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ORCID16th CMSB 2018: Brno, Czech Republic
- Milan Ceska, David Safránek:
Computational Methods in Systems Biology - 16th International Conference, CMSB 2018, Brno, Czech Republic, September 12-14, 2018, Proceedings. Lecture Notes in Computer Science 11095, Springer 2018, ISBN 978-3-319-99428-4
Regular Papers
- Samuel M. D. Oliveira
, Mohamed N. M. Bahrudeen, Sofia Startceva, Vinodh Kandavalli, Andre S. Ribeiro:
Modeling and Engineering Promoters with Pre-defined RNA Production Dynamics in Escherichia Coli. 3-20 - Luca Bortolussi, Luca Palmieri:
Deep Abstractions of Chemical Reaction Networks. 21-38 - Timothy Self, David R. Gilbert, Monika Heiner:
Derivation of a Biomass Proxy for Dynamic Analysis of Whole Genome Metabolic Models. 39-58 - Misbah Razzaq, Roland Kaminski, Javier Romero, Torsten Schaub, Jérémie Bourdon, Carito Guziolowski:
Computing Diverse Boolean Networks from Phosphoproteomic Time Series Data. 59-74 - Emine Güven, Michael J. Wester, Bridget S. Wilson, Jeremy S. Edwards, Ádám M. Halász:
Characterization of the Experimentally Observed Clustering of VEGF Receptors. 75-92 - Ashutosh Gupta, Somya Mani, Ankit Shukla:
Synthesis for Vesicle Traffic Systems. 93-110 - Hillel Kugler, Sara-Jane Dunn, Boyan Yordanov:
Formal Analysis of Network Motifs. 111-128 - Pavol Bokes, Michal Hojcka, Abhyudai Singh:
Buffering Gene Expression Noise by MicroRNA Based Feedforward Regulation. 129-145 - Jeremy Revell, Paolo Zuliani:
Stochastic Rate Parameter Inference Using the Cross-Entropy Method. 146-164 - Alessandro Abate, Luca Cardelli, Marta Kwiatkowska, Luca Laurenti, Boyan Yordanov:
Experimental Biological Protocols with Formal Semantics. 165-182 - Souradeep Dutta, Taisa Kushner, Sriram Sankaranarayanan:
Robust Data-Driven Control of Artificial Pancreas Systems Using Neural Networks. 183-202 - Keenan Breik, Cameron T. Chalk, David Doty, David Haley, David Soloveichik:
Programming Substrate-Independent Kinetic Barriers with Thermodynamic Binding Networks. 203-219 - Jonathan Laurent, Héctor F. Medina-Abarca, Pierre Boutillier, Jean Yang, Walter Fontana:
A Trace Query Language for Rule-Based Models. 220-237 - Akos Vertes, Albert-Baskar Arul, Peter Avar, Andrew R. Korte, Hang Li, Peter Nemes, Lida Parvin, Sylwia Stopka, Sunil Hwang, Ziad J. Sahab, Linwen Zhang, Deborah I. Bunin, Merrill Knapp, Andrew Poggio, Mark-Oliver Stehr, Carolyn L. Talcott, Brian M. Davis, Sean R. Dinn, Christine A. Morton, Christopher J. Sevinsky, Maria I. Zavodszky:
Inferring Mechanism of Action of an Unknown Compound from Time Series Omics Data. 238-255 - Cameron T. Chalk, Niels Kornerup, Wyatt Reeves, David Soloveichik:
Composable Rate-Independent Computation in Continuous Chemical Reaction Networks. 256-273
Tool Papers
- Andrzej Mizera, Jun Pang, Hongyang Qu, Qixia Yuan:
ASSA-PBN 3.0: Analysing Context-Sensitive Probabilistic Boolean Networks. 277-284 - Pierre Boutillier, Ferdinanda Camporesi, Jean Coquet, Jérôme Feret, Kim Quyên Lý, Nathalie Théret, Pierre Vignet:
KaSa: A Static Analyzer for Kappa. 285-291 - François Fages, Sylvain Soliman:
On Robustness Computation and Optimization in BIOCHAM-4. 292-299 - Justin Feigelman, Daniel Weindl, Fabian J. Theis, Carsten Marr, Jan Hasenauer:
LNA++: Linear Noise Approximation with First and Second Order Sensitivities. 300-306
Poster Abstracts
- Martin Modrák:
Reparametrizing the Sigmoid Model of Gene Regulation for Bayesian Inference. 309-312 - Soumya Paul, Jun Pang, Cui Su:
On the Full Control of Boolean Networks. 313-317 - Golestan Sally Radwan, Hugh P. Shanahan:
Systems Metagenomics: Applying Systems Biology Thinking to Human Microbiome Analysis. 318-321
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