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- Olga Vitek
Northeastern University, Boston, MA, USA
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Publication search results
found 37 matches
- 2023
- Dan Guo, Melanie Christine Föll, Kylie A. Bemis, Olga Vitek:
A noise-robust deep clustering of biomolecular ions improves interpretability of mass spectrometric images. Bioinform. 39(2) (2023) - Sara Mohammad Taheri, Vartika Tewari, Rohan Kapre, Ehsan Rahiminasab, Karen Sachs, Charles Tapley Hoyt, Jeremy Zucker, Olga Vitek:
Optimal adjustment sets for causal query estimation in partially observed biomolecular networks. Bioinform. 39(Supplement-1): 494-503 (2023) - 2022
- Laura South
, David Saffo
, Olga Vitek
, Cody Dunne
, Michelle A. Borkin
:
Effective Use of Likert Scales in Visualization Evaluations: A Systematic Review. Comput. Graph. Forum 41(3): 43-55 (2022) - 2021
- Jeremy Zucker
, Kaushal Paneri, Sara Mohammad Taheri
, Somya Bhargava
, Pallavi Kolambkar, Craig Bakker
, Jeremy Teuton
, Charles Tapley Hoyt
, Kristie L. Oxford
, Robert Osazuwa Ness, Olga Vitek:
Leveraging Structured Biological Knowledge for Counterfactual Inference: A Case Study of Viral Pathogenesis. IEEE Trans. Big Data 7(1): 25-37 (2021) - Jeremy Zucker, Kaushal Paneri, Sara Mohammad Taheri, Somya Bhargava, Pallavi Kolambkar, Craig Bakker, Jeremy Teuton, Charles Tapley Hoyt, Kristie L. Oxford, Robert Osazuwa Ness, Olga Vitek:
Leveraging Structured Biological Knowledge for Counterfactual Inference: a Case Study of Viral Pathogenesis. CoRR abs/2101.05136 (2021) - Sara Mohammad Taheri, Robert Osazuwa Ness, Jeremy Zucker, Olga Vitek:
Do-calculus enables causal reasoning with latent variable models. CoRR abs/2102.06626 (2021) - 2020
- Dan Guo, Melanie Christine Föll
, Veronika Volkmann, Kathrin Enderle-Ammour, Peter Bronsert, Oliver Schilling, Olga Vitek:
Deep multiple instance learning classifies subtissue locations in mass spectrometry images from tissue-level annotations. Bioinform. 36(Supplement-1): i300-i308 (2020) - Sara Mohammad Taheri, Omkar Terse, Eralp Dogu, Magy Seif El-Nasr, Olga Vitek:
Investigating usability of MSstatsQC software. CoRR abs/2002.00511 (2020) - 2019
- Dan Guo, Kylie A. Bemis, Catherine Rawlins, Jeffrey N. Agar
, Olga Vitek:
Unsupervised segmentation of mass spectrometric ion images characterizes morphology of tissues. Bioinform. 35(14): i208-i217 (2019) - Emery D. Berger
, Celeste Hollenbeck, Petr Maj, Olga Vitek, Jan Vitek
:
On the Impact of Programming Languages on Code Quality: A Reproduction Study. ACM Trans. Program. Lang. Syst. 41(4): 21:1-21:24 (2019) - Michail Schwab, Sicheng Hao, Olga Vitek, James Tompkin, Jeff Huang, Michelle A. Borkin
:
Evaluating Pan and Zoom Timelines and Sliders. CHI 2019: 556 - Robert Osazuwa Ness, Kaushal Paneri, Olga Vitek:
Integrating Markov processes with structural causal modeling enables counterfactual inference in complex systems. NeurIPS 2019: 14211-14221 - Emery D. Berger, Celeste Hollenbeck, Petr Maj, Olga Vitek, Jan Vitek:
On the Impact of Programming Languages on Code Quality. CoRR abs/1901.10220 (2019) - Robert Osazuwa Ness, Kaushal Paneri, Olga Vitek:
Integrating Markov processes with structural causal modeling enables counterfactual inference in complex systems. CoRR abs/1911.02175 (2019) - Emery D. Berger, Petr Maj, Olga Vitek, Jan Vitek:
FSE/CACM Rebuttal2: Correcting A Large-Scale Study of Programming Languages and Code Quality in GitHub. CoRR abs/1911.11894 (2019) - 2018
- Robert Osazuwa Ness, Karen Sachs, Parag Mallick, Olga Vitek:
A Bayesian Active Learning Experimental Design for Inferring Signaling Networks. J. Comput. Biol. 25(7): 709-725 (2018) - Cyril Galitzine, Pierre M. Jean Beltran, Ileana M. Cristea, Olga Vitek:
Statistical Inference of Peroxisome Dynamics. RECOMB 2018: 54-74 - 2017
- Kylie A. Bemis, Olga Vitek:
matter: an R package for rapid prototyping with larger-than-memory datasets on disk. Bioinform. 33(19): 3142-3144 (2017) - Robert Osazuwa Ness, Karen Sachs, Parag Mallick
, Olga Vitek:
A Bayesian Active Learning Experimental Design for Inferring Signaling Networks. RECOMB 2017: 134-156 - 2015
- Kyle D. Bemis, April Harry, Livia S. Eberlin, Christina Ferreira
, Stephanie M. van de Ven
, Parag Mallick
, Mark L. Stolowitz, Olga Vitek:
Cardinal: an R package for statistical analysis of mass spectrometry-based imaging experiments. Bioinform. 31(14): 2418-2420 (2015) - Andrew Palmer, Ekaterina Ovchinnikova, Mikael Thuné, Régis Lavigne, Blandine Guével
, Andrey Dyatlov, Olga Vitek, Charles Pineau
, Mats Borén, Theodore Alexandrov:
Using collective expert judgements to evaluate quality measures of mass spectrometry images. Bioinform. 31(12): 375-384 (2015) - Lin-Yang Cheng, Yansheng Liu, Ching-Yun Chang, Hannes L. Röst
, Ruedi Aebersold, Olga Vitek:
Statistical elimination of spectral features with large between-run variation enhances quantitative protein-level conclusions in experiments with data-independent spectral acquisition. BMC Bioinform. 16(S-2): A4 (2015) - Rudolf Aebersold, Oliver Kohlbacher, Olga Vitek:
Computational Mass Spectrometry (Dagstuhl Seminar 15351). Dagstuhl Reports 5(8): 9-33 (2015) - 2014
- Daniel Broudy, Trevor Killeen, Meena Choi
, Nicholas Shulman, Deepak R. Mani
, Susan E. Abbatiello, Deepak Mani, Rushdy Ahmad
, Alexandria K. Sahu, Birgit Schilling, Kaipo Tamura, Yuval Boss, Vagisha Sharma, Bradford W. Gibson, Steven A. Carr, Olga Vitek, Michael J. MacCoss, Brendan MacLean:
A framework for installable external tools in Skyline. Bioinform. 30(17): 2521-2523 (2014) - Meena Choi
, Ching-Yun Chang, Timothy Clough, Daniel Broudy, Trevor Killeen, Brendan MacLean, Olga Vitek:
MSstats: an R package for statistical analysis of quantitative mass spectrometry-based proteomic experiments. Bioinform. 30(17): 2524-2526 (2014) - 2013
- Danni Yu, Wolfgang Huber
, Olga Vitek:
Shrinkage estimation of dispersion in Negative Binomial models for RNA-seq experiments with small sample size. Bioinform. 29(10): 1275-1282 (2013) - Olga Vitek:
Leading a Statistical Bioinformatics Lab: It's All About Finding Balance. PLoS Comput. Biol. 9(11) (2013) - Ruedi Aebersold, Oliver Kohlbacher, Olga Vitek:
Computational Mass Spectrometry (Dagstuhl Seminar 13491). Dagstuhl Reports 3(12): 1-16 (2013) - 2012
- Kyle D. Bemis, Livia Eberlin, Christina Ferreira, R. Cooks, Olga Vitek:
Spatial segmentation and feature selection for desi imaging mass spectrometry data with spatially-aware sparse clustering. BMC Bioinform. 13(S-18): A8 (2012) - Timothy Clough, Safia Thaminy, Susanne Ragg, Ruedi Aebersold, Olga Vitek:
Statistical protein quantification and significance analysis in label-free LC-MS experiments with complex designs. BMC Bioinform. 13(S-16): S6 (2012)
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