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ORCID22nd RECOMB-CG 2025: Seoul, South Korea
- Giltae Song
:
Comparative Genomics - 22nd RECOMB International Workshop, RECOMB-CG 2025, Seoul, South Korea, April 24-25, 2025, Proceedings. Lecture Notes in Computer Science 15666, Springer 2026, ISBN 978-3-031-94927-2
Cancer Genomics
- Ofek Shami-Schnitzer, Tamir Tuller:
Novel Driver Mutations in GCB Lymphoma Patients that Affect Transcription Factors Binding. 3-8 - Yushu Liu, Luay Nakhleh:
Inferring Phylogenetic Trees of Cancer Evolution from Longitudinal Single-Cell Copy Number Profiles. 9-23
Homology and Reconciliation
- Songdi Hu, Vladimir Reinharz, Olivier Tremblay-Savard:
Tree Decomposition for Reconstructing Ancestral RNA Sequences of Multiple Families. 27-50 - Reza Kalhor, Manuel Lafond, Céline Scornavacca:
Whole-Genome Duplication Detection with Phylogenomics Reconciliation: A Scalable Approach. 51-68 - Alitzel López Sánchez, Guillaume E. Scholz, Peter F. Stadler, Manuel Lafond:
A Sankoff-Rousseau-Like Algorithm for Minimizing Lateral Gene Transfers and Losses on Single Origin Characters. 69-86 - Yongze Yin, Bryce Kille, Huw A. Ogilvie, Todd J. Treangen, Luay Nakhleh:
tMHG-Finder: Tree-Guided Maximal Homologous Group Finder for Bacterial Genomes. 87-104
Phylogenetics
- Leo van Iersel, Mark Jones, Jannik Schestag, Céline Scornavacca, Mathias Weller:
Phylogenetic Network Diversity Parameterized by Reticulation Number and Beyond. 107-130 - Tanjeem Azwad Zaman, Rabib Jahin Ibn Momin, Md. Shamsuzzoha Bayzid:
On the Robustness to Gene Tree Rooting (or Lack Thereof) of Triplet-Based Species Tree Estimation Methods. 131-136 - Hao Yu, Louxin Zhang:
Exact Counts of Binary Phylogenetic Networks with Two and Three Reticulation Events (Extended Abstract). 137-140 - Xintong Zhou, David Sankoff:
Ancestral Pangenomes and Their Phylogenetic Reconstruction. 141-149 - Navid Bin Hasan, Sohaib, Md. Shamsuzzoha Bayzid:
QT-WEAVER: Correcting Quartet Distribution Improves Phylogenomic Analyses Despite Gene Tree Estimation Error. 150-156 - Kaari Landry, Olivier Tremblay-Savard:
Fast Calculation of Cherry Distance on Level-1 Orchard Networks: Optimization, Heuristic and Implementation. 157-177
Sequence Analysis
- Meijun Gao, Kevin J. Liu:
Detecting and Mapping Local Model Violations During Biomolecular Sequence Analysis: a REsampling and Visual EvALuation Approach. 181-196 - Martin C. Frith:
A Simple Way to Find Related Sequences with Position-Specific Probabilities. 197-201 - Sarwan Ali, Taslim Murad, Prakash Chourasia, Haris Mansoor, Imdad Ullah Khan, Pin-Yu Chen, Murray Patterson:
Position Specific Scoring Is All You Need? Revisiting Protein Sequence Classification Tasks. 202-215
Epidemiology
- Siyu Chen, David Sankoff:
Residual Immunity and Seasonality of an Epidemic. 219-230 - Eric CH Chen, Tara Newman, John R. Tyson, Anthea Lam, Michael Chan, Agatha Jassem, Natalie Prystajecky, Shannon Russell, James Zlosnik:
Adapting the Cov2clusters Tool for Clustering MPOXV Whole Genome Sequences. 231-243
Genome Evolution
- Muyao Huang, Martin C. Frith:
Probability-Based Sequence Comparison Finds the Oldest Ever Nuclear Mitochondrial DNA Segments in Mammalian Genomes. 247-250 - Triveni Shelke, Vanika Gupta, Ishaan Gupta:
Unraveling Insect Immunity: A Cross-Order Comparative Genomic Analysis of Key Immune Proteins. 251-267 - Yue Zhang:
Analyzing Sequence Similarity Distributions in Salmonidae: A Branching Process Approach. 268-283 - Katia Aviña-Padilla, Octavio Zambada-Moreno, Manuel A. Barrios-Izás, Michelle Bustamante-Castillo, Maribel Hernández-Rosales:
Evolutionary Reconstruction of Hormone-bHLH Regulatory Networks in Solanaceae: Phylogenomics Insights from PSTVd-Tomato Interactions. 284-291
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