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Emilie Pasche
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2020 – today
- 2023
- [j12]Emilie Pasche
, Anaïs Mottaz
, Julien Gobeill
, Pierre-André Michel, Déborah Caucheteur
, Nona Naderi
, Patrick Ruch
:
Assessing the use of supplementary materials to improve genomic variant discovery. Database J. Biol. Databases Curation 2023 (2023) - 2022
- [c33]Anaïs Mottaz
, Emilie Pasche
, Pierre-André Michel, Luc Mottin, Douglas Teodoro, Patrick Ruch:
Designing an Optimal Expansion Method to Improve the Recall of a Genomic Variant Curation-Support Service. MIE 2022: 839-843 - 2021
- [c32]Déborah Caucheteur, Emilie Pasche, Luc Mottin, Anaïs Mottaz, Julien Gobeill, Patrick Ruch:
SIB Text Mining at TREC Clinical Trials 2021. TREC 2021 - 2020
- [j11]Douglas Teodoro
, Julien Knafou, Nona Naderi, Emilie Pasche
, Julien Gobeill, Cecilia N. Arighi, Patrick Ruch
:
UPCLASS: a deep learning-based classifier for UniProtKB entry publications. Database J. Biol. Databases Curation 2020 (2020) - [j10]András Hatos
, Borbála Hajdu-Soltész, Alexander Miguel Monzon
, Nicolas Palopoli, Lucía Álvarez
, Burcu Aykaç Fas
, Claudio Bassot, Guillermo I. Benítez, Martina Bevilacqua
, Anastasia Chasapi
, Lucía B. Chemes
, Norman E. Davey
, Radoslav Davidovic
, A. Keith Dunker, Arne Elofsson, Julien Gobeill, Nicolás S. González Foutel, Govindarajan Sudha, Mainak Guharoy
, Tamás Horváth, Valentin Iglesias
, Andrey V. Kajava
, Orsolya P. Kovács, John Lamb, Matteo Lambrughi
, Tamas Lazar
, Jeremy Y. Leclercq
, Emanuela Leonardi
, Sandra Macedo-Ribeiro
, Mauricio Macossay-Castillo, Emiliano Maiani
, José A. Manso
, Cristina Marino Buslje
, Elizabeth Martínez-Pérez
, Bálint Mészáros
, Ivan Micetic, Giovanni Minervini
, Nikoletta Murvai
, Marco Necci
, Christos A. Ouzounis
, Mátyás Pajkos, Lisanna Paladin, Rita Pancsa, Elena Papaleo
, Gustavo D. Parisi, Emilie Pasche
, Pedro J. Barbosa Pereira
, Vasilis J. Promponas
, Jordi Pujols, Federica Quaglia
, Patrick Ruch
, Marco Salvatore, Éva Schád, Beáta Szabó
, Tamás Szaniszló
, Stella Tamana
, Ágnes Tantos, Nevena Veljkovic, Salvador Ventura
, Wim F. Vranken, Zsuzsanna Dosztányi
, Peter Tompa
, Silvio C. E. Tosatto
, Damiano Piovesan:
DisProt: intrinsic protein disorder annotation in 2020. Nucleic Acids Res. 48(Database-Issue): D269-D276 (2020) - [j9]Julien Gobeill
, Déborah Caucheteur
, Pierre-André Michel, Luc Mottin
, Emilie Pasche
, Patrick Ruch
:
SIB Literature Services: RESTful customizable search engines in biomedical literature, enriched with automatically mapped biomedical concepts. Nucleic Acids Res. 48(Webserver-Issue): W12-W16 (2020) - [c31]Déborah Caucheteur, Julien Gobeill, Anaïs Mottaz, Emilie Pasche
, Pierre-André Michel, Luc Mottin, Daniel J. Stekhoven
, Valérie Barbié, Patrick Ruch:
Text-Mining Services of the Swiss Variant Interpretation Platform for Oncology. MIE 2020: 884-888 - [c30]Emilie Pasche, Déborah Caucheteur, Luc Mottin, Anaïs Mottaz, Julien Gobeill, Patrick Ruch:
SIB Text Mining at TREC Precision Medicine 2020. TREC 2020
2010 – 2019
- 2019
- [c29]Julien Gobeill, Emilie Pasche, Patrick Ruch:
Retrieving the Evidence of a Free Text Annotation in a Scientific Article: A Data Free Approach. CICLing (1) 2019: 233-246 - [c28]Nona Naderi, Julien Gobeill, Douglas Teodoro, Emilie Pasche, Patrick Ruch:
A Baseline Approach for Early Detection of Signs of Anorexia and Self-harm in Reddit Posts. CLEF (Working Notes) 2019 - [c27]Déborah Caucheteur, Emilie Pasche, Julien Gobeill, Anaïs Mottaz, Luc Mottin, Patrick Ruch:
Designing retrieval models to contrast precision-driven ad hoc search vs. recall-driven treatment extraction in Precision Medicine. TREC 2019 - 2018
- [j8]Aurore Britan, Isabelle Cusin, Valérie Hinard, Luc Mottin
, Emilie Pasche
, Julien Gobeill
, Valentine Rech de Laval
, Anne Gleizes, Daniel Dinis Teixeira, Pierre-André Michel, Patrick Ruch, Pascale Gaudet
:
Accelerating annotation of articles via automated approaches: evaluation of the neXtA5 curation-support tool by neXtProt. Database J. Biol. Databases Curation 2018: bay129 (2018) - 2017
- [j7]Luc Mottin, Emilie Pasche
, Julien Gobeill
, Valentine Rech de Laval
, Anne Gleizes, Pierre-André Michel, Amos Bairoch
, Pascale Gaudet
, Patrick Ruch
:
Triage by ranking to support the curation of protein interactions. Database J. Biol. Databases Curation 2017: bax040 (2017) - [c26]Emilie Pasche, Julien Gobeill, Luc Mottin, Anaïs Mottaz, Douglas Teodoro, Paul Van Rijen, Patrick Ruch:
Customizing a Variant Annotation-Support Tool: an Inquiry into Probability Ranking Principles for TREC Precision Medicine. TREC 2017 - 2016
- [j6]Luc Mottin
, Julien Gobeill
, Emilie Pasche
, Pierre-André Michel, Isabelle Cusin, Pascale Gaudet
, Patrick Ruch
:
neXtA5: accelerating annotation of articles via automated approaches in neXtProt. Database J. Biol. Databases Curation 2016 (2016) - [c25]Luc Mottin, Julien Gobeill, Anaïs Mottaz, Emilie Pasche, Arnaud Gaudinat, Patrick Ruch:
BiTeM at CLEF eHealth Evaluation Lab 2016 Task 2: Multilingual Information Extraction. CLEF (Working Notes) 2016: 94-102 - 2015
- [j5]Julien Gobeill
, Arnaud Gaudinat
, Emilie Pasche
, Dina Vishnyakova
, Pascale Gaudet
, Amos Bairoch
, Patrick Ruch
:
Deep Question Answering for protein annotation. Database J. Biol. Databases Curation 2015 (2015) - 2014
- [j4]Julien Gobeill
, Emilie Pasche
, Dina Vishnyakova, Patrick Ruch:
Closing the loop: from paper to protein annotation using supervised Gene Ontology classification. Database J. Biol. Databases Curation 2014 (2014) - [j3]Emilie Pasche
, Julien Gobeill
, Olivier Kreim, Fatma Oezdemir-Zaech, Thérèse Vachon, Christian Lovis
, Patrick Ruch
:
Development and tuning of an original search engine for patent libraries in medicinal chemistry. BMC Bioinform. 15(S-1): S15 (2014) - [c24]Daniel Schober, Rémy Choquet, Kristof Depraetere, Frank Enders, Philipp Daumke, Marie-Christine Jaulent, Douglas Teodoro, Emilie Pasche, Christian Lovis, Martin Boeker:
DebugIT: Ontology-mediated Layered Data Integration for Real-time Antibiotics Resistance Surveillance. SWAT4LS 2014 - [c23]Julien Gobeill, Arnaud Gaudinat, Emilie Pasche, Patrick Ruch:
Full-texts representation with Medical Subject Headings, and co-citations network rerank- ing strategies for TREC 2014 Clinical Decision Support Track. TREC 2014 - 2013
- [j2]Julien Gobeill
, Emilie Pasche
, Dina Vishnyakova
, Patrick Ruch
:
Managing the data deluge: data-driven GO category assignment improves while complexity of functional annotation increases. Database J. Biol. Databases Curation 2013 (2013) - [c22]Dina Vishnyakova, Emilie Pasche
, Christian Lovis
, Patrick Ruch:
Utilization of Ontology Look-Up Services in Information Retrieval for Biomedical Literature. EFMI-STC 2013: 155-159 - [c21]Emilie Pasche
, Julien Gobeill, Dina Vishnyakova, Patrick Ruch, Christian Lovis
:
Use of Controlled Vocabularies to Improve Biomedical Information Retrieval Tasks. MedInfo 2013: 1068 - 2012
- [j1]Dina Vishnyakova
, Emilie Pasche
, Patrick Ruch
:
Using binary classification to prioritize and curate articles for the Comparative Toxicogenomics Database. Database J. Biol. Databases Curation 2012 (2012) - [c20]Dina Vishnyakova, Emilie Pasche
, Douglas Teodoro
, Christian Lovis
, Patrick Ruch:
Pathogens and Gene Product Normalization in the Biomedical Literature. EFMI-STC 2012: 89-93 - [c19]Emilie Pasche
, Julien Gobeill, Douglas Teodoro
, Arnaud Gaudinat
, Dina Vishnyakova, Christian Lovis
, Patrick Ruch:
A User-Friendly Tool for Medical-Related Patent Retrieval. EFMI-STC 2012: 121-125 - [c18]Emilie Pasche
, Julien Gobeill, Douglas Teodoro
, Arnaud Gaudinat
, Dina Vishnyakova, Christian Lovis
, Patrick Ruch:
An advanced search engine for patent analytics in medicinal chemistry. MIE 2012: 204-209 - [c17]Dina Vishnyakova, Emilie Pasche
, Julien Gobeill, Arnaud Gaudinat
, Christian Lovis
, Patrick Ruch:
Classification and Prioritization of Biomedical Literature for the Comparative Toxicogenomics Database. MIE 2012: 210-214 - 2011
- [c16]Douglas Teodoro
, Rémy Choquet, Daniel Schober, Giovanni Mels, Emilie Pasche
, Patrick Ruch, Christian Lovis
:
Interoperability Driven Integration of Biomedical Data Sources. MIE 2011: 185-189 - [c15]Emilie Pasche
, Julien Gobeill, Douglas Teodoro
, Dina Vishnyakova, Arnaud Gaudinat
, Patrick Ruch, Christian Lovis
:
Using Multimodal Mining to Drive Clinical Guidelines Development. MIE 2011: 477-481 - [c14]Julien Gobeill, Arnaud Gaudinat, Patrick Ruch, Emilie Pasche, Douglas Teodoro, Dina Vishnyakova:
BiTeM Group Report for TREC Chemical IR Track 2011. TREC 2011 - [c13]Julien Gobeill, Arnaud Gaudinat, Patrick Ruch, Emilie Pasche, Douglas Teodoro, Dina Vishnyakova:
BiTeM Group Report for TREC Medical Records Track 2011. TREC 2011 - 2010
- [c12]Douglas Teodoro, Julien Gobeill, Emilie Pasche, Dina Vishnyakova, Patrick Ruch, Christian Lovis:
Automatic Prior Art Searching and Patent Encoding at CLEF-IP '10. CLEF (Notebook Papers/LABs/Workshops) 2010 - [c11]Rémy Choquet, Douglas Teodoro, Giovanni Mels, Ariane Assélé Kama, Emilie Pasche, Patrick Ruch, Christian Lovis, Marie-Christine Jaulent:
Partage de Données Biomédicales sur le Web Sémantique. WSM@IC 2010: 3-12 - [c10]Rémy Choquet, Samiha Qouiyd, Emilie Pasche, Christel Daniel, Omar Boussaïd, Marie-Christine Jaulent:
Un modèle de connaissances pour mesurer la qualité d'une source d'information. IC 2010: 93-104 - [c9]Rémy Choquet, Samiha Qouiyd, David Ouagne, Emilie Pasche
, Christel Daniel, Omar Boussaïd, Marie-Christine Jaulent
:
The Information Quality Triangle: A methodology to assess Clinical Information quality. MedInfo 2010: 699-703 - [c8]Douglas Teodoro, Emilie Pasche, Dina Vishnyakova, Julien Gobeill, Patrick Ruch, Christian Lovis:
Automatic IPC Encoding and Novelty Tracking for Effective Patent Mining. NTCIR 2010: 309-317 - [c7]Julien Gobeill, Arnaud Gaudinat, Patrick Ruch, Emilie Pasche, Douglas Teodoro, Dina Vishnyakova:
BiTeM site Report for TREC Chemistry 2010: Impact of Citations Feeback for Patent Prior Art Search and Chemical Compounds Expansion for Ad Hoc Retrieval. TREC 2010
2000 – 2009
- 2009
- [c6]Emilie Pasche, Douglas Teodoro, Julien Gobeill, Patrick Ruch, Christian Lovis:
QA-driven Guidelines Generation for Bacteriotherapy. AMIA 2009 - [c5]Julien Gobeill, Emilie Pasche
, Douglas Teodoro
, Patrick Ruch:
Simple Pre and Post Processing Strategies for Patent Searching in CLEF Intellectual Property Track 2009. CLEF (1) 2009: 444-451 - [c4]Julien Gobeill, Douglas Theodoro, Emilie Pasche, Patrick Ruch:
Taking Benefit of Query and Document Expansion using MeSH Descriptors in Medical ImageCLEF 2009. CLEF (Working Notes) 2009 - [c3]Douglas Teodoro
, Rémy Choquet, Emilie Pasche
, Julien Gobeill, Christel Daniel, Patrick Ruch, Christian Lovis
:
Biomedical Data Management: A Proposal Framework. MIE 2009: 175-179 - [c2]Emilie Pasche
, Douglas Teodoro
, Julien Gobeill, Patrick Ruch, Christian Lovis
:
Automatic Medical Knowledge Acquisition Using Question-Answering. MIE 2009: 569-573 - [c1]Julien Gobeill, Douglas Teodoro, Emilie Pasche, Patrick Ruch:
Report on the TREC 2009 Experiments: Chemical IR Track. TREC 2009
Coauthor Index
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