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Journal Articles
- 2015
[j11]Chunyu Zhao, Ahmet Sacan:
UniAlign: protein structure alignment meets evolution. Bioinform. 31(19): 3139-3146 (2015)- [j10]Francis Bell, Ahmet Sacan:
Content-based search of gene expression databases using binary fingerprints of differential expression profiles. Netw. Model. Anal. Health Informatics Bioinform. 4(1): 4 (2015) - 2013
- [j9]Rehman Qureshi, Ahmet Sacan:
Weighted set enrichment of gene expression data. BMC Syst. Biol. 7(S-4): S10 (2013) - [j8]Serdar Arslan
, Adnan Yazici, Ahmet Sacan, Ismail H. Toroslu, Esra Acar:
Comparison of feature-based and image registration-based retrieval of image data using multidimensional data access methods. Data Knowl. Eng. 86: 124-145 (2013) - 2012
- [j7]Yiqian Zhou, Rehman Qureshi, Ahmet Sacan:
Data simulation and regulatory network reconstruction from time-series microarray data using stepwise multiple linear regression. Netw. Model. Anal. Health Informatics Bioinform. 1(1-2): 3-17 (2012) - [j6]Ahmet Sacan, Nesime Tatbul:
Letter from the Associate Editors. Proc. VLDB Endow. 5(10): i-viii (2012) - [j5]Hong Sun, Ahmet Sacan, Hakan Ferhatosmanoglu, Yusu Wang:
Smolign: A Spatial Motifs-Based Protein Multiple Structural Alignment Method. IEEE ACM Trans. Comput. Biol. Bioinform. 9(1): 249-261 (2012) - 2009
- [j4]Ahmet Sacan, Nilgun Ferhatosmanoglu, Hakan Ferhatosmanoglu:
MicroarrayDesigner: an online search tool and repository for near-optimal microarray experimental designs. BMC Bioinform. 10: 304 (2009) - 2008
- [j3]Ahmet Sacan, Hakan Ferhatosmanoglu, Huseyin Coskun:
CellTrack: an open-source software for cell tracking and motility analysis. Bioinform. 24(14): 1647-1649 (2008) - [j2]Ahmet Sacan, Ismail Hakki Toroslu, Hakan Ferhatosmanoglu:
Integrated search and alignment of protein structures. Bioinform. 24(24): 2872-2879 (2008) - 2007
- [j1]Ahmet Sacan, Ozgur Ozturk, Hakan Ferhatosmanoglu, Yusu Wang:
LFM-Pro: a tool for detecting significant local structural sites in proteins. Bioinform. 23(6): 709-716 (2007)
Conference and Workshop Papers
- 2017
- [c17]Chunyu Zhao, Yizhou Zang, Wei Quan, Xiaohua Hu, Ahmet Sacan:
HIV1-human protein-protein interaction prediction based on interface architecture similarity. BIBM 2017: 97-100 - [c16]Yiqian Zhou, Rehman Qureshi, Ahmet Sacan:
Analysis of Paired miRNA-mRNA Microarray Expression Data Using a Stepwise Multiple Linear Regression Model. ISBRA 2017: 59-70 - [c15]Heng Yang, Chunyu Zhao, Ahmet Sacan:
Unfolding the Protein Surface for Pattern Matching. ISBRA 2017: 84-95 - 2012
- [c14]Rehman Qureshi, Ahmet Sacan:
A weighted hypergeometric statistic for the enrichment of gene sets. BIBM 2012: 1-6 - [c13]Bo Song, Ahmet Sacan:
Automated wound identification system based on image segmentation and Artificial Neural Networks. BIBM 2012: 1-4 - [c12]Jim Havrilla, Ahmet Sacan:
Meta-analysis of protein structural alignment. BIBM Workshops 2012: 72-76 - 2011
- [c11]Heng Yang, Rehman Qureshi, Ahmet Sacan:
Protein Structure Visualization by Dimension Reduction and Texture Mapping. BIBM 2011: 437-442 - [c10]Jacqueline Gerhart, Ahmet Sacan:
BioDB: Integration of biological knowledgebases. BIBM Workshops 2011: 899 - [c9]Yiqian Zhou, Jacqueline Gerhart, Ahmet Sacan:
Reconstruction of gene regulatory networks by stepwise multiple linear regression from time-series microarray data. BIBM Workshops 2011: 1017-1019 - 2010
- [c8]Serdar Arslan, Ahmet Sacan, Esra Acar, Ismail Hakki Toroslu, Adnan Yazici:
Comparison of Multidimensional Data Access Methods for Feature-Based Image Retrieval. ICPR 2010: 3260-3263 - [c7]Erman Yükseltürk, Adnan Yazici, Ahmet Sacan, Özgür Kaya:
Online education experiences: information technologies certificate program at METU. ITiCSE 2010: 83-87 - 2009
- [c6]Guadalupe Canahuate, Tan Apaydin, Ahmet Sacan, Hakan Ferhatosmanoglu:
Secondary bitmap indexes with vertical and horizontal partitioning. EDBT 2009: 600-611 - 2008
- [c5]Ahmet Sacan, Ismail H. Toroslu, Hakan Ferhatosmanoglu:
Distance-based indexing of residue contacts for protein structure retrieval and alignment. BIBE 2008: 1-7 - [c4]Fatih Altiparmak, Ali Saman Tosun, Hakan Ferhatosmanoglu, Ahmet Sacan:
Automated Data Discovery in Similarity Score Queries. DASFAA 2008: 440-451 - [c3]Ahmet Sacan, Ismail Hakki Toroslu:
Approximate similarity search in genomic sequence databases using landmark-guided embedding. ICDE Workshops 2008: 338-345 - [c2]Ahmet Sacan, Ismail Hakki Toroslu:
Approximate Similarity Search in Genomic Sequence Databases Using Landmark-Guided Embedding. SISAP 2008: 43-50 - 2007
- [c1]Ahmet Sacan, Ismail Hakki Toroslu:
Amino Acid Substitution Matrices Based on 4-Body Delaunay Contact Profiles. BIBE 2007: 796-801
Editorship
- 2013
- [e2]Alex Szalay, Tamas Budavari, Magdalena Balazinska, Alexandra Meliou, Ahmet Sacan:
Conference on Scientific and Statistical Database Management, SSDBM '13, Baltimore, MD, USA, July 29 - 31, 2013. ACM 2013, ISBN 978-1-4503-1921-8 [contents] - 2010
- [e1]Erol Gelenbe, Ricardo Lent, Georgia Sakellari, Ahmet Sacan, Ismail Hakki Toroslu, Adnan Yazici:
Computer and Information Sciences - Proceedings of the 25th International Symposium on Computer and Information Sciences, London, UK, September 22-24, 2010. Lecture Notes in Electrical Engineering 62, Springer 2010 [contents]
Informal and Other Publications
- 2014
- [i1]Francis Bell, Chunyu Zhao, Ahmet Sacan:
PDBCirclePlot: A Novel Visualization Method for Protein Structures. CoRR abs/1402.5323 (2014)
Coauthor Index
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