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ORCIDRafael Najmanovich
Person information
- affiliation: Université de Montréal, QC, Canada
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Journal Articles
- 2023
[j22]Olivier Mailhot
, François Major, Rafael Najmanovich:
The DynaSig-ML Python package: automated learning of biomolecular dynamics-function relationships. Bioinform. 39(4) (2023)- [j21]Natália Teruel, Vinicius Magalhães Borges, Rafael Najmanovich:
Surfaces: a software to quantify and visualize interactions within and between proteins and ligands. Bioinform. 39(10) (2023) - 2022
- [j20]Matthew Crown, Natália Teruel, Rafael Najmanovich, Matthew Bashton:
SPEAR: Systematic ProtEin AnnotatoR. Bioinform. 38(15): 3827-3829 (2022) - [j19]Olivier Mailhot, Vincent Frappier, François Major, Rafael J. Najmanovich:
Sequence-sensitive elastic network captures dynamical features necessary for miR-125a maturation. PLoS Comput. Biol. 18(12): 1010777 (2022) - 2021
- [j18]Olivier Mailhot, Rafael Najmanovich:
The NRGTEN Python package: an extensible toolkit for coarse-grained normal mode analysis of proteins, nucleic acids, small molecules and their complexes. Bioinform. 37(19): 3369-3371 (2021) - [j17]Natália Teruel, Olivier Mailhot, Rafael J. Najmanovich:
Modelling conformational state dynamics and its role on infection for SARS-CoV-2 Spike protein variants. PLoS Comput. Biol. 17(8) (2021) - 2017
- [j16]Thierry Chénard, Frédéric Guénard, Marie-Claude Vohl, André Carpentier, André Tchernof, Rafael J. Najmanovich:
Remodeling adipose tissue through in silico modulation of fat storage for the prevention of type 2 diabetes. BMC Syst. Biol. 11(1): 60:1-60:15 (2017) - 2016
- [j15]Matthieu Chartier, Etienne Adriansen, Rafael Najmanovich:
IsoMIF Finder: online detection of binding site molecular interaction field similarities. Bioinform. 32(4): 621-623 (2016) - 2015
- [j14]Ilan Samish, Philip E. Bourne, Rafael J. Najmanovich:
Editor's Choice: Achievements and challenges in structural bioinformatics and computational biophysics. Bioinform. 31(1): 146-150 (2015) - [j13]Francis Gaudreault, Louis-Philippe Morency, Rafael J. Najmanovich:
NRGsuite: a PyMOL plugin to perform docking simulations in real time using FlexAID. Bioinform. 31(23): 3856-3858 (2015) - [j12]Francis Gaudreault, Rafael J. Najmanovich:
FlexAID: Revisiting Docking on Non-Native-Complex Structures. J. Chem. Inf. Model. 55(7): 1323-1336 (2015) - [j11]Matthieu Chartier, Rafael Najmanovich:
Detection of Binding Site Molecular Interaction Field Similarities. J. Chem. Inf. Model. 55(8): 1600-1615 (2015) - [j10]Vincent Frappier, Matthieu Chartier, Rafael J. Najmanovich:
ENCoM server: exploring protein conformational space and the effect of mutations on protein function and stability. Nucleic Acids Res. 43(Webserver-Issue): W395-W400 (2015) - 2014
- [j9]Mathieu Larocque, Thierry Chénard, Rafael Najmanovich:
A curated C. difficile strain 630 metabolic network: prediction of essential targets and inhibitors. BMC Syst. Biol. 8: 117 (2014) - [j8]Vincent Frappier, Rafael J. Najmanovich:
A Coarse-Grained Elastic Network Atom Contact Model and Its Use in the Simulation of Protein Dynamics and the Prediction of the Effect of Mutations. PLoS Comput. Biol. 10(4) (2014) - 2012
- [j7]Matthieu Chartier, Francis Gaudreault, Rafael Najmanovich:
Large-scale analysis of conserved rare codon clusters suggests an involvement in co-translational molecular recognition events. Bioinform. 28(11): 1438-1445 (2012) - [j6]Francis Gaudreault, Matthieu Chartier, Rafael Najmanovich:
Side-chain rotamer changes upon ligand binding: common, crucial, correlate with entropy and rearrange hydrogen bonding. Bioinform. 28(18): 423-430 (2012) - 2011
- [j5]Valérie Campagna-Slater, Man Wai Mok, Kong T. Nguyen, Miklos Feher, Rafael Najmanovich, Matthieu Schapira:
Structural Chemistry of the Histone Methyltransferases Cofactor Binding Site. J. Chem. Inf. Model. 51(3): 612-623 (2011) - 2007
- [j4]Rafael Najmanovich, Abdellah Allali-Hassani, Richard J. Morris, Ludmila Dombrovsky, Patricia W. Pan, Masoud Vedadi, Alexander N. Plotnikov, Aled M. Edwards, Cheryl H. Arrowsmith, Janet M. Thornton:
Analysis of binding site similarity, small-molecule similarity and experimental binding profiles in the human cytosolic sulfotransferase family. Bioinform. 23(2): 104-109 (2007) - 2005
- [j3]Richard J. Morris, Rafael Najmanovich, Abdullah Kahraman, Janet M. Thornton:
Real spherical harmonic expansion coefficients as 3D shape descriptors for protein binding pocket and ligand comparisons. Bioinform. 21(10): 2347-2355 (2005) - 2004
- [j2]Eran Eyal, Rafael Najmanovich, Brendan J. McConkey, Marvin Edelman, Vladimir Sobolev:
Importance of solvent accessibility and contact surfaces in modeling side-chain conformations in proteins. J. Comput. Chem. 25(5): 712-724 (2004) - 2001
- [j1]Eran Eyal, Rafael Najmanovich, Vladimir Sobolev, Marvin Edelman:
MutaProt: a web interface for structural analysis of point mutations. Bioinform. 17(4): 381-382 (2001)
Conference and Workshop Papers
- 2016
- [c2]Laouen Belloli, Gabriel A. Wainer, Rafael Najmanovich:
Parsing and model generation for biological processes. SpringSim (TMS-DEVS) 2016: 21 - 2008
- [c1]Rafael Najmanovich, Natalja Kurbatova, Janet M. Thornton:
Detection of 3D atomic similarities and their use in the discrimination of small molecule protein-binding sites. ECCB 2008: 105-111
Coauthor Index
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