine H. Chung, Elana J. Fertig:
Preserving biological heterogeneity with a permuted surrogate variable analysis for genomics batch correction. Bioinform. 30(19): 2757-2763 (2014) - 2013
- [c3]Elena D. Stavrovskaya, Andrey A. Mironov, Alexander V. Favorov:
Fast assessment of the correlation between coverage-like genomic features and its statistical significance. IWBBIO 2013: 225-232 - 2012
- [j6]Alexander V. Favorov, Loris Mularoni, Leslie M. Cope, Yulia A. Medvedeva, Andrey A. Mironov, Vsevolod J. Makeev, Sarah J. Wheelan:
Exploring Massive, Genome Scale Datasets with the GenometriCorr Package. PLoS Comput. Biol. 8(5) (2012) - [c2]Elana J. Fertig, Alexander V. Favorov, Michael F. Ochs:
Identifying context-specific transcription factor targets from prior knowledge and gene expression data. BIBM 2012: 1-6 - [c1]Anna A. Nilulova, Alexander V. Favorov, Vsevolod J. Makeev, Andrey A. Mironov:
A Generalized Hidden Markov Model for Prediction of Cis-regulatory Modules in Eukaryote Genomes and Description of Their Internal Structure. BIOINFORMATICS 2012: 34-41 - 2010
- [j5]Ivan V. Kulakovskiy, Valentina Boeva, Alexander V. Favorov, Vsevolod J. Makeev:
Deep and wide digging for binding motifs in ChIP-Seq data. Bioinform. 26(20): 2622-2623 (2010) - [j4]Elana J. Fertig, Jie Ding, Alexander V. Favorov, Giovanni Parmigiani, Michael F. Ochs:
CoGAPS: an R/C++ package to identify patterns and biological process activity in transcriptomic data. Bioinform. 26(21): 2792-2793 (2010)
2000 – 2009
- 2009
- [j3]Ivan V. Kulakovskiy, Alexander V. Favorov, Vsevolod J. Makeev:
Motif discovery and motif finding from genome-mapped DNase footprint data. Bioinform. 25(18): 2318-2325 (2009) - 2006
- [j2]Ludmila V. Danilova, Dmitri D. Pervouchine, Alexander V. Favorov, Andrey A. Mironov:
Rnakinetics: a Web Server that Models Secondary Structure Kinetics of an Elongating RNA. J. Bioinform. Comput. Biol. 4(2): 589-596 (2006) - 2005
- [j1]Alexander V. Favorov, Mikhail S. Gelfand, Anna V. Gerasimova, Dmitry A. Ravcheev, Andrey A. Mironov, Vsevolod J. Makeev:
A Gibbs sampler for identification of symmetrically structured, spaced DNA motifs with improved estimation of the signal length. Bioinform. 21(10): 2240-2245 (2005)
Coauthor Index
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