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ORCIDPeter F. Stadler
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- affiliation: University of Leipzig, Department of Computer Science
- affiliation: University of Vienna, Institute for Theoretical Chemistry
- affiliation: Max Planck Institute for Biophysical Chemistry
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2020 – today
- 2022
[j221]Tom Hartmann, Max Bannach, Martin Middendorf, Peter F. Stadler, Nicolas Wieseke, Marc Hellmuth
:
Complete edge-colored permutation graphs. Adv. Appl. Math. 139: 102377 (2022)- [j220]Anahy Santiago Arguello, Peter F. Stadler:
Whitney's connectivity inequalities for directed hypergraphs. Art Discret. Appl. Math. 5(1) (2022) - [j219]Peter F. Stadler, Sebastian Will:
Bi-alignments with affine gaps costs. Algorithms Mol. Biol. 17(1): 10 (2022) - [j218]Robson Bonidia, Anderson P. Avila-Santos, Breno Lívio Silva de Almeida, Peter F. Stadler, Ulisses Nunes da Rocha, Danilo Sipoli Sanches, André C. P. L. F. de Carvalho:
BioAutoML: automated feature engineering and metalearning to predict noncoding RNAs in bacteria. Briefings Bioinform. 23(4) (2022) - [j217]Grover E. C. Guzman, Peter F. Stadler, André Fujita:
Efficient eigenvalue counts for tree-like networks. J. Complex Networks 10(5) (2022) - [j216]Carmen Bruckmann, Peter F. Stadler, Marc Hellmuth:
From modular decomposition trees to rooted median graphs. Discret. Appl. Math. 310: 1-9 (2022) - [j215]Marc Hellmuth, David Schaller, Peter F. Stadler:
Compatibility of partitions with trees, hierarchies, and split systems. Discret. Appl. Math. 314: 265-283 (2022) - [j214]Robson Parmezan Bonidia, Anderson P. Avila-Santos, Breno Lívio Silva de Almeida, Peter F. Stadler, Ulisses Nunes da Rocha, Danilo Sipoli Sanches, André C. P. L. F. de Carvalho:
Information Theory for Biological Sequence Classification: A Novel Feature Extraction Technique Based on Tsallis Entropy. Entropy 24(10): 1398 (2022) - [j213]Stefan Müller, Christoph Flamm, Peter F. Stadler:
What makes a reaction network "chemical"? J. Cheminformatics 14(1): 63 (2022) - [j212]Franziska Reinhardt, Peter F. Stadler:
ExceS-A: an exon-centric split aligner. J. Integr. Bioinform. 19(1) (2022) - [j211]Christoph Flamm, Marc Hellmuth, Daniel Merkle, Nikolai Nøjgaard, Peter F. Stadler:
Generic Context-Aware Group Contributions. IEEE ACM Trans. Comput. Biol. Bioinform. 19(1): 429-442 (2022) - [c66]Dustyn Eggers, Christian Höner zu Siederdissen, Peter F. Stadler:
Accuracy of RNA Structure Prediction Depends on the Pseudoknot Grammar. BSB 2022: 20-31 - [i53]Marc Hellmuth, David Schaller, Peter F. Stadler:
Clustering Systems of Phylogenetic Networks. CoRR abs/2204.13466 (2022) - [i52]David Schaller, Tom Hartmann, Manuel Lafond, Nicolas Wieseke, Marc Hellmuth, Peter F. Stadler:
Relative Timing Information and Orthology in Evolutionary Scenarios. CoRR abs/2212.02201 (2022) - 2021
- [j210]Wilmer Leal, Guillermo Restrepo, Peter F. Stadler, Jürgen Jost:
Forman-Ricci Curvature for hypergraphs. Adv. Complex Syst. 24(1): 2150003:1-2150003:24 (2021) - [j209]David Schaller, Manuela Geiß, Marc Hellmuth, Peter F. Stadler:
Arc-Completion of 2-Colored Best Match Graphs to Binary-Explainable Best Match Graphs. Algorithms 14(4): 110 (2021) - [j208]Thomas Gatter, Sarah von Löhneysen, Jörg Fallmann, Polina Drozdova, Tom Hartmann, Peter F. Stadler:
LazyB: fast and cheap genome assembly. Algorithms Mol. Biol. 16(1): 8 (2021) - [j207]David Schaller, Manuela Geiß, Marc Hellmuth, Peter F. Stadler:
Heuristic algorithms for best match graph editing. Algorithms Mol. Biol. 16(1): 19 (2021) - [j206]David Schaller, Marc Hellmuth, Peter F. Stadler:
A simpler linear-time algorithm for the common refinement of rooted phylogenetic trees on a common leaf set. Algorithms Mol. Biol. 16(1): 23 (2021) - [j205]Adam Nunn, Christian Otto, Peter F. Stadler, David Langenberger:
Comprehensive benchmarking of software for mapping whole genome bisulfite data: from read alignment to DNA methylation analysis. Briefings Bioinform. 22(5) (2021) - [j204]Adam Nunn, Christian Otto, Peter F. Stadler, David Langenberger:
Erratum to: Comprehensive benchmarking of software for mapping whole genome bisulfite data: from read alignment to DNA methylation analysis. Briefings Bioinform. 22(5) (2021) - [j203]Thomas Gatter, Peter F. Stadler:
Ryūtō: improved multi-sample transcript assembly for differential transcript expression analysis and more. Bioinform. 37(23): 4307-4313 (2021) - [j202]John Anders, Hannes Petruschke, Nico Jehmlich, Sven-Bastiaan Haange, Martin von Bergen, Peter F. Stadler:
A workflow to identify novel proteins based on the direct mapping of peptide-spectrum-matches to genomic locations. BMC Bioinform. 22(1): 277 (2021) - [j201]Halima Saker, Rainer Machné, Jörg Fallmann, Douglas B. Murray, Ahmad M. Shahin, Peter F. Stadler:
Weighted Consensus Segmentations. Comput. 9(2): 17 (2021) - [j200]Marc Hellmuth, Carsten R. Seemann, Peter F. Stadler:
Generalized Fitch Graphs III: Symmetrized Fitch maps and Sets of Symmetric Binary Relations that are explained by Unrooted Edge-labeled Trees. Discret. Math. Theor. Comput. Sci. 23(1) (2021) - [j199]David Schaller, Manuela Geiß, Marc Hellmuth, Peter F. Stadler:
Least resolved trees for two-colored best match graphs. J. Graph Algorithms Appl. 25(1): 397-416 (2021) - [j198]Sarah J. Berkemer, Christian Höner zu Siederdissen, Peter F. Stadler:
Compositional Properties of Alignments. Math. Comput. Sci. 15(4): 609-630 (2021) - [j197]Jonas Coelho Kasmanas, Alexander Bartholomäus, Felipe Borim Corrêa, Tamara L. Tal, Nico Jehmlich, Gunda Herberth, Martin von Bergen, Peter F. Stadler, André Carlos Ponce de Leon Ferreira de Carvalho, Ulisses Nunes da Rocha:
HumanMetagenomeDB: a public repository of curated and standardized metadata for human metagenomes. Nucleic Acids Res. 49(Database-Issue): D743-D750 (2021) - [j196]Fabian Gärtner, Felix Kühnl, Carsten R. Seemann, Christian Höner zu Siederdissen, Peter F. Stadler:
Superbubbles as an empirical characteristic of directed networks. Netw. Sci. 9(1): 49-58 (2021) - [j195]Grover E. C. Guzman, Peter F. Stadler, André Fujita:
Efficient Laplacian spectral density computations for networks with arbitrary degree distributions. Netw. Sci. 9(3): 312-327 (2021) - [j194]David Schaller, Peter F. Stadler, Marc Hellmuth:
Complexity of modification problems for best match graphs. Theor. Comput. Sci. 865: 63-84 (2021) - [c65]David Schaller, Manuela Geiß, Marc Hellmuth, Peter F. Stadler:
Best Match Graphs with Binary Trees. AlCoB 2021: 82-93 - [c64]Mirele C. S. F. Costa, João Victor de Araújo Oliveira, Waldeyr M. C. Silva, Rituparno Sen, Jörg Fallmann, Peter F. Stadler, Maria Emília M. T. Walter:
Machine Learning Studies of Non-coding RNAs based on Artificially Constructed Training Data. BIOINFORMATICS 2021: 176-183 - [c63]Manoj Changat, Ferdoos Hossein Nezhad, Peter F. Stadler:
Cut Vertex Transit Functions of Hypergraphs. CALDAM 2021: 222-233 - [c62]Marc Hellmuth, Mira Michel, Nikolai N. Nøjgaard, David Schaller, Peter F. Stadler:
Combining Orthology and Xenology Data in a Common Phylogenetic Tree. BSB 2021: 53-64 - [e4]Peter F. Stadler, Maria Emília M. T. Walter, Maribel Hernandez-Rosales, Marcelo M. Brigido:
Advances in Bioinformatics and Computational Biology - 14th Brazilian Symposium on Bioinformatics, BSB 2021, Virtual Event, November 22-26, 2021, Proceedings. Lecture Notes in Computer Science 13063, Springer 2021, ISBN 978-3-030-91813-2 [contents] - [i51]David Schaller, Manuela Geiß, Marc Hellmuth, Peter F. Stadler:
Least resolved trees for two-colored best match graphs. CoRR abs/2101.07000 (2021) - [i50]David Schaller, Manuela Geiß, Marc Hellmuth, Peter F. Stadler:
Arc-Completion of 2-Colored Best Match Graphs to Binary-Explainable Best Match Graphs. CoRR abs/2103.06665 (2021) - [i49]Carmen Bruckmann, Peter F. Stadler, Marc Hellmuth:
From Modular Decomposition Trees to Rooted Median Graphs. CoRR abs/2103.06683 (2021) - [i48]David Schaller, Manuela Geiß, Marc Hellmuth, Peter F. Stadler:
Heuristic Algorithms for Best Match Graph Editing. CoRR abs/2103.07280 (2021) - [i47]Marc Hellmuth, David Schaller, Peter F. Stadler:
Compatibility of Partitions, Hierarchies, and Split Systems. CoRR abs/2104.14146 (2021) - [i46]David Schaller, Marc Hellmuth, Peter F. Stadler:
A Linear-Time Algorithm for the Common Refinement of Rooted Phylogenetic Trees on a Common Leaf Set. CoRR abs/2107.00072 (2021) - [i45]Marc Hellmuth, Mira Michel, Nikolai N. Nøjgaard, David Schaller, Peter F. Stadler:
Combining Orthology and Xenology Data in a Common Phylogenetic Tree. CoRR abs/2107.01893 (2021) - [i44]Jakob L. Andersen, Christoph Flamm, Daniel Merkle, Peter F. Stadler:
Defining Autocatalysis in Chemical Reaction Networks. CoRR abs/2107.03086 (2021) - [i43]Carsten R. Seemann, Vincent Moulton, Peter F. Stadler, Marc Hellmuth:
Planar Median Graphs and Cubesquare-Graphs. CoRR abs/2110.09346 (2021) - [i42]David Schaller, Marc Hellmuth, Peter F. Stadler:
Orientation of Fitch Graphs and Detection of Horizontal Gene Transfer in Gene Trees. CoRR abs/2112.00403 (2021) - [i41]David H. Wolpert, Michael H. Price, Stefani A. Crabtree, Timothy A. Kohler, Jürgen Jost, James Evans, Peter F. Stadler, Hajime Shimao, Manfred D. Laubichler:
The Past as a Stochastic Process. CoRR abs/2112.05876 (2021) - 2020
- [j193]Adrian Fritz, Marc Hellmuth, Peter F. Stadler, Nicolas Wieseke:
Cograph editing: Merging modules is equivalent to editing P_4s. Art Discret. Appl. Math. 3(2) (2020) - [j192]Manoj Changat, Prasanth G. Narasimha-Shenoi, Ferdoos Hossein Nezhad, Matjaz Kovse, Shilpa Mohandas, Abisha Ramachandran, Peter F. Stadler:
Transit sets of -point crossover operators. AKCE Int. J. Graphs Comb. 17(1): 519-533 (2020) - [j191]Peter F. Stadler, Manuela Geiß, David Schaller, Alitzel López, Marcos González Laffitte, Dulce I. Valdivia, Marc Hellmuth, Maribel Hernandez-Rosales:
From pairs of most similar sequences to phylogenetic best matches. Algorithms Mol. Biol. 15(1): 5 (2020) - [j190]Angel E. Rodriguez-Fernandez, Bernardo A. Gonzalez-Torres, Ricardo Menchaca-Mendez, Peter F. Stadler:
Clustering Improves the Goemans-Williamson Approximation for the Max-Cut Problem. Comput. 8(3): 75 (2020) - [j189]Marc Hellmuth, Carsten R. Seemann, Peter F. Stadler:
Generalized Fitch graphs II: Sets of binary relations that are explained by edge-labeled trees. Discret. Appl. Math. 283: 495-511 (2020) - [j188]Yangjing Long, Peter F. Stadler:
Exact-2-relation graphs. Discret. Appl. Math. 285: 212-226 (2020) - [j187]Gábor Balogh, Stephan H. Bernhart, Peter F. Stadler, Jana Schor:
A probabilistic version of Sankoff's maximum parsimony algorithm. J. Bioinform. Comput. Biol. 18(1): 2050004:1-2050004:19 (2020) - [j186]Felipe Borim Corrêa, João Pedro Saraiva, Peter F. Stadler, Ulisses Nunes da Rocha:
TerrestrialMetagenomeDB: a public repository of curated and standardized metadata for terrestrial metagenomes. Nucleic Acids Res. 48(Database-Issue): D626-D632 (2020) - [j185]Marc Hellmuth, Manuela Geiß, Peter F. Stadler:
Complexity of modification problems for reciprocal best match graphs. Theor. Comput. Sci. 809: 384-393 (2020) - [j184]Wim Hordijk, Stuart A. Kauffman, Peter F. Stadler:
Average Fitness Differences on NK Landscapes. Theory Biosci. 139(1): 1-7 (2020) - [j183]Rituparno Sen, Jörg Fallmann, Maria Emília M. T. Walter, Peter F. Stadler:
Are spliced ncRNA host genes distinct classes of lncRNAs? Theory Biosci. 139(4): 349-359 (2020) - [c61]Ronny Lorenz, Christoph Flamm, Ivo L. Hofacker, Peter F. Stadler:
Efficient Computation of Base-pairing Probabilities in Multi-strand RNA Folding. BIOINFORMATICS 2020: 23-31 - [c60]Ronny Lorenz, Christoph Flamm, Ivo L. Hofacker, Peter F. Stadler:
Efficient Algorithms for Co-folding of Multiple RNAs. BIOSTEC (Selected Papers) 2020: 193-214 - [c59]Thomas Gatter, Sarah von Löhneysen, Polina Drozdova, Tom Hartmann, Peter F. Stadler:
Economic Genome Assembly from Low Coverage Illumina and Nanopore Data. WABI 2020: 10:1-10:22 - [c58]Manuela M. do Almo, Isabel G. Sousa, Waldeyr Mendes Cordeiro da Silva, Thomas Gatter, Peter F. Stadler, Steve Hoffmann, Andrea Queiroz Maranhão, Marcelo M. Brigido:
Anti-CD3 Stimulated T Cell Transcriptome Reveals Novel ncRNAs and Correlates with a Suppressive Profile. BSB 2020: 180-191 - [c57]Waldeyr Mendes Cordeiro da Silva, Daniela P. de Andrade, Jakob L. Andersen, Maria Emília Telles Walter, Marcelo M. Brigido, Peter F. Stadler, Christoph Flamm:
Computational Simulations for Cyclizations Catalyzed by Plant Monoterpene Synthases. BSB 2020: 247-258 - [i40]Fabian Gärtner, Felix Kühnl, Carsten R. Seemann, Christian Höner zu Siederdissen, Peter F. Stadler:
Superbubbles as an Empirical Characteristic of Directed Networks. CoRR abs/2001.03409 (2020) - [i39]Marc Hellmuth, Carsten R. Seemann, Peter F. Stadler:
Generalized Fitch Graphs III: Symmetrized Fitch maps and Sets of Symmetric Binary Relations that are explained by Unrooted Edge-labeled Trees. CoRR abs/2001.05921 (2020) - [i38]Dulce I. Valdivia, Manuela Geiß, Maribel Hernández-Rosales, Peter F. Stadler, Marc Hellmuth:
Hierarchical and Modularly-Minimal Vertex Colorings. CoRR abs/2004.06340 (2020) - [i37]Tom Hartmann, Max Bannach, Martin Middendorf, Peter F. Stadler, Nicolas Wieseke, Marc Hellmuth:
Complete Edge-Colored Permutation Graphs. CoRR abs/2004.07118 (2020) - [i36]David Schaller, Manuela Geiß, Peter F. Stadler, Marc Hellmuth:
Complete Characterization of Incorrect Orthology Assignments in Best Match Graphs. CoRR abs/2006.02249 (2020) - [i35]David Schaller, Peter F. Stadler, Marc Hellmuth:
Complexity of Modification Problems for Best Match Graphs. CoRR abs/2006.16909 (2020) - [i34]David Schaller, Manuela Geiß, Marc Hellmuth, Peter F. Stadler:
Best Match Graphs with Binary Trees. CoRR abs/2011.00511 (2020) - [i33]David Schaller, Manuel Lafond, Peter F. Stadler, Nicolas Wieseke, Marc Hellmuth:
Indirect Identification of Horizontal Gene Transfer. CoRR abs/2012.08897 (2020)
2010 – 2019
- 2019
- [j182]Manoj Changat, Prasanth G. Narasimha-Shenoi, Peter F. Stadler:
Axiomatic characterization of transit functions of weak hierarchies. Art Discret. Appl. Math. 2(1): #P1.01 (2019) - [j181]Fabian Gärtner, Peter F. Stadler:
Direct Superbubble Detection. Algorithms 12(4): 81 (2019) - [j180]Daniel Wiegreffe, Daniel Alexander, Peter F. Stadler, Dirk Zeckzer:
RNApuzzler: efficient outerplanar drawing of RNA-secondary structures. Bioinform. 35(8): 1342-1349 (2019) - [j179]Ali M. Yazbeck, Peter F. Stadler, Kifah Tout, Jörg Fallmann:
Automatic curation of large comparative animal MicroRNA datasets. Bioinform. 35(22): 4553-4559 (2019) - [j178]Maria Beatriz Walter Costa, Christian Höner zu Siederdissen, Marko Dunjic, Peter F. Stadler, Katja Nowick:
SSS-test: a novel test for detecting positive selection on RNA secondary structure. BMC Bioinform. 20(1): 151:1-151:19 (2019) - [j177]Thomas Gatter, Peter F. Stadler:
Ryūtō: network-flow based transcriptome reconstruction. BMC Bioinform. 20(1): 190:1-190:14 (2019) - [j176]Joachim Ludwig, Christian Höner zu Siederdissen, Zishu Liu, Peter F. Stadler, Susann Müller:
flowEMMi: an automated model-based clustering tool for microbial cytometric data. BMC Bioinform. 20(1): 643 (2019) - [j175]Erhard Rahm, Wolfgang E. Nagel, Eric Peukert, René Jäkel, Fabian Gärtner, Peter F. Stadler, Daniel Wiegreffe, Dirk Zeckzer, Wolfgang Lehner:
Big Data Competence Center ScaDS Dresden/Leipzig: Overview and selected research activities. Datenbank-Spektrum 19(1): 5-16 (2019) - [j174]Jörg Fallmann, Pavankumar Videm, Andrea Bagnacani, Bérénice Batut, Maria A. Doyle, Tomas Klingström, Florian Eggenhofer, Peter F. Stadler, Rolf Backofen, Björn A. Grüning:
The RNA workbench 2.0: next generation RNA data analysis. Nucleic Acids Res. 47(Webserver-Issue): W511-W515 (2019) - [j173]Jakob L. Andersen, Christoph Flamm, Daniel Merkle, Peter F. Stadler:
Chemical Transformation Motifs - Modelling Pathways as Integer Hyperflows. IEEE ACM Trans. Comput. Biol. Bioinform. 16(2): 510-523 (2019) - [c56]Falco Kirchner, Nancy Retzlaff, Peter F. Stadler:
A General Framework for Exact Partially Local Alignments. BIOINFORMATICS 2019: 194-200 - [c55]Maria Waldl, Sebastian Will, Michael T. Wolfinger, Ivo L. Hofacker, Peter F. Stadler:
Bi-alignments as Models of Incongruent Evolution of RNA Sequence and Secondary Structure. CIBB 2019: 159-170 - [i32]Manuela Geiß, Marcos González, Alitzel López, Dulce I. Valdivia, Marc Hellmuth, Maribel Hernández-Rosales, Peter F. Stadler:
Best Match Graphs and Reconciliation of Gene Trees with Species Trees. CoRR abs/1904.12021 (2019) - [i31]Dulce I. Valdivia, Manuela Geiß, Marc Hellmuth, Maribel Hernández-Rosales, Peter F. Stadler:
Hierarchical Colorings of Cographs. CoRR abs/1906.10031 (2019) - [i30]Marc Hellmuth, Manuela Geiß, Peter F. Stadler:
Complexity of Modification Problems for Reciprocal Best Match Graphs. CoRR abs/1907.08865 (2019) - [i29]Marc Hellmuth, Carsten R. Seemann, Peter F. Stadler:
Generalized Fitch Relations II: Sets of Binary Relations that are explained by Edge-labeled Trees. CoRR abs/1911.07469 (2019) - 2018
- [j172]Marc Hellmuth, Yangjing Long, Manuela Geiß, Peter F. Stadler:
A short note on undirected Fitch graphs. Art Discret. Appl. Math. 1(1): #P1.08 (2018) - [j171]Nikolai Nøjgaard, Manuela Geiß, Daniel Merkle, Peter F. Stadler, Nicolas Wieseke, Marc Hellmuth:
Time-consistent reconciliation maps and forbidden time travel. Algorithms Mol. Biol. 13(1): 2:1-2:17 (2018) - [j170]Alexander Donath, Peter F. Stadler:
Split-inducing indels in phylogenomic analysis. Algorithms Mol. Biol. 13(1): 12:1-12:12 (2018) - [j169]Fabian Gärtner, Christian Höner zu Siederdissen, Lydia Müller, Peter F. Stadler:
Coordinate systems for supergenomes. Algorithms Mol. Biol. 13(1): 15:1-15:19 (2018) - [j168]Fabian Gärtner, Lydia Müller, Peter F. Stadler:
Superbubbles revisited. Algorithms Mol. Biol. 13(1): 16:1-16:17 (2018) - [j167]Manoj Changat, Ferdoos Hossein Nezhad, Peter F. Stadler:
Axiomatic characterization of transit functions of hierarchies. Ars Math. Contemp. 14(1): 117-128 (2018) - [j166]Alexandre Rossi Paschoal, Irma Lozada-Chávez, Douglas Silva Domingues, Peter F. Stadler:
ceRNAs in plants: computational approaches and associated challenges for target mimic research. Briefings Bioinform. 19(6): 1273-1289 (2018) - [j165]Anne Hoffmann, Jörg Fallmann, Elisa Vilardo, Mario Mörl, Peter F. Stadler, Fabian Amman:
Accurate mapping of tRNA reads. Bioinform. 34(7): 1116-1124 (2018) - [j164]Anne Hoffmann, Jörg Fallmann, Elisa Vilardo, Mario Mörl, Peter F. Stadler, Fabian Amman:
Accurate mapping of tRNA reads. Bioinform. 34(13): 2339 (2018) - [j163]Rolf Fagerberg, Christoph Flamm, Rojin Kianian, Daniel Merkle, Peter F. Stadler:
Finding the K best synthesis plans. J. Cheminformatics 10(1): 19:1-19:21 (2018) - [j162]Nancy Retzlaff, Peter F. Stadler:
Partially Local Multi-way Alignments. Math. Comput. Sci. 12(2): 207-234 (2018) - [j161]Haleh Ebadi, Michael Perry, Keith Short, Konstantin Klemm, Claude Desplan, Peter F. Stadler, Anita Mehta:
Patterning the insect eye: From stochastic to deterministic mechanisms. PLoS Comput. Biol. 14(11) (2018) - [j160]Nancy Retzlaff, Peter F. Stadler:
Phylogenetics beyond biology. Theory Biosci. 137(2): 133-143 (2018) - [i28]Sarah J. Berkemer, Christian Höner zu Siederdissen, Peter F. Stadler:
Alignments as Compositional Structures. CoRR abs/1810.07800 (2018) - [i27]Wilmer Leal, Guillermo Restrepo, Peter F. Stadler, Jürgen Jost:
Forman-Ricci Curvature for Hypergraphs. CoRR abs/1811.07825 (2018) - 2017
- [j159]Sarah Berkemer, Christian Höner zu Siederdissen, Peter F. Stadler:
Algebraic Dynamic Programming on Trees. Algorithms 10(4): 135 (2017) - [j158]Marwa Al Arab, Matthias Bernt, Christian Höner zu Siederdissen, Kifah Tout, Peter F. Stadler:
Partially local three-way alignments and the sequence signatures of mitochondrial genome rearrangements. Algorithms Mol. Biol. 12(1): 22:1-22:11 (2017) - [j157]Felix Kühnl, Peter F. Stadler, Sebastian Will:
Tractable RNA-ligand interaction kinetics. BMC Bioinform. 18(S-12): 47-55 (2017) - [j156]Ali M. Yazbeck, Kifah R. Tout, Peter F. Stadler, Jana Hertel:
Towards a Consistent, Quantitative Evaluation of MicroRNA Evolution. J. Integr. Bioinform. 14(1) (2017) - [j155]Björn A. Grüning, Jörg Fallmann, Dilmurat Yusuf, Sebastian Will, Anika Erxleben, Florian Eggenhofer, Torsten Houwaart, Bérénice Batut, Pavankumar Videm, Andrea Bagnacani, Markus Wolfien, Steffen Lott, Youri Hoogstrate, Wolfgang R. Hess, Olaf Wolkenhauer, Steve Hoffmann, Altuna Akalin, Uwe Ohler, Peter F. Stadler, Rolf Backofen:
The RNA workbench: best practices for RNA and high-throughput sequencing bioinformatics in Galaxy. Nucleic Acids Res. 45(Webserver-Issue): W560-W566 (2017) - [j154]Sven Findeiß, Maja Etzel, Sebastian Will, Mario Mörl, Peter F. Stadler:
Design of Artificial Riboswitches as Biosensors. Sensors 17(9): 1990 (2017) - [c54]Jakob Lykke Andersen, Christoph Flamm, Daniel Merkle, Peter F. Stadler:
Chemical Graph Transformation with Stereo-Information. ICGT 2017: 54-69 - [c53]Nikolai Nøjgaard, Manuela Geiß, Daniel Merkle, Peter F. Stadler, Nicolas Wieseke, Marc Hellmuth:
Forbidden Time Travel: Characterization of Time-Consistent Tree Reconciliation Maps. WABI 2017: 17:1-17:12 - [i26]Jakob L. Andersen, Christoph Flamm, Daniel Merkle, Peter F. Stadler:
An Intermediate Level of Abstraction for Computational Systems Chemistry. CoRR abs/1701.09097 (2017) - [i25]Marc Hellmuth, Adrian Fritz, Nicolas Wieseke, Peter F. Stadler:
Merging Modules is equivalent to Editing P4's. CoRR abs/1702.07499 (2017) - [i24]Nikolai Nøjgaard, Manuela Geiß, Peter F. Stadler, Daniel Merkle, Nicolas Wieseke, Marc Hellmuth:
Forbidden Time Travel: Characterization of Time-Consistent Tree Reconciliation Maps. CoRR abs/1705.02179 (2017) - [i23]