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ORCIDCarito Guziolowski
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2020 – today
- 2024
[b2]Carito Guziolowski:
Modeling Biological Networks as Logic Programs. (Modélisation de réseaux biologiques à l'aide des programmes logiques). Nantes University, France, 2024- [j20]Mathieu Bolteau
, Lokmane Chebouba, Laurent David, Jérémie Bourdon, Carito Guziolowski:
Boolean Network Models of Human Preimplantation Development. J. Comput. Biol. 31(6): 513-523 (2024) - 2023
- [j19]Sophie Le Bars, Mathieu Bolteau, Jérémie Bourdon, Carito Guziolowski:
Predicting weighted unobserved nodes in a regulatory network using answer set programming. BMC Bioinform. 24(1): 321 (2023) - [c10]Mathieu Bolteau, Jérémie Bourdon, Laurent David, Carito Guziolowski:
Inferring Boolean Networks from Single-Cell Human Embryo Datasets. ISBRA 2023: 431-441 - 2021
- [j18]Marie Lefebvre, Alban Gaignard, Maxime Folschette, Jérémie Bourdon, Carito Guziolowski:
Large-scale regulatory and signaling network assembly through linked open data. Database J. Biol. Databases Curation 2021 (2021) - 2020
- [j17]Maxime Folschette, Vincent Legagneux, Arnaud Poret, Lokmane Chebouba, Carito Guziolowski, Nathalie Théret:
A pipeline to create predictive functional networks: application to the tumor progression of hepatocellular carcinoma. BMC Bioinform. 21(1): 18 (2020) - [c9]Sophie Le Bars, Jérémie Bourdon, Carito Guziolowski:
Comparing Probabilistic and Logic Programming Approaches to Predict the Effects of Enzymes in a Neurodegenerative Disease Model. CMSB 2020: 141-156
2010 – 2019
- 2019
- [p1]Misbah Razzaq, Lokmane Chebouba, Pierre Le Jeune, Hanen Mhamdi, Carito Guziolowski, Jérémie Bourdon:
Logic and Linear Programs to Understand Cancer Response. Automated Reasoning for Systems Biology and Medicine 2019: 191-213 - 2018
- [j16]Lokmane Chebouba, Bertrand Miannay, Dalila Boughaci, Carito Guziolowski:
Discriminate the response of Acute Myeloid Leukemia patients to treatment by using proteomics data and Answer Set Programming. BMC Bioinform. 19-S(2): 15-26 (2018) - [j15]Bertrand Miannay, Stéphane Minvielle, Florence Magrangeas, Carito Guziolowski:
Constraints on signaling network logic reveal functional subgraphs on Multiple Myeloma OMIC data. BMC Syst. Biol. 12(3): 25-37 (2018) - [j14]Lokmane Chebouba, Dalila Boughaci, Carito Guziolowski:
Proteomics Versus Clinical Data and Stochastic Local Search Based Feature Selection for Acute Myeloid Leukemia Patients' Classification. J. Medical Syst. 42(7): 129:1-129:8 (2018) - [j13]Misbah Razzaq, Loïc Paulevé, Anne Siegel, Julio Saez-Rodriguez, Jérémie Bourdon, Carito Guziolowski:
Computational discovery of dynamic cell line specific Boolean networks from multiplex time-course data. PLoS Comput. Biol. 14(10) (2018) - [c8]Misbah Razzaq, Roland Kaminski, Javier Romero, Torsten Schaub, Jérémie Bourdon, Carito Guziolowski:
Computing Diverse Boolean Networks from Phosphoproteomic Time Series Data. CMSB 2018: 59-74 - 2017
- [j12]Louis Fippo Fitime, Olivier F. Roux, Carito Guziolowski, Loïc Paulevé:
Identification of bifurcation transitions in biological regulatory networks using Answer-Set Programming. Algorithms Mol. Biol. 12(1): 19:1-19:14 (2017) - [j11]Santiago Videla, Julio Saez-Rodriguez, Carito Guziolowski, Anne Siegel:
caspo: a toolbox for automated reasoning on the response of logical signaling networks families. Bioinform. 33(6): 947-950 (2017) - [c7]Bertrand Miannay, Stéphane Minvielle, Olivier Roux, Florence Magrangeas, Carito Guziolowski:
Constraints On Signaling Networks Logic Reveal Functional Subgraphs On Multiple Myeloma OMIC Data. BCB 2017: 768-769 - 2016
- [j10]Max Ostrowski, Loïc Paulevé, Torsten Schaub, Anne Siegel, Carito Guziolowski:
Boolean network identification from perturbation time series data combining dynamics abstraction and logic programming. Biosyst. 149: 139-153 (2016) - [j9]Vicente Acuña, Andrés Aravena, Carito Guziolowski, Damien Eveillard, Anne Siegel, Alejandro Maass:
Deciphering transcriptional regulations coordinating the response to environmental changes. BMC Bioinform. 17: 35 (2016) - 2015
- [j8]Sven Thiele, Luca Cerone, Julio Saez-Rodriguez, Anne Siegel, Carito Guziolowski, Steffen Klamt:
Extended notions of sign consistency to relate experimental data to signaling and regulatory network topologies. BMC Bioinform. 16: 345:1-345:13 (2015) - [j7]Santiago Videla, Carito Guziolowski, Federica Eduati, Sven Thiele, Martin Gebser, Jacques Nicolas, Julio Saez-Rodriguez, Torsten Schaub, Anne Siegel:
Learning Boolean logic models of signaling networks with ASP. Theor. Comput. Sci. 599: 79-101 (2015) - [c6]Max Ostrowski, Loïc Paulevé, Torsten Schaub, Anne Siegel, Carito Guziolowski:
Boolean Network Identification from Multiplex Time Series Data. CMSB 2015: 170-181 - [c5]Louis Fippo Fitime, Christian Schuster, Peter Angel, Olivier Roux, Carito Guziolowski:
Integrating Time-Series Data in Large-Scale Discrete Cell-Based Models. HSB 2015: 75-95 - 2014
- [j6]Carito Guziolowski, Santiago Videla, Federica Eduati, Sven Thiele, Thomas Cokelaer, Anne Siegel, Julio Saez-Rodriguez:
Exhaustively characterizing feasible logic models of a signaling network using Answer Set Programming. Bioinform. 30(13): 1942 (2014) - 2013
- [j5]Carito Guziolowski, Santiago Videla, Federica Eduati, Sven Thiele, Thomas Cokelaer, Anne Siegel, Julio Saez-Rodriguez:
Exhaustively characterizing feasible logic models of a signaling network using Answer Set Programming. Bioinform. 29(18): 2320-2326 (2013) - 2012
- [c4]Santiago Videla, Carito Guziolowski, Federica Eduati, Sven Thiele, Niels Grabe, Julio Saez-Rodriguez, Anne Siegel:
Revisiting the Training of Logic Models of Protein Signaling Networks with ASP. CMSB 2012: 342-361 - [i1]Santiago Videla, Carito Guziolowski, Federica Eduati, Sven Thiele, Niels Grabe, Julio Saez-Rodriguez, Anne Siegel:
Revisiting the Training of Logic Models of Protein Signaling Networks with a Formal Approach based on Answer Set Programming. CoRR abs/1210.0690 (2012) - 2011
- [j4]Carito Guziolowski, Sylvain Blachon, Tatiana Baumuratova, Gautier Stoll, Ovidiu Radulescu, Anne Siegel:
Designing Logical Rules to Model the Response of Biomolecular Networks with Complex Interactions: An Application to Cancer Modeling. IEEE ACM Trans. Comput. Biol. Bioinform. 8(5): 1223-1234 (2011) - 2010
- [b1]Carito Guziolowski:
Analysis of Large-Scale Biological Networks with Constraint-Based Approaches over Static Models. University of Rennes 1, France, 2010 - [c3]Martin Gebser, Carito Guziolowski, Mihail Ivanchev, Torsten Schaub, Anne Siegel, Sven Thiele, Philippe Veber:
Repair and Prediction (under Inconsistency) in Large Biological Networks with Answer Set Programming. KR 2010
2000 – 2009
- 2009
- [c2]Sylvain Blachon, Gautier Stoll, Carito Guziolowski, Andrei Yu. Zinovyev, Emmanuel Barillot, Anne Siegel, Ovidiu Radulescu:
Method for Relating Inter-patient Gene Copy Numbers Variations with Gene Expression via Gene Influence Networks. AIAI Workshops 2009: 72-87 - 2008
- [j3]Philippe Veber, Carito Guziolowski, Michel Le Borgne, Ovidiu Radulescu, Anne Siegel:
Inferring the role of transcription factors in regulatory networks. BMC Bioinform. 9 (2008) - [c1]Carito Guziolowski, Jeremy Gruel, Ovidiu Radulescu, Anne Siegel:
Curating a Large-Scale Regulatory Network by Evaluating Its Consistency with Expression Datasets. CIBB 2008: 144-155 - 2007
- [j2]Gilles Didier, Carito Guziolowski:
Mapping sequences by parts. Algorithms Mol. Biol. 2 (2007) - 2006
- [j1]Mariano Latorre, Herman Silva, Juan Saba, Carito Guziolowski, Paula Vizoso, Veronica Martinez, Jonathan Maldonado, Andrea Morales, Rodrigo Caroca, Veronica Cambiazo, Reinaldo Campos-Vargas, Mauricio Gonzalez, Ariel Orellana, Julio Retamales, Lee A. Meisel:
JUICE: a data management system that facilitates the analysis of large volumes of information in an EST project workflow. BMC Bioinform. 7: 513 (2006)
Coauthor Index
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