default search action

combined dblp search
author search
venue search
publication search

ask others

Jakob L. Andersen

Jakob Lykke Andersen

> Home > Persons

Person information

Refine list

refinements active!

zoomed in on ?? of ?? records

view refined list in

export refined list as

showing all ?? records

2020 – today

see FAQ

What is the meaning of the colors in the publication lists?

2024
[j11]
- view
  authority control:
- export record
  dblp key:
  - journals/jcb/EriksenAFM24
- ask others
- share record
  persistent URL:
  - https://dblp.org/rec/journals/jcb/EriksenAFM24
Casper Asbjørn Eriksen, Jakob Lykke Andersen, Rolf Fagerberg, Daniel Merkle:
Toward the Reconciliation of Inconsistent Molecular Structures from Biochemical Databases. J. Comput. Biol. 31(6): 498-512 (2024)
[j10]
- view
  - electronic edition via DOI (open access)
  - references & citations
  authority control:
- export record
  dblp key:
  - journals/jcheminf/PhanWGMAFS24
- ask others
- share record
  persistent URL:
  - https://dblp.org/rec/journals/jcheminf/PhanWGMAFS24
Tieu-Long Phan, Klaus Weinbauer, Thomas Gärtner, Daniel Merkle, Jakob L. Andersen, Rolf Fagerberg, Peter F. Stadler:
Reaction rebalancing: a novel approach to curating reaction databases. J. Cheminformatics 16(1): 82 (2024)
[i18]
- view
  - electronic edition via DOI (open access)
  - references & citations
  authority control:
- export record
  dblp key:
  - journals/corr/abs-2404-02692
- ask others
- share record
  persistent URL:
  - https://dblp.org/rec/journals/corr/abs-2404-02692
Jakob L. Andersen, Akbar Davoodi, Rolf Fagerberg, Christoph Flamm, Walter Fontana, Juraj Kolcák, Christophe V. F. P. Laurent, Daniel Merkle, Nikolai Nøjgaard:
Automated Inference of Graph Transformation Rules. CoRR abs/2404.02692 (2024)
2023
[c10]
- view
  authority control:
- export record
  dblp key:
  - conf/isbra/EriksenAFM23
- ask others
- share record
  persistent URL:
  - https://dblp.org/rec/conf/isbra/EriksenAFM23
Casper Asbjørn Eriksen, Jakob Lykke Andersen, Rolf Fagerberg, Daniel Merkle:
Reconciling Inconsistent Molecular Structures from Biochemical Databases. ISBRA 2023: 58-71
[c9]
- view
  authority control:
- export record
  dblp key:
  - conf/isbra/AndersenBFFMS23
- ask others
- share record
  persistent URL:
  - https://dblp.org/rec/conf/isbra/AndersenBFFMS23
Jakob L. Andersen, Sissel Banke, Rolf Fagerberg, Christoph Flamm, Daniel Merkle, Peter F. Stadler:
On the Realisability of Chemical Pathways. ISBRA 2023: 409-419
[i17]
- view
  - electronic edition via DOI (open access)
  - references & citations
  authority control:
- export record
  dblp key:
  - journals/corr/abs-2308-12735
- ask others
- share record
  persistent URL:
  - https://dblp.org/rec/journals/corr/abs-2308-12735
Casper Asbjørn Eriksen, Jakob Lykke Andersen, Rolf Fagerberg, Daniel Merkle:
Reconciling Inconsistent Molecular Structures from Biochemical Databases. CoRR abs/2308.12735 (2023)
[i16]
- view
  - electronic edition via DOI (open access)
  - references & citations
  authority control:
- export record
  dblp key:
  - journals/corr/abs-2309-10629
- ask others
- share record
  persistent URL:
  - https://dblp.org/rec/journals/corr/abs-2309-10629
Jakob L. Andersen, Sissel Banke, Rolf Fagerberg, Christoph Flamm, Daniel Merkle, Peter F. Stadler:
On the Realisability of Chemical Pathways. CoRR abs/2309.10629 (2023)
2022
[j9]
- view
  authority control:
- export record
  dblp key:
  - journals/jcisd/AndersenFFFKLMN22
- ask others
- share record
  persistent URL:
  - https://dblp.org/rec/journals/jcisd/AndersenFFFKLMN22
Jakob L. Andersen, Rolf Fagerberg, Christoph Flamm, Walter Fontana, Juraj Kolcák, Christophe V. F. P. Laurent, Daniel Merkle, Nikolai Nøjgaard:
Representing Catalytic Mechanisms with Rule Composition. J. Chem. Inf. Model. 62(22): 5513-5524 (2022)
[i15]
- view
  - electronic edition @ arxiv.org (open access)
  - references & citations
- export record
  dblp key:
  - journals/corr/abs-2201-04360
- ask others
- share record
  persistent URL:
  - https://dblp.org/rec/journals/corr/abs-2201-04360
Jakob L. Andersen, Rolf Fagerberg, Juraj Kolcák, Christophe V. F. P. Laurent, Daniel Merkle, Nikolai Nøjgaard:
Efficient Modular Graph Transformation Rule Application. CoRR abs/2201.04360 (2022)
[i14]
- view
  - electronic edition @ arxiv.org (open access)
  - references & citations
- export record
  dblp key:
  - journals/corr/abs-2201-04515
- ask others
- share record
  persistent URL:
  - https://dblp.org/rec/journals/corr/abs-2201-04515
Jakob L. Andersen, Rolf Fagerberg, Christoph Flamm, Walter Fontana, Juraj Kolcák, Christophe V. F. P. Laurent, Daniel Merkle, Nikolai Nøjgaard:
Characterizing Catalytic Mechanisms with Overlay Graphs. CoRR abs/2201.04515 (2022)
2021
[j8]
- view
  authority control:
- export record
  dblp key:
  - journals/bioinformatics/AndersenFFFKLMN21
- ask others
- share record
  persistent URL:
  - https://dblp.org/rec/journals/bioinformatics/AndersenFFFKLMN21
Jakob L. Andersen, Rolf Fagerberg, Christoph Flamm, Walter Fontana, Juraj Kolcák, Christophe V. F. P. Laurent, Daniel Merkle, Nikolai Nøjgaard:
Graph transformation for enzymatic mechanisms. Bioinform. 37(Supplement): 392-400 (2021)
[j7]
- view
  authority control:
- export record
  dblp key:
  - journals/tcs/BehrKAM21
- ask others
- share record
  persistent URL:
  - https://dblp.org/rec/journals/tcs/BehrKAM21
Nicolas Behr, Jean Krivine, Jakob L. Andersen, Daniel Merkle:
Rewriting theory for the life sciences: A unifying theory of CTMC semantics. Theor. Comput. Sci. 884: 68-115 (2021)
[i13]
- view
  - electronic edition @ arxiv.org (open access)
  - references & citations
- export record
  dblp key:
  - journals/corr/abs-2102-03292
- ask others
- share record
  persistent URL:
  - https://dblp.org/rec/journals/corr/abs-2102-03292
Jakob L. Andersen, Rolf Fagerberg, Christoph Flamm, Walter Fontana, Juraj Kolcák, Christophe V. F. P. Laurent, Daniel Merkle, Nikolai Nøjgaard:
Graph Transformation for Enzymatic Mechanisms. CoRR abs/2102.03292 (2021)
[i12]
- view
  - electronic edition @ arxiv.org (open access)
  - references & citations
- export record
  dblp key:
  - journals/corr/abs-2106-02573
- ask others
- share record
  persistent URL:
  - https://dblp.org/rec/journals/corr/abs-2106-02573
Nicolas Behr, Jean Krivine, Jakob L. Andersen, Daniel Merkle:
Rewriting Theory for the Life Sciences: A Unifying Theory of CTMC Semantics (Long version). CoRR abs/2106.02573 (2021)
[i11]
- view
  - electronic edition @ arxiv.org (open access)
  - references & citations
- export record
  dblp key:
  - journals/corr/abs-2107-03086
- ask others
- share record
  persistent URL:
  - https://dblp.org/rec/journals/corr/abs-2107-03086
Jakob L. Andersen, Christoph Flamm, Daniel Merkle, Peter F. Stadler:
Defining Autocatalysis in Chemical Reaction Networks. CoRR abs/2107.03086 (2021)
2020
[j6]
- view
  authority control:
- export record
  dblp key:
  - journals/jcb/AndersenMR20
- ask others
- share record
  persistent URL:
  - https://dblp.org/rec/journals/jcb/AndersenMR20
Jakob L. Andersen, Daniel Merkle, Peter S. Rasmussen:
Combining Graph Transformations and Semigroups for Isotopic Labeling Design. J. Comput. Biol. 27(2): 269-287 (2020)
[j5]
- view
  authority control:
- export record
  dblp key:
  - journals/jea/AndersenM20
- ask others
- share record
  persistent URL:
  - https://dblp.org/rec/journals/jea/AndersenM20
Jakob L. Andersen, Daniel Merkle:
A Generic Framework for Engineering Graph Canonization Algorithms. ACM J. Exp. Algorithmics 25: 1-26 (2020)
[c8]
- view
  - electronic edition @ ceur-ws.org (open access)
  - no references & citations available
- export record
  dblp key:
  - conf/sofsem/AndersenHMNP20
- ask others
- share record
  persistent URL:
  - https://dblp.org/rec/conf/sofsem/AndersenHMNP20
Jakob Lykke Andersen, Marc Hellmuth, Daniel Merkle, Nikolai Nøjgaard, Marco Peressotti:
A Graph-Based Tool to Embed the π-Calculus into a Computational DPO Framework. SOFSEM (Doctoral Student Research Forum) 2020: 121-132
[c7]
- view
  authority control:
- export record
  dblp key:
  - conf/wob/SilvaAAWBSF20
- ask others
- share record
  persistent URL:
  - https://dblp.org/rec/conf/wob/SilvaAAWBSF20
Waldeyr Mendes Cordeiro da Silva, Daniela P. de Andrade, Jakob L. Andersen, Maria Emília Telles Walter, Marcelo M. Brigido, Peter F. Stadler, Christoph Flamm:
Computational Simulations for Cyclizations Catalyzed by Plant Monoterpene Synthases. BSB 2020: 247-258

2010 – 2019

see FAQ

What is the meaning of the colors in the publication lists?

2019
[j4]
- view
  authority control:
- export record
  dblp key:
  - journals/tcbb/AndersenFMS19
- ask others
- share record
  persistent URL:
  - https://dblp.org/rec/journals/tcbb/AndersenFMS19
Jakob L. Andersen, Christoph Flamm, Daniel Merkle, Peter F. Stadler:
Chemical Transformation Motifs - Modelling Pathways as Integer Hyperflows. IEEE ACM Trans. Comput. Biol. Bioinform. 16(2): 510-523 (2019)
[c6]
- view
  authority control:
- export record
  dblp key:
  - conf/isbra/AndersenMR19
- ask others
- share record
  persistent URL:
  - https://dblp.org/rec/conf/isbra/AndersenMR19
Jakob L. Andersen, Daniel Merkle, Peter S. Rasmussen:
Graph Transformations, Semigroups, and Isotopic Labeling. ISBRA 2019: 196-207
[i10]
- view
  - electronic edition @ arxiv.org (open access)
  - references & citations
- export record
  dblp key:
  - journals/corr/abs-1911-00407
- ask others
- share record
  persistent URL:
  - https://dblp.org/rec/journals/corr/abs-1911-00407
Jakob Lykke Andersen, Marc Hellmuth, Daniel Merkle, Nikolai Nøjgaard, Marco Peressotti:
A Graph-Based Tool to Embed the π-Calculus into a Computational DPO Framework. CoRR abs/1911.00407 (2019)
2018
[c5]
- view
  authority control:
- export record
  dblp key:
  - conf/alenex/AndersenM18
- ask others
- share record
  persistent URL:
  - https://dblp.org/rec/conf/alenex/AndersenM18
Jakob L. Andersen, Daniel Merkle:
A Generic Framework for Engineering Graph Canonization Algorithms. ALENEX 2018: 139-153
2017
[c4]
- view
  authority control:
- export record
  dblp key:
  - conf/gg/AndersenFMS17
- ask others
- share record
  persistent URL:
  - https://dblp.org/rec/conf/gg/AndersenFMS17
Jakob Lykke Andersen, Christoph Flamm, Daniel Merkle, Peter F. Stadler:
Chemical Graph Transformation with Stereo-Information. ICGT 2017: 54-69
[i9]
- view
  - electronic edition @ arxiv.org (open access)
  - references & citations
- export record
  dblp key:
  - journals/corr/AndersenFMS17
- ask others
- share record
  persistent URL:
  - https://dblp.org/rec/journals/corr/AndersenFMS17
Jakob L. Andersen, Christoph Flamm, Daniel Merkle, Peter F. Stadler:
An Intermediate Level of Abstraction for Computational Systems Chemistry. CoRR abs/1701.09097 (2017)
[i8]
- view
  - electronic edition @ arxiv.org (open access)
  - references & citations
- export record
  dblp key:
  - journals/corr/abs-1711-08289
- ask others
- share record
  persistent URL:
  - https://dblp.org/rec/journals/corr/abs-1711-08289
Jakob L. Andersen, Daniel Merkle:
A Generic Framework for Engineering Graph Canonization Algorithms. CoRR abs/1711.08289 (2017)
[i7]
- view
  - electronic edition @ arxiv.org (open access)
  - references & citations
- export record
  dblp key:
  - journals/corr/abs-1712-02594
- ask others
- share record
  persistent URL:
  - https://dblp.org/rec/journals/corr/abs-1712-02594
Jakob L. Andersen, Christoph Flamm, Daniel Merkle, Peter F. Stadler:
Chemical Transformation Motifs - Modelling Pathways as Integer Hyperflows. CoRR abs/1712.02594 (2017)
[i6]
- view
  - electronic edition via DOI (open access)
  - references & citations
  authority control:
- export record
  dblp key:
  - journals/dagstuhl-reports/AndersenFMS17
- ask others
- share record
  persistent URL:
  - https://dblp.org/rec/journals/dagstuhl-reports/AndersenFMS17
Jakob L. Andersen, Christoph Flamm, Daniel Merkle, Peter F. Stadler:
Algorithmic Cheminformatics (Dagstuhl Seminar 17452). Dagstuhl Reports 7(11): 28-45 (2017)
2016
[b1]
- view
  authority control:
- export record
  dblp key:
  - phd/basesearch/Andersen16
- ask others
- share record
  persistent URL:
  - https://dblp.org/rec/phd/basesearch/Andersen16
Jakob Lykke Andersen:
Analysis of Generative Chemistries. Leipzig University, Germany, 2016
[c3]
- view
  authority control:
- export record
  dblp key:
  - conf/gg/AndersenFMS16
- ask others
- share record
  persistent URL:
  - https://dblp.org/rec/conf/gg/AndersenFMS16
Jakob L. Andersen, Christoph Flamm, Daniel Merkle, Peter F. Stadler:
A Software Package for Chemically Inspired Graph Transformation. ICGT 2016: 73-88
[i5]
- view
  - electronic edition @ arxiv.org (open access)
  - references & citations
- export record
  dblp key:
  - journals/corr/AndersenFMS16
- ask others
- share record
  persistent URL:
  - https://dblp.org/rec/journals/corr/AndersenFMS16
Jakob L. Andersen, Christoph Flamm, Daniel Merkle, Peter F. Stadler:
A Software Package for Chemically Inspired Graph Transformation. CoRR abs/1603.02481 (2016)
2015
[j3]
- view
  - electronic edition @ oldcitypublishing.com
  - no references & citations available
- export record
  dblp key:
  - journals/ijuc/AndersenFHM15
- ask others
- share record
  persistent URL:
  - https://dblp.org/rec/journals/ijuc/AndersenFHM15
Jakob L. Andersen, Christoph Flamm, Martin M. Hanczyc, Daniel Merkle:
Towards Optimal DNA-Templated Computing. Int. J. Unconv. Comput. 11(3-4): 185-203 (2015)
[i4]
- view
  - electronic edition @ arxiv.org (open access)
  - references & citations
- export record
  dblp key:
  - journals/corr/AndersenFMS15
- ask others
- share record
  persistent URL:
  - https://dblp.org/rec/journals/corr/AndersenFMS15
Jakob L. Andersen, Christoph Flamm, Daniel Merkle, Peter F. Stadler:
Support for Eschenmoser's Glyoxylate Scenario. CoRR abs/1502.07555 (2015)
2014
[j2]
- view
  authority control:
- export record
  dblp key:
  - journals/ijcbdd/AndersenFMS14
- ask others
- share record
  persistent URL:
  - https://dblp.org/rec/journals/ijcbdd/AndersenFMS14
Jakob L. Andersen, Christoph Flamm, Daniel Merkle, Peter F. Stadler:
Generic strategies for chemical space exploration. Int. J. Comput. Biol. Drug Des. 7(2/3): 225-258 (2014)
[c2]
- view
  authority control:
- export record
  dblp key:
  - conf/alife/AndersenFHM14
- ask others
- share record
  persistent URL:
  - https://dblp.org/rec/conf/alife/AndersenFHM14
Jakob L. Andersen, Christoph Flamm, Martin M. Hanczyc, Daniel Merkle:
Towards an Optimal DNA-Templated Molecular Assembler. ALIFE 2014: 557-564
[c1]
- view
  authority control:
- export record
  dblp key:
  - conf/fmmb/AndersenFMS14
- ask others
- share record
  persistent URL:
  - https://dblp.org/rec/conf/fmmb/AndersenFMS14
Jakob Lykke Andersen, Christoph Flamm, Daniel Merkle, Peter F. Stadler:
50 Shades of Rule Composition - From Chemical Reactions to Higher Levels of Abstraction. FMMB 2014: 117-135
2013
[j1]
- view
  - electronic edition via DOI (open access)
  - references & citations
  authority control:
- export record
  dblp key:
  - journals/entropy/AndersenAFHMS13
- ask others
- share record
  persistent URL:
  - https://dblp.org/rec/journals/entropy/AndersenAFHMS13
Jakob L. Andersen, Tommy Andersen, Christoph Flamm, Martin M. Hanczyc, Daniel Merkle, Peter F. Stadler:
Navigating the Chemical Space of HCN Polymerization and Hydrolysis: Guiding Graph Grammars by Mass Spectrometry Data. Entropy 15(10): 4066-4083 (2013)
[i3]
- view
  - electronic edition @ arxiv.org (open access)
  - references & citations
- export record
  dblp key:
  - journals/corr/abs-1302-4006
- ask others
- share record
  persistent URL:
  - https://dblp.org/rec/journals/corr/abs-1302-4006
Jakob L. Andersen, Christoph Flamm, Daniel Merkle, Peter F. Stadler:
Generic Strategies for Chemical Space Exploration. CoRR abs/1302.4006 (2013)
2012
[i2]
- view
  - electronic edition @ arxiv.org (open access)
  - references & citations
- export record
  dblp key:
  - journals/corr/abs-1208-3153
- ask others
- share record
  persistent URL:
  - https://dblp.org/rec/journals/corr/abs-1208-3153
Jakob L. Andersen, Christoph Flamm, Daniel Merkle, Peter F. Stadler:
Inferring Chemical Reaction Patterns Using Rule Composition in Graph Grammars. CoRR abs/1208.3153 (2012)
2011
[i1]
- view
  - electronic edition @ arxiv.org (open access)
  - references & citations
- export record
  dblp key:
  - journals/corr/abs-1110-6051
- ask others
- share record
  persistent URL:
  - https://dblp.org/rec/journals/corr/abs-1110-6051
Jakob L. Andersen, Christoph Flamm, Daniel Merkle, Peter F. Stadler:
Maximizing Output and Recognizing Autocatalysis in Chemical Reaction Networks is NP-Complete. CoRR abs/1110.6051 (2011)

Coauthor Index

see FAQ

manage site settings

To protect your privacy, all features that rely on external API calls from your browser are turned off by default. You need to opt-in for them to become active. All settings here will be stored as cookies with your web browser. For more information see our F.A.Q.