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Journal Articles
- 2016
[j16]Karina Yusim, Hyejin Yoon, Brian T. Foley
, Shihai Feng, Jennifer Macke, Mira Dimitrijevic, Werner Abfalterer, James Szinger, Will Fischer, Carla Kuiken, Bette T. Korber:
Integrated sequence and immunology filovirus database at Los Alamos. Database J. Biol. Databases Curation 2016 (2016)- [j15]Jianhui Tian, Cesar A. López, Cynthia A. Derdeyn, Morris S. Jones, Abraham Pinter, Bette T. Korber, S. Gnanakaran:
Effect of Glycosylation on an Immunodominant Region in the V1V2 Variable Domain of the HIV-1 Envelope gp120 Protein. PLoS Comput. Biol. 12(10) (2016) - 2015
- [j14]Hyejin Yoon, Jennifer Macke, Anthony P. West Jr., Brian T. Foley, Pamela J. Bjorkman, Bette T. Korber, Karina Yusim:
CATNAP: a tool to compile, analyze and tally neutralizing antibody panels. Nucleic Acids Res. 43(Webserver-Issue): W213-W219 (2015) - 2013
- [j13]Johanna Brodin, Mohan Krishnamoorthy, Gayathri Athreya, Will Fischer, Peter T. Hraber, Cheryl Gleasner, Lance Green, Bette T. Korber, Thomas Leitner:
A multiple-alignment based primer design algorithm for genetically highly variable DNA targets. BMC Bioinform. 14: 255 (2013) - [j12]Anurag Sethi, Jianhui Tian, Cynthia A. Derdeyn, Bette T. Korber, S. Gnanakaran:
A Mechanistic Understanding of Allosteric Immune Escape Pathways in the HIV-1 Envelope Glycoprotein. PLoS Comput. Biol. 9(5) (2013) - 2010
- [j11]Ingo Bulla, Anne-Kathrin Schultz, Fabian Schreiber, Ming Zhang, Thomas Leitner, Bette T. Korber, Burkhard Morgenstern, Mario Stanke:
HIV classification using the coalescent theory. Bioinform. 26(11): 1409-1415 (2010) - [j10]Elena E. Giorgi, Bob Funkhouser, Gayathri Athreya, Alan S. Perelson, Bette T. Korber, Tanmoy Bhattacharya:
Estimating time since infection in early homogeneous HIV-1 samples using a poisson model. BMC Bioinform. 11: 532 (2010) - [j9]S. Gnanakaran, Marcus G. Daniels, Tanmoy Bhattacharya, Alan S. Lapedes, Anurag Sethi, Ming Li, Haili Tang, Kelli Greene, Hongmei Gao, Barton F. Haynes, Myron S. Cohen, George M. Shaw, Michael S. Seaman, Amit Kumar, Feng Gao, David C. Montefiori, Bette T. Korber:
Genetic Signatures in the Envelope Glycoproteins of HIV-1 that Associate with Broadly Neutralizing Antibodies. PLoS Comput. Biol. 6(10) (2010) - 2009
- [j8]Anne-Kathrin Schultz, Ming Zhang, Ingo Bulla, Thomas Leitner, Bette T. Korber, Burkhard Morgenstern, Mario Stanke:
jpHMM: Improving the reliability of recombination prediction in HIV-1. Nucleic Acids Res. 37(Web-Server-Issue): 647-651 (2009) - 2008
- [j7]James Thurmond, Hyejin Yoon, Carla Kuiken, Karina Yusim, Simon Perkins, James Theiler, Tanmoy Bhattacharya, Bette T. Korber, Will Fischer:
Web-based design and evaluation of T-cell vaccine candidates. Bioinform. 24(14): 1639-1640 (2008) - [j6]Will Fischer, H. X. Liao, Barton F. Haynes, Norman L. Letvin, Bette T. Korber:
Coping with Viral Diversity in HIV Vaccine Design: A Response to Nickle et al. PLoS Comput. Biol. 4(1) (2008) - 2006
- [j5]Anne-Kathrin Schultz, Ming Zhang, Thomas Leitner, Carla Kuiken, Bette T. Korber, Burkhard Morgenstern, Mario Stanke:
A jumping profile Hidden Markov Model and applications to recombination sites in HIV and HCV genomes. BMC Bioinform. 7: 265 (2006) - [j4]Ming Zhang, Anne-Kathrin Schultz, Charles Calef, Carla Kuiken, Thomas Leitner, Bette T. Korber, Burkhard Morgenstern, Mario Stanke:
jpHMM at GOBICS: a web server to detect genomic recombinations in HIV-1. Nucleic Acids Res. 34(Web-Server-Issue): 463-465 (2006) - [j3]Bette T. Korber, Montiago LaBute, Karina Yusim:
Immunoinformatics Comes of Age. PLoS Comput. Biol. 2(6) (2006) - 2001
- [j2]Brian Gaschen, Carla Kuiken, Bette T. Korber, Brian T. Foley:
Retrieval and on-the-fly alignment of sequence fragments from the HIV database. Bioinform. 17(5): 415-418 (2001) - 2000
- [j1]Patrick P. Rose, Bette T. Korber:
Detecting hypermutations in viral sequences with an emphasis on G A hypermutation. Bioinform. 16(4): 400-401 (2000)
Conference and Workshop Papers
- 2006
- [c1]Peter T. Hraber, Bette T. Korber, Steven Wolinsky, Henry A. Erlich, Elizabeth A. Trachtenberg, Thomas B. Kepler:
HLA and HIV Infection Progression: Application of the Minimum Description Length Principle to Statistical Genetics. ISBMDA 2006: 1-12
Informal and Other Publications
- 2005
- [i1]Peter T. Hraber, Bette T. Korber, Steven Wolinsky, Henry A. Erlich, Elizabeth A. Trachtenberg, Thomas B. Kepler:
HLA and HIV Infection Progression: Application of the Minimum Description Length Principle to Statistical Genetics. CoRR abs/q-bio/0505050 (2005)
Coauthor Index
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