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ORCIDHidetoshi Kono
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Journal Articles
- 2022
[j13]Shun Sakuraba
, Qilin Xie, Kota Kasahara, Junichi Iwakiri, Hidetoshi Kono:
Extended ensemble simulations of a SARS-CoV-2 nsp1-5'-UTR complex. PLoS Comput. Biol. 18(1) (2022)- 2019
- [j12]Hidetoshi Kono, Shun Sakuraba, Hisashi Ishida:
Correction: Free energy profiles for unwrapping the outer superhelical turn of nucleosomal DNA. PLoS Comput. Biol. 15(10) (2019) - 2018
- [j11]Hidetoshi Kono, Shun Sakuraba, Hisashi Ishida:
Free energy profiles for unwrapping the outer superhelical turn of nucleosomal DNA. PLoS Comput. Biol. 14(3) (2018) - 2016
- [j10]Jinzen Ikebe, Shun Sakuraba, Hidetoshi Kono:
H3 Histone Tail Conformation within the Nucleosome and the Impact of K14 Acetylation Studied Using Enhanced Sampling Simulation. PLoS Comput. Biol. 12(3) (2016) - 2014
- [j9]Jinzen Ikebe, Shun Sakuraba, Hidetoshi Kono:
Adaptive lambda square dynamics simulation: An efficient conformational sampling method for biomolecules. J. Comput. Chem. 35(1): 39-50 (2014) - 2008
- [j8]Hidetoshi Kono, Tomo Yuasa, Shinya Nishiue, Kei Yura:
coliSNP database server mapping nsSNPs on protein structures. Nucleic Acids Res. 36(Database-Issue): 409-413 (2008) - 2006
- [j7]Shandar Ahmad, Hidetoshi Kono, Marcos J. Araúzo-Bravo, Akinori Sarai:
ReadOut: structure-based calculation of direct and indirect readout energies and specificities for protein-DNA recognition. Nucleic Acids Res. 34(Web-Server-Issue): 124-127 (2006) - 2005
- [j6]Sheldon Park, Hidetoshi Kono, Wei Wang, Eric T. Boder, Jeffery G. Saven:
Progress in the development and application of computational methods for probabilistic protein design. Comput. Chem. Eng. 29(3): 407-421 (2005) - [j5]Akinori Sarai, Jorg Siebers, Samuel Selvaraj, M. Michael Gromiha, Hidetoshi Kono:
Integration of Bioinformatics and Computational Biology to Understand Protein-dna Recognition Mechanism. J. Bioinform. Comput. Biol. 3(1): 169-183 (2005) - 2001
- [j4]Ponraj Prabakaran, Jianghong An, M. Michael Gromiha, Samuel Selvaraj, Hatsuho Uedaira, Hidetoshi Kono, Akinori Sarai:
Thermodynamic database for protein-nucleic acid interactions (ProNIT). Bioinform. 17(11): 1027-1034 (2001) - 2000
- [j3]Kenji Sayano, Hidetoshi Kono, M. Michael Gromiha, Akinori Sarai:
Multicanonical Monte Carlo calculation of the free-energy map of the base-amino acid interaction. J. Comput. Chem. 21(11): 954-962 (2000) - [j2]M. Michael Gromiha, Jianghong An, Hidetoshi Kono, Motohisa Oobatake, Hatsuho Uedaira, Ponraj Prabakaran, Akinori Sarai:
ProTherm, version 2.0: thermodynamic database for proteins and mutants. Nucleic Acids Res. 28(1): 283-285 (2000) - 1999
- [j1]M. Michael Gromiha, Jianghong An, Hidetoshi Kono, Motohisa Oobatake, Hatsuho Uedaira, Akinori Sarai:
ProTherm: Thermodynamic Database for Proteins and Mutants. Nucleic Acids Res. 27(1): 286-288 (1999)
Conference and Workshop Papers
- 2006
- [c2]Marcos J. Araúzo-Bravo, Satoshi Fujii, Hidetoshi Kono, Akinori Sarai:
Disentangling the Role of Tetranucleotide in the Sequence-Dependence of DNA Conformation: A Molecular Dynamics Approach. APBC 2006: 227-236 - 2004
- [c1]Akinori Sarai, Samuel Selvaraj, M. Michael Gromiha, Hidetoshi Kono:
Structure-Function Relationship in DNA Sequence Recognition by Transcription Factors. APBC 2004: 233-238
Coauthor Index
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