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ORCIDIEEE/ACM Transactions on Computational Biology and Bioinformatics, Volume 2
Volume 2, Number 1, January 2005
- Junhyong Kim, Inge Jonassen:
Guest Editorial: WABI Special Section Part II. 1-2 - Julien Allali, Marie-France Sagot:
A New Distance for High Level RNA Secondary Structure Comparison. 3-14 - Denis Bertrand, Olivier Gascuel:
Topological Rearrangements and Local Search Method for Tandem Duplication Trees. 15-28 - Daniel G. Brown:
Optimizing Multiple Seeds for Protein Homology Search. 29-38 - Dan Gusfield:
Editorial-State of the Transaction. 39 - Nadia Pisanti
, Maxime Crochemore, Roberto Grossi, Marie-France Sagot:
Bases of Motifs for Generating Repeated Patterns with Wild Cards. 40-50 - Gregory Kucherov, Laurent Noé, Mikhail A. Roytberg:
Multiseed Lossless Filtration. 51-61 - Ying Liu, Shamkant B. Navathe, Jorge Civera, Venu Dasigi, Ashwin Ram, Brian J. Ciliax, Ray Dingledine:
Text Mining Biomedical Literature for Discovering Gene-to-Gene Relationships: A Comparative Study of Algorithms. 62-76
Volume 2, Number 2, April 2005
- Charles X. Ling, William Stafford Noble, Qiang Yang:
Guest Editors' Introduction to the Special Issue: Machine Learning for Bioinformatics - Part 1. 81-82 - Wai-Ho Au, Keith C. C. Chan, Andrew K. C. Wong, Yang Wang:
Attribute Clustering for Grouping, Selection, and Classification of Gene Expression Data. 83-101 - Pravesh Biyani, Xiaolin Wu, Abhijit Sinha:
Joint Classification and Pairing of Human Chromosomes. 102-109 - Cesare Furlanello, Maria Serafini, Stefano Merler, Giuseppe Jurman:
Semisupervised Learning for Molecular Profiling. 110-118 - Hiroshi Mamitsuka:
Essential Latent Knowledge for Protein-Protein Interactions: Analysis by an Unsupervised Learning Approach. 119-130 - Jagath C. Rajapakse, Loi Sy Ho:
Markov Encoding for Detecting Signals in Genomic Sequences. 131-142 - Simon Rogers, Mark A. Girolami, Colin Campbell, Rainer Breitling:
The Latent Process Decomposition of cDNA Microarray Data Sets. 143-156 - Jinbo Xu:
Fold Recognition by Predicted Alignment Accuracy. 157-165 - Li Shen, Eng Chong Tan:
Dimension Reduction-Based Penalized Logistic Regression for Cancer Classification Using Microarray Data. 166-175
Volume 2, Number 3, July 2005
- Charles X. Ling, William Stafford Noble, Qiang Yang:
Guest Editor's Introduction to the Special Issue: Machine Learning for Bioinformatics-Part 2. 177-178 - Alexander Schliep, Ivan G. Costa, Christine Steinhoff, Alexander Schönhuth:
Analyzing Gene Expression Time-Courses. 179-193 - Anshul Kundaje, Manuel Middendorf, Feng Gao, Chris Wiggins, Christina S. Leslie:
Combining Sequence and Time Series Expression Data to Learn Transcriptional Modules. 194-202 - Samuel Kaski, Janne Nikkilä, Janne Sinkkonen, Leo Lahti, Juha E. A. Knuuttila, Christophe Roos:
Associative Clustering for Exploring Dependencies between Functional Genomics Data Sets. 203-216 - Jingfen Zhang, Wen Gao, Jinjin Cai, Simin He, Rong Zeng, Runsheng Chen:
Predicting Molecular Formulas of Fragment Ions with Isotope Patterns in Tandem Mass Spectra. 217-230 - Ed Keedwell, Ajit Narayanan:
Discovering Gene Networks with a Neural-Genetic Hybrid. 231-242 - John Hawkins, Mikael Bodén:
The Applicability of Recurrent Neural Networks for Biological Sequence Analysis. 243-253 - Mikael Gustafsson, Michael Hornquist, Anna Lombardi:
Constructing and Analyzing a Large-Scale Gene-to-Gene Regulatory Network-Lasso-Constrained Inference and Biological Validation. 254-261 - Cigdem Demir, S. Humayun Gultekin, Bülent Yener:
Learning the Topological Properties of Brain Tumors. 262-270
Volume 2, Number 4, October 2005
- Trevor M. Cickovski, Chengbang Huang, Rajiv Chaturvedi, Tilmann Glimm, H. George E. Hentschel, Mark S. Alber, James A. Glazier, Stuart A. Newman, Jesús A. Izaguirre:
A Framework for Three-Dimensional Simulation of Morphogenesis. 273-288 - Riccardo Boscolo, Chiara Sabatti, James C. Liao, Vwani P. Roychowdhury:
A Generalized Framework for Network Component Analysis. 289-301 - Xin Chen, Jie Zheng, Zheng Fu, Peng Nan, Yang Zhong, Stefano Lonardi, Tao Jiang:
Assignment of Orthologous Genes via Genome Rearrangement. 302-315 - Heather L. Turner, Trevor C. Bailey, Wojtek J. Krzanowski, Cheryl A. Hemingway:
Biclustering Models for Structured Microarray Data. 316-329 - José L. Sevilla Campo, Victor Segura, Adam Podhorski, Elizabeth Guruceaga, José M. Mato, Luis A. Martínez-Cruz, Fernando J. Corrales, Angel Rubio:
Correlation between Gene Expression and GO Semantic Similarity. 330-338 - Sungroh Yoon, Christine Nardini, Luca Benini, Giovanni De Micheli:
Discovering Coherent Biclusters from Gene Expression Data Using Zero-Suppressed Binary Decision Diagrams. 339-354 - Vincent Shin-Mu Tseng, Ching-Pin Kao:
Efficiently Mining Gene Expression Data via a Novel Parameterless Clustering Method. 355-365 - Shaojie Zhang, Brian Haas, Eleazar Eskin, Vineet Bafna:
Searching Genomes for Noncoding RNA Using FastR. 366-379
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