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ORCIDHiroshi Masuya
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Journal Articles
- 2024
[j10]Yuki Yamagata
, Tatsuya Kushida, Shuichi Onami, Hiroshi Masuya:
Homeostasis imbalance process ontology: a study on COVID-19 infectious processes. BMC Medical Informatics Decis. Mak. 23-S(4): 301 (2024)- 2020
- [j9]Hamed Haselimashhadi, Jeremy C. Mason, Violeta Muñoz-Fuentes, Federico López-Gómez, Kolawole O. Babalola, Elif F. Acar, Vivek Kumar, Jacqui White, Ann M. Flenniken, Ruairidh King, Ewan Straiton, John Richard Seavitt, Angelina Gaspero, Arturo Garza, Audrey E. Christianson, Chih-Wei Hsu, Corey L. Reynolds, Denise G. Lanza, Isabel Lorenzo, Jennie R. Green, Juan J. Gallegos, Ritu Bohat, Rodney C. Samaco, Surabi Veeraragavan, Jong Kyoung Kim, Gregor Miller, Helmut Fuchs, Lillian Garrett, Lore Becker, Yeon Kyung Kang, David Clary, Soo Young Cho, Masaru Tamura, Nobuhiko Tanaka, Kyung Dong Soo, Alexandr Bezginov, Ghina Bou About, Marie-France Champy, Laurent Vasseur, Sophie Leblanc, Hamid Meziane, Mohammed Selloum, Patrick T. Reilly, Nadine Spielmann, Holger Maier, Valérie Gailus-Durner, Tania Sorg, Hiroshi Masuya, Yuichi Obata, Jason D. Heaney, Mary E. Dickinson, Wolfgang Wurst, Glauco P. Tocchini-Valentini, Kevin C. Kent Lloyd, Colin McKerlie, Je Kyung Seong, Yann Herault, Martin Hrabé de Angelis, Steve D. M. Brown, Damian Smedley, Paul Flicek, Ann-Marie Mallon, Helen E. Parkinson, Terrence F. Meehan:
Soft windowing application to improve analysis of high-throughput phenotyping data. Bioinform. 36(5): 1492-1500 (2020) - 2018
- [j8]Norio Kobayashi, Satoshi Kume, Kai Lenz, Hiroshi Masuya:
RIKEN MetaDatabase: A Database Platform for Health Care and Life Sciences as a Microcosm of Linked Open Data Cloud. Int. J. Semantic Web Inf. Syst. 14(1): 140-164 (2018) - 2014
- [j7]Sirarat Sarntivijai, Yu Lin, Zuoshuang Xiang, Terrence F. Meehan, Alexander D. Diehl, Uma D. Vempati, Stephan C. Schürer, Chao Pang, James Malone, Helen E. Parkinson, Yue Liu, Terue Takatsuki, Kaoru Saijo, Hiroshi Masuya, Yukio Nakamura, Matthew H. Brush, Melissa A. Haendel, Jie Zheng, Christian J. Stoeckert Jr., Bjoern Peters, Christopher J. Mungall, Thomas E. Carey, David J. States, Brian D. Athey, Yongqun He:
CLO: The cell line ontology. J. Biomed. Semant. 5: 37 (2014) - 2013
- [j6]Yuko Makita, Norio Kobayashi, Yuko Yoshida, Koji Doi, Yoshiki Mochizuki, Koro Nishikata, Akihiro Matsushima, Satoshi Takahashi, Manabu Ishii, Terue Takatsuki, Rinki Bhatia, Zolzaya Khadbaatar, Hajime Watabe, Hiroshi Masuya, Tetsuro Toyoda:
PosMed: ranking genes and bioresources based on Semantic Web Association Study. Nucleic Acids Res. 41(Webserver-Issue): 109-114 (2013) - 2011
- [j5]Hiroshi Masuya, Yuko Makita, Norio Kobayashi, Koro Nishikata, Yuko Yoshida, Yoshiki Mochizuki, Koji Doi, Terue Takatsuki, Kazunori Waki, Nobuhiko Tanaka, Manabu Ishii, Akihiro Matsushima, Satoshi Takahashi, Atsushi Hijikata, Kouji Kozaki, Teiichi Furuichi, Hideya Kawaji, Shigeharu Wakana, Yukio Nakamura, Atsushi Yoshiki, Takehide Murata, Kaoru Fukami-Kobayashi, S. Sujatha Mohan, Osamu Ohara, Yoshihide Hayashizaki, Riichiro Mizoguchi, Yuichi Obata, Tetsuro Toyoda:
The RIKEN integrated database of mammals. Nucleic Acids Res. 39(Database-Issue): 861-870 (2011) - 2010
- [j4]Nobuhiko Tanaka, Kazunori Waki, Hideki Kaneda, Tomohiro Suzuki, Ikuko Yamada, Tamio Furuse, Kimio Kobayashi, Hiromi Motegi, Hideaki Toki, Maki Inoue, Osamu Minowa, Tetsuo Noda, Keizo Takao, Tsuyoshi Miyakawa, Aki Takahashi, Tsuyoshi Koide, Shigeharu Wakana, Hiroshi Masuya:
SDOP-DB: a comparative standardized-protocol database for mouse phenotypic analyses. Bioinform. 26(8): 1133-1134 (2010) - 2009
- [j3]Yuko Yoshida, Yuko Makita, Naohiko Heida, Satomi Asano, Akihiro Matsushima, Manabu Ishii, Yoshiki Mochizuki, Hiroshi Masuya, Shigeharu Wakana, Norio Kobayashi, Tetsuro Toyoda:
PosMed (Positional Medline): prioritizing genes with an artificial neural network comprising medical documents to accelerate positional cloning. Nucleic Acids Res. 37(Web-Server-Issue): 147-152 (2009) - 2008
- [j2]Eli Kaminuma, Hiroshi Masuya, Ikuo Miura, Hiromi Motegi, Kenzi R. Takahasi, Miki Nakazawa, Minami Matsui, Yoichi Gondo, Tetsuo Noda, Toshihiko Shiroishi, Shigeharu Wakana, Tetsuro Toyoda:
Objective Evaluation Measures of Genetic Marker Selection in Large-Scale SNP genotyping. J. Bioinform. Comput. Biol. 6(5): 905-917 (2008) - 2007
- [j1]Hiroshi Masuya, Sumi Yoshikawa, Naohiko Heida, Tetsuro Toyoda, Shigeharu Wakana, Toshihiko Shiroishi:
Phenosite: a Web Database Integrating the mouse phenotyping Platform and the Experimental Procedures in mice. J. Bioinform. Comput. Biol. 5(6): 1173-1191 (2007)
Conference and Workshop Papers
- 2023
- [c23]Tarcisio Mendes de Farias, Tatsuya Kushida, Ana Claudia Sima, Christophe Dessimoz, Hirokazu Chiba, Frédéric B. Bastian, Hiroshi Masuya:
Data in use for Alzheimer disease study: combining gene expression, orthology, bioresource and disease datasets. SWAT4HCLS 2023: 177-178 - 2022
- [c22]Tatsuya Kushida, Daiki Usuda, Toyoyuki Takada, Yuki Yamagata, Hiroshi Masuya:
Ontology Integration for Discovering Bioresources Contributing to Medical Science Research. ICBO 2022: 1 - [c21]Yuki Yamagata, Shuichi Onami, Hiroshi Masuya:
Knowledge Systematization for Cellular Senescence Processes by Homeostasis Imbalance Process Ontology. ICBO 2022: 1 - 2021
- [c20]Asiyah Yu Lin, Yuki Yamagata, William D. Duncan, Leigh C. Carmody, Tatsuya Kushida, Hiroshi Masuya, John Beverley, Biswanath Dutta, Michael DeBellis, Zoë May Pendlington, Paola Roncaglia, Yongqun He:
A Community Effort for COVID-19 Ontology Harmonization. ICBO 2021: 122-127 - 2017
- [c19]Atsuko Yamaguchi, Kouji Kozaki, Yasunori Yamamoto, Hiroshi Masuya, Norio Kobayashi:
Semantic Graph Analysis for Federated LOD Surfing in Life Sciences. JIST 2017: 268-276 - [c18]Satoshi Kume, Hiroshi Masuya, Mitsuyo Maeda, Mitsuo Suga, Yosky Kataoka, Norio Kobayashi:
Development of Semantic Web-Based Imaging Database for Biological Morphome. JIST 2017: 277-285 - [c17]Norio Kobayashi, Satoshi Kume, Hiroshi Masuya:
Metadata-driven Interdisciplinary Research Projects Using RIKEN MetaDatabase. SWAT4LS 2017 - [c16]Atsuko Yamaguchi, Kouji Kozaki, Yasunori Yamamoto, Hiroshi Masuya, Norio Kobayashi:
LOD Surfer API: Web API for LOD Surfing Using Class-Class Relationships in Life Sciences. SWAT4LS 2017 - 2016
- [c15]Norio Kobayashi, Kai Lenz, Hiroshi Masuya:
RIKEN MetaDatabase: A Database Platform as a Microcosm of Linked Open Data Cloud in the Life Sciences. JIST (Workshops & Posters) 2016: 46-49 - [c14]Atsuko Yamaguchi, Kouji Kozaki, Kai Lenz, Yasunori Yamamoto, Hiroshi Masuya, Norio Kobayashi:
SPARQL Builder: Constructing SPARQL Query by Traversing Class-Class Relationships for Life Science Databases. JIST (Workshops & Posters) 2016: 58-61 - [c13]Norio Kobayashi, Kai Lenz, Hiroshi Masuya:
RIKEN MetaDatabase: A Database Platform as a Microcosm of Linked Open Data Cloud in the Life Sciences. JIST 2016: 99-115 - [c12]Atsuko Yamaguchi, Kouji Kozaki, Kai Lenz, Yasunori Yamamoto, Hiroshi Masuya, Norio Kobayashi:
Semantic Data Acquisition by Traversing Class-Class Relationships Over Linked Open Data. JIST 2016: 136-151 - [c11]Satoshi Kume, Hiroshi Masuya, Yosky Kataoka, Norio Kobayashi:
Development of an Ontology for an Integrated Image Analysis Platform to enable Global Sharing of Microscopy Imaging Data. ISWC (Posters & Demos) 2016 - [c10]Kai Lenz, Hiroshi Masuya, Norio Kobayashi:
RIKEN MetaDatabase: a Database Publication Platform for RIKENs Life-science Researchers that Promotes Research Collaborations over Different Research Area. ISWC (Posters & Demos) 2016 - [c9]Terue Takatsuki, Mikako Saito, Sadahiro Kumagai, Eiki Takayama, Kazuya Ohshima, Nozomu Ohshiro, Kai Lenz, Nobuhiko Tanaka, Norio Kobayashi, Hiroshi Masuya:
A RDF based Portal of Biological Phenotype Data produced in Japan. ISWC (Posters & Demos) 2016 - [c8]Atsuko Yamaguchi, Kouji Kozaki, Kai Lenz, Yasunori Yamamoto, Hiroshi Masuya, Norio Kobayashi:
Data Acquisition by Traversing Class-Class Relationships over the Linked Open Data. ISWC (Posters & Demos) 2016 - [c7]Atsuko Yamaguchi, Yasunori Yamamoto, Kouji Kozaki, Kai Lenz, Hiroshi Masuya, Norio Kobayashi:
SPARQL Query Construction with Monitoring Service for Endpoints. SWAT4LS 2016 - 2015
- [c6]Hiroshi Masuya, Terue Takatsuki, Mikako Saito, Eiki Takayama, Kazuya Ohshima, Nozomu Ohshiro, Kai Lenz, Nobuhiko Tanaka, Hiroshi Mori, Shuichi Kawashima, Norio Kobayashi:
RDF-based Data Sharing of Bio-resource Related Information. SWAT4LS 2015: 210-211 - [c5]Norio Kobayashi, Kai Lenz, Hiroshi Masuya:
RIKEN Meta Database: A Life-science Metadata Database Based on the Semantic Web. SWAT4LS 2015: 222-223 - 2013
- [c4]Norio Kobayashi, Yuko Makita, Manabu Ishii, Akihiro Matsushima, Yoshiki Mochizuki, Koji Doi, Koro Nishikata, David Gifford, Terue Takatsuki, Hiroshi Masuya, Tetsuro Toyoda:
PosMed: A Biomedical Entity Prioritisation Tool Based on Statistical Inference over Literature and the Semantic Web. SWAT4LS 2013 - 2012
- [c3]Hiroshi Masuya, Terue Takatsuki, Yuko Makita, Yuko Yoshida, Yoshiki Mochizuki, Norio Kobayashi, Atsushi Yoshiki, Yukio Nakamura, Tetsuro Toyoda, Yuichi Obata:
Development of Linked Open Data for Bioresources. JIST 2012: 350-355 - [c2]Hiroshi Masuya, Riichiro Mizoguchi:
An Ontology of Gene. ICBO 2012 - 2011
- [c1]Hiroshi Masuya, Georgios V. Gkoutos, Nobuhiko Tanaka, Kazunori Waki, Yoshihiro Okuda, Tatsuya Kushida, Norio Kobayashi, Koji Doi, Kouji Kozaki, Robert Hoehndorf, Shigeharu Wakana, Tetsuro Toyoda, Riichiro Mizoguchi:
An Advanced Strategy for Integration of Biological Measurement Data. ICBO 2011
Informal and Other Publications
- 2021
- [i2]Satoshi Kume, Hiroshi Masuya, Yosky Kataoka, Norio Kobayashi:
Development of an Ontology for an Integrated Image Analysis Platform to enable Global Sharing of Microscopy Imaging Data. CoRR abs/2110.10407 (2021) - [i1]Satoshi Kume, Hiroshi Masuya, Mitsuyo Maeda, Mitsuo Suga, Yosky Kataoka, Norio Kobayashi:
Development of Semantic Web-based Imaging Database for Biological Morphome. CoRR abs/2110.12058 (2021)
Coauthor Index
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