![](https://dblp.dagstuhl.de/img/logo.320x120.png)
![search dblp search dblp](https://dblp.dagstuhl.de/img/search.dark.16x16.png)
![search dblp](https://dblp.dagstuhl.de/img/search.dark.16x16.png)
default search action
Ruth Y. Eberhardt
Person information
SPARQL queries ![](https://dblp.dagstuhl.de/img/new.blue.24x12.png)
Refine list
![note](https://dblp.dagstuhl.de/img/note-mark.dark.12x12.png)
refinements active!
zoomed in on ?? of ?? records
view refined list in
export refined list as
Journal Articles
- 2016
- [j20]Robert D. Finn, Penelope Coggill, Ruth Y. Eberhardt
, Sean R. Eddy
, Jaina Mistry, Alex L. Mitchell, Simon C. Potter
, Marco Punta
, Matloob Qureshi
, Amaia Sangrador-Vegas
, Gustavo A. Salazar
, John G. Tate
, Alex Bateman:
The Pfam protein families database: towards a more sustainable future. Nucleic Acids Res. 44(Database-Issue): 279-285 (2016) - 2015
- [j19]Eric P. Nawrocki, Sarah W. Burge
, Alex Bateman, Jennifer Daub
, Ruth Y. Eberhardt
, Sean R. Eddy
, Evan W. Floden
, Paul P. Gardner
, Thomas A. Jones, John G. Tate
, Robert D. Finn
:
Rfam 12.0: updates to the RNA families database. Nucleic Acids Res. 43(Database-Issue): 130-137 (2015) - 2014
- [j18]Christine B. Trame, Yuanyuan Chang, Herbert L. Axelrod, Ruth Y. Eberhardt
, Penelope Coggill, Marco Punta
, Neil D. Rawlings
:
New mini- zincin structures provide a minimal scaffold for members of this metallopeptidase superfamily. BMC Bioinform. 15: 1 (2014) - [j17]Anna Sheydina, Ruth Y. Eberhardt
, Daniel J. Rigden
, Yuanyuan Chang, Zhanwen Li, Christian M. Zmasek, Herbert L. Axelrod, Adam Godzik
:
Structural genomics analysis of uncharacterized protein families overrepresented in human gut bacteria identifies a novel glycoside hydrolase. BMC Bioinform. 15: 112 (2014) - [j16]Daniel J. Rigden
, Ruth Y. Eberhardt
, Harry J. Gilbert, Qingping Xu, Yuanyuan Chang, Adam Godzik
:
Structure- and context-based analysis of the GxGYxYP family reveals a new putative class of Glycoside Hydrolase. BMC Bioinform. 15: 196 (2014) - [j15]Robert D. Finn
, Alex Bateman
, Jody Clements
, Penelope Coggill, Ruth Y. Eberhardt
, Sean R. Eddy
, Andreas Heger
, Kirstie Hetherington, Liisa Holm
, Jaina Mistry
, Erik L. L. Sonnhammer
, John G. Tate
, Marco Punta
:
Pfam: the protein families database. Nucleic Acids Res. 42(Database-Issue): 222-230 (2014) - 2013
- [j14]Jaina Mistry
, Penny C. Coggill, Ruth Y. Eberhardt
, Antonio Deiana, Andrea Giansanti
, Robert D. Finn
, Alex Bateman, Marco Punta
:
The challenge of increasing Pfam coverage of the human proteome. Database J. Biol. Databases Curation 2013 (2013) - [j13]Jaina Mistry, Penny C. Coggill, Ruth Y. Eberhardt, Antonio Deiana, Andrea Giansanti, Robert D. Finn, Alex Bateman, Marco Punta:
The challenge of increasing Pfam coverage of the human proteome. Database J. Biol. Databases Curation 2013 (2013) - [j12]Penelope Coggill, Ruth Y. Eberhardt
, Robert D. Finn
, Yuanyuan Chang, Lukasz Jaroszewski, Adam Godzik
, Debanu Das, Qingping Xu, Herbert L. Axelrod, L. Aravind
, Alexey G. Murzin, Alex Bateman
:
Two Pfam protein families characterized by a crystal structure of protein lpg2210 from Legionella pneumophila. BMC Bioinform. 14: 265 (2013) - [j11]Ruth Y. Eberhardt
, Yuanyuan Chang, Alex Bateman
, Alexey G. Murzin, Herbert L. Axelrod, William C. Hwang, L. Aravind
:
Filling out the structural map of the NTF2-like superfamily. BMC Bioinform. 14: 327 (2013) - [j10]William C. Hwang, Constantina Bakolitsa
, Marco Punta
, Penelope Coggill, Alex Bateman
, Herbert L. Axelrod, Neil D. Rawlings
, Mayya Sedova
, Scott N. Peterson, Ruth Y. Eberhardt
, L. Aravind
, Jaime Pascual, Adam Godzik
:
LUD, a new protein domain associated with lactate utilization. BMC Bioinform. 14: 341 (2013) - [j9]Sarah W. Burge
, Jennifer Daub
, Ruth Y. Eberhardt
, John G. Tate
, Lars Barquist
, Eric P. Nawrocki, Sean R. Eddy
, Paul P. Gardner
, Alex Bateman
:
Rfam 11.0: 10 years of RNA families. Nucleic Acids Res. 41(Database-Issue): 226-232 (2013) - 2012
- [j8]Ruth Y. Eberhardt
, Daniel H. Haft, Marco Punta
, Maria Jesus Martin
, Claire O'Donovan
, Alex Bateman
:
AntiFam: a tool to help identify spurious ORFs in protein annotation. Database J. Biol. Databases Curation 2012 (2012) - [j7]Marco Punta
, Penny C. Coggill, Ruth Y. Eberhardt
, Jaina Mistry
, John G. Tate
, Chris Boursnell, Ningze Pang, Kristoffer Forslund
, Goran Ceric, Jody Clements
, Andreas Heger
, Liisa Holm
, Erik L. L. Sonnhammer
, Sean R. Eddy
, Alex Bateman
, Robert D. Finn
:
The Pfam protein families database. Nucleic Acids Res. 40(Database-Issue): 290-301 (2012) - [j6]Emily C. Dimmer, Rachael P. Huntley
, Yasmin Alam-Faruque, Tony Sawford, Claire O'Donovan
, Maria Jesus Martin
, Benoit Bely
, Paul Browne, Wei Mun Chan, Ruth Y. Eberhardt
, Michael Gardner, Kati Laiho, Duncan Legge, Michele Magrane, Klemens Pichler
, Diego Poggioli, Harminder Sehra, Andrea H. Auchincloss, Kristian B. Axelsen, Marie-Claude Blatter, Emmanuel Boutet, Silvia Braconi-Quintaje, Lionel Breuza
, Alan J. Bridge
, Elisabeth Coudert
, Anne Estreicher
, Maria Livia Famiglietti, Serenella Ferro-Rojas, Marc Feuermann, Arnaud Gos, Nadine Gruaz-Gumowski, Ursula Hinz, Chantal Hulo, Janet James, Silvia Jimenez, Florence Jungo
, Guillaume Keller, Phillippe Lemercier, Damien Lieberherr, Patrick Masson
, Madelaine Moinat, Ivo Pedruzzi
, Sylvain Poux
, Catherine Rivoire
, Bernd Roechert, Michel Schneider
, Andre Stutz, Shyamala Sundaram, Michael Tognolli
, Lydie Bougueleret, Ghislaine Argoud-Puy, Isabelle Cusin, Paula Duek Roggli, Ioannis Xenarios
, Rolf Apweiler
:
The UniProt-GO Annotation database in 2011. Nucleic Acids Res. 40(Database-Issue): 565-570 (2012) - 2008
- [j5]Guy Cochrane
, Ruth Akhtar, Philippe Aldebert, Nicola Althorpe, Alastair Baldwin, Kirsty Bates, Sumit Bhattacharyya, James K. Bonfield
, Lawrence Bower, Paul Browne, Matias Castro, Tony Cox, Fehmi Demiralp, Ruth Y. Eberhardt
, Nadeem Faruque, Gemma Hoad, Mikyung Jang, Tamara Kulikova, Alberto Labarga
, Rasko Leinonen
, Steven Leonard, Quan Lin, Rodrigo Lopez
, Dariusz Lorenc, Hamish McWilliam
, Gaurab Mukherjee, Francesco Nardone, Sheila Plaister
, Stephen Robinson, Siamak Sobhany, Robert Vaughan
, Dan Wu, Weimin Zhu, Rolf Apweiler
, Tim J. P. Hubbard, Ewan Birney
:
Priorities for nucleotide trace, sequence and annotation data capture at the Ensembl Trace Archive and the EMBL Nucleotide Sequence Database. Nucleic Acids Res. 36(Database-Issue): 5-12 (2008) - 2007
- [j4]Tamara Kulikova, Ruth Akhtar, Philippe Aldebert, Nicola Althorpe, Mikael Andersson, Alastair Baldwin, Kirsty Bates, Sumit Bhattacharyya, Lawrence Bower, Paul Browne, Matias Castro, Guy Cochrane
, Karyn Duggan, Ruth Y. Eberhardt
, Nadeem Faruque, Gemma Hoad, Carola Kanz, Charles Lee, Rasko Leinonen
, Quan Lin, Vincent Lombard
, Rodrigo Lopez
, Dariusz Lorenc, Hamish McWilliam
, Gaurab Mukherjee, Francesco Nardone, Maria Pilar Garcia Pastor, Sheila Plaister
, Siamak Sobhany, Peter Stoehr
, Robert Vaughan
, Dan Wu, Weimin Zhu, Rolf Apweiler
:
EMBL Nucleotide Sequence Database in 2006. Nucleic Acids Res. 35(Database-Issue): 16-20 (2007) - 2006
- [j3]Guy Cochrane
, Philippe Aldebert, Nicola Althorpe, Mikael Andersson, Wendy Baker, Alastair Baldwin, Kirsty Bates, Sumit Bhattacharyya, Paul Browne, Alexandra van den Broek, Matias Castro, Karyn Duggan, Ruth Y. Eberhardt, Nadeem Faruque, John Gamble, Carola Kanz, Tamara Kulikova, Charles Lee, Rasko Leinonen
, Quan Lin, Vincent Lombard
, Rodrigo Lopez
, Michelle McHale, Hamish McWilliam
, Gaurab Mukherjee, Francesco Nardone, Maria Pilar Garcia Pastor, Siamak Sobhany, Peter Stoehr
, Katerina Tzouvara, Robert Vaughan
, Dan Wu, Weimin Zhu, Rolf Apweiler
:
EMBL Nucleotide Sequence Database: developments in 2005. Nucleic Acids Res. 34(Database-Issue): 10-15 (2006) - 2005
- [j2]Carola Kanz, Philippe Aldebert, Nicola Althorpe, Wendy Baker, Alastair Baldwin, Kirsty Bates, Paul Browne, Alexandra van den Broek, Matias Castro, Guy Cochrane
, Karyn Duggan, Ruth Y. Eberhardt
, Nadeem Faruque, John Gamble, Federico Garcia Diez, Nicola Harte, Tamara Kulikova, Quan Lin, Vincent Lombard
, Rodrigo Lopez
, Renato Mancuso, Michelle McHale, Francesco Nardone, Ville Silventoinen, Siamak Sobhany, Peter Stoehr
, Mary Ann Tuli
, Katerina Tzouvara, Robert Vaughan
, Dan Wu, Weimin Zhu, Rolf Apweiler
:
The EMBL Nucleotide Sequence Database. Nucleic Acids Res. 33(Database-Issue): 29-33 (2005) - 2004
- [j1]Tamara Kulikova, Philippe Aldebert, Nicola Althorpe, Wendy Baker, Kirsty Bates, Paul Browne, Alexandra van den Broek, Guy Cochrane
, Karyn Duggan, Ruth Y. Eberhardt, Nadeem Faruque, Maria Garcia-Pastor, Nicola Harte, Carola Kanz, Rasko Leinonen
, Quan Lin, Vincent Lombard
, Rodrigo Lopez
, Renato Mancuso, Michelle McHale, Francesco Nardone, Ville Silventoinen, Peter Stoehr
, Guenter Stoesser, Mary Ann Tuli
, Katerina Tzouvara, Robert Vaughan
, Dan Wu, Weimin Zhu, Rolf Apweiler
:
The EMBL Nucleotide Sequence Database. Nucleic Acids Res. 32(Database-Issue): 27-30 (2004)
Coauthor Index
![](https://dblp.dagstuhl.de/img/cog.dark.24x24.png)
manage site settings
To protect your privacy, all features that rely on external API calls from your browser are turned off by default. You need to opt-in for them to become active. All settings here will be stored as cookies with your web browser. For more information see our F.A.Q.
Unpaywalled article links
Add open access links from to the list of external document links (if available).
Privacy notice: By enabling the option above, your browser will contact the API of unpaywall.org to load hyperlinks to open access articles. Although we do not have any reason to believe that your call will be tracked, we do not have any control over how the remote server uses your data. So please proceed with care and consider checking the Unpaywall privacy policy.
Archived links via Wayback Machine
For web page which are no longer available, try to retrieve content from the of the Internet Archive (if available).
Privacy notice: By enabling the option above, your browser will contact the API of archive.org to check for archived content of web pages that are no longer available. Although we do not have any reason to believe that your call will be tracked, we do not have any control over how the remote server uses your data. So please proceed with care and consider checking the Internet Archive privacy policy.
Reference lists
Add a list of references from ,
, and
to record detail pages.
load references from crossref.org and opencitations.net
Privacy notice: By enabling the option above, your browser will contact the APIs of crossref.org, opencitations.net, and semanticscholar.org to load article reference information. Although we do not have any reason to believe that your call will be tracked, we do not have any control over how the remote server uses your data. So please proceed with care and consider checking the Crossref privacy policy and the OpenCitations privacy policy, as well as the AI2 Privacy Policy covering Semantic Scholar.
Citation data
Add a list of citing articles from and
to record detail pages.
load citations from opencitations.net
Privacy notice: By enabling the option above, your browser will contact the API of opencitations.net and semanticscholar.org to load citation information. Although we do not have any reason to believe that your call will be tracked, we do not have any control over how the remote server uses your data. So please proceed with care and consider checking the OpenCitations privacy policy as well as the AI2 Privacy Policy covering Semantic Scholar.
OpenAlex data
Load additional information about publications from .
Privacy notice: By enabling the option above, your browser will contact the API of openalex.org to load additional information. Although we do not have any reason to believe that your call will be tracked, we do not have any control over how the remote server uses your data. So please proceed with care and consider checking the information given by OpenAlex.
last updated on 2024-08-14 22:19 CEST by the dblp team
all metadata released as open data under CC0 1.0 license
see also: Terms of Use | Privacy Policy | Imprint