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2020 – today
- 2023
[j13]Yu Huang, Riaz Asaria, Danail Stoyanov, Marinko Sarunic, Sophia Bano
:
PseudoSegRT: efficient pseudo-labelling for intraoperative OCT segmentation. Int. J. Comput. Assist. Radiol. Surg. 18(7): 1245-1252 (2023)- [j12]Shuo Chen, Da Ma, Sieun Lee, Timothy T. L. Yu, Gavin Xu, Donghuan Lu, Karteek Popuri, Myeong Jin Ju, Marinko V. Sarunic, Mirza Faisal Beg:
Segmentation-guided domain adaptation and data harmonization of multi-device retinal optical coherence tomography using cycle-consistent generative adversarial networks. Comput. Biol. Medicine 159: 106595 (2023) - [i7]Timothy T. L. Yu, Da Ma, Jayden Cole, Myeong Jin Ju, Mirza Faisal Beg, Marinko V. Sarunic:
Spectral Bandwidth Recovery of Optical Coherence Tomography Images using Deep Learning. CoRR abs/2301.00504 (2023) - 2022
- [j11]Da Ma, Meenakshi Kumar, Vikas Khetan, Parveen Sen, Muna Bhende, Shuo Chen, Timothy T. L. Yu, Sieun Lee, Eduardo V. Navajas, Joanne A. Matsubara, Myeong Jin Ju, Marinko V. Sarunic, Rajiv Raman, Mirza Faisal Beg:
Clinical explainable differential diagnosis of polypoidal choroidal vasculopathy and age-related macular degeneration using deep learning. Comput. Biol. Medicine 143: 105319 (2022) - [i6]Shuo Chen, Da Ma, Sieun Lee, Timothy T. L. Yu, Gavin Xu, Donghuan Lu, Karteek Popuri, Myeong Jin Ju, Marinko V. Sarunic, Mirza Faisal Beg:
Segmentation-guided Domain Adaptation and Data Harmonization of Multi-device Retinal Optical Coherence Tomography using Cycle-Consistent Generative Adversarial Networks. CoRR abs/2208.14635 (2022) - 2021
- [j10]Da Ma, Donghuan Lu, Shuo Chen, Morgan Heisler, Setareh Dabiri, Sieun Lee, Hyunwoo Lee, Gavin Weiguang Ding, Marinko V. Sarunic, Mirza Faisal Beg:
LF-UNet - A novel anatomical-aware dual-branch cascaded deep neural network for segmentation of retinal layers and fluid from optical coherence tomography images. Comput. Medical Imaging Graph. 94: 101988 (2021) - [c9]Timothy T. L. Yu, Da Ma, Jayden Cole, MyeongJin Ju, Mirza Faisal Beg, Marinko V. Sarunic:
Spectral Bandwidth Recovery of Optical Coherence Tomography Images using Deep Learning. ISPA 2021: 67-71 - [i5]Ricky Chen, Timothy T. L. Yu, Gavin Xu, Da Ma, Marinko V. Sarunic, Mirza Faisal Beg:
Domain Adaptation via CycleGAN for Retina Segmentation in Optical Coherence Tomography. CoRR abs/2107.02345 (2021) - 2020
- [j9]Da Ma, Manuel Jorge Cardoso, Maria A. Zuluaga, Marc Modat, Nick M. Powell, Frances K. Wiseman, Jon O. Cleary, Benjamin Sinclair, Ian F. Harrison, Bernard Siow, Karteek Popuri, Sieun Lee, Joanne A. Matsubara, Marinko V. Sarunic, Mirza Faisal Beg, Victor L. J. Tybulewicz, Elizabeth M. C. Fisher, Mark F. Lythgoe, Sébastien Ourselin:
Substantially thinner internal granular layer and reduced molecular layer surface in the cerebellar cortex of the Tc1 mouse model of down syndrome - a comprehensive morphometric analysis with active staining contrast-enhanced MRI. NeuroImage 223: 117271 (2020) - [c8]Da Ma, Donghuan Lu, Morgan Heisler, Setareh Dabiri, Sieun Lee, Gavin Weiguang Ding, Marinko V. Sarunic, Mirza Faisal Beg:
Cascade Dual-branch Deep Neural Networks for Retinal Layer and fluid Segmentation of Optical Coherence Tomography Incorporating Relative Positional Map. MIDL 2020: 493-502 - [i4]Julian Lo, Morgan Heisler, Vinicius Vanzan, Sonja Karst, Ivana Zadro Matovinovic, Sven Loncaric, Eduardo V. Navajas, Mirza Faisal Beg, Marinko V. Sarunic:
Microvasculature Segmentation and Inter-capillary Area Quantification of the Deep Vascular Complex using Transfer Learning. CoRR abs/2003.09033 (2020)
2010 – 2019
- 2019
- [j8]Donghuan Lu, Morgan Heisler, Sieun Lee, Gavin Weiguang Ding, Eduardo Navajas, Marinko V. Sarunic, Mirza Faisal Beg:
Deep-learning based multiclass retinal fluid segmentation and detection in optical coherence tomography images using a fully convolutional neural network. Medical Image Anal. 54: 100-110 (2019) - [j7]Hrvoje Bogunovic, Freerk G. Venhuizen, Sophie Klimscha, Stefanos Apostolopoulos, Alireza Bab-Hadiashar, Ulas Bagci, Mirza Faisal Beg, Loza Bekalo, Qiang Chen, Carlos Ciller, Karthik Gopinath, Amirali K. Gostar, Kiwan Jeon, Zexuan Ji, Sung Ho Kang, Dara D. Koozekanani, Donghuan Lu, Dustin Morley, Keshab K. Parhi, Hyoung Suk Park, Abdolreza Rashno, Marinko Sarunic, Saad Shaikh, Jayanthi Sivaswamy, Ruwan B. Tennakoon, Shivin Yadav, Sandro De Zanet, Sebastian M. Waldstein, Bianca S. Gerendas, Caroline Klaver, Clara I. Sánchez, Ursula Schmidt-Erfurth:
RETOUCH: The Retinal OCT Fluid Detection and Segmentation Benchmark and Challenge. IEEE Trans. Medical Imaging 38(8): 1858-1874 (2019) - [c7]Ivana Zadro Matovinovic, Sven Loncaric, Julian Lo, Morgan Heisler, Marinko Sarunic:
Transfer Learning with U-Net type model for Automatic Segmentation of Three Retinal Layers In Optical Coherence Tomography Images. ISPA 2019: 49-53 - [i3]Morgan Heisler, Forson Chan, Zaid Mammo, Chandrakumar Balaratnasingam, Pavle Prentasic, Gavin Docherty, MyeongJin Ju, Sanjeeva Rajapakse, Sieun Lee, Andrew B. Merkur, Andrew W. Kirker, David A. Albiani, David Maberley, K. Bailey Freund, Mirza Faisal Beg, Sven Loncaric, Marinko V. Sarunic, Eduardo V. Navajas:
Deep learning vessel segmentation and quantification of the foveal avascular zone using commercial and prototype OCT-A platforms. CoRR abs/1909.11289 (2019) - [i2]Donghuan Lu, Morgan Heisler, Da Ma, Setareh Dabiri, Sieun Lee, Gavin Weiguang Ding, Marinko V. Sarunic, Mirza Faisal Beg:
Cascaded Deep Neural Networks for Retinal Layer Segmentation of Optical Coherence Tomography with Fluid Presence. CoRR abs/1912.03418 (2019) - 2017
- [j6]Sieun Lee, Nicolas Charon, Benjamin Charlier, Karteek Popuri, Evgeniy Lebed, Marinko V. Sarunic, Alain Trouvé, Mirza Faisal Beg:
Atlas-based shape analysis and classification of retinal optical coherence tomography images using the functional shape (fshape) framework. Medical Image Anal. 35: 570-581 (2017) - [c6]Donghuan Lu, Gavin Weiguang Ding, Andrew B. Merkur, Marinko V. Sarunic, Mirza Faisal Beg:
Multiple instance learning for age-related macular degeneration diagnosis in optical coherence tomography images. ISBI 2017: 139-142 - [i1]Donghuan Lu, Morgan Heisler, Sieun Lee, Gavin Weiguang Ding, Marinko V. Sarunic, Mirza Faisal Beg:
Retinal Fluid Segmentation and Detection in Optical Coherence Tomography Images using Fully Convolutional Neural Network. CoRR abs/1710.04778 (2017) - 2015
- [j5]Sieun Lee, Evgeniy Lebed, Marinko V. Sarunic, Mirza Faisal Beg:
Exact Surface Registration of Retinal Surfaces From 3-D Optical Coherence Tomography Images. IEEE Trans. Biomed. Eng. 62(2): 609-617 (2015) - 2014
- [j4]Gavin Weiguang Ding, Eric Lin, Amanda Ribeiro, Marinko V. Sarunic, Glen F. Tibbits, Mirza Faisal Beg:
Automatic Cycle Averaging for Denoising Approximately Periodic Spatiotemporal Signals. IEEE Trans. Medical Imaging 33(8): 1749-1759 (2014) - 2013
- [j3]Andy Bo Wu, Evgeniy Lebed, Marinko Sarunic, Mirza Faisal Beg:
Quantitative Evaluation of Transform Domains for Compressive Sampling-Based Recovery of Sparsely Sampled Volumetric OCT Images. IEEE Trans. Biomed. Eng. 60(2): 470-478 (2013) - [c5]Gavin Weiguang Ding, Eric Lin, Amanda Ribeiro, Marinko V. Sarunic, Glen F. Tibbits, Mirza Faisal Beg:
On identification of sinoatrial node in zebrafish heart based on functional time series from optical mapping. EMBC 2013: 6518-6521 - [c4]Gavin Weiguang Ding, Mei Young, Serge Bourgault, Sieun Lee, David A. Albiani, Andrew W. Kirker, Farzin Forooghian, Marinko V. Sarunic, Andrew B. Merkur, Mirza Faisal Beg:
Automatic detection of subretinal fluid and sub-retinal pigment epithelium fluid in optical coherence tomography images. EMBC 2013: 7388-7391 - 2011
- [j2]Azadeh Yazdanpanah, Ghassan Hamarneh, Benjamin R. Smith, Marinko Sarunic:
Segmentation of Intra-Retinal Layers From Optical Coherence Tomography Images Using an Active Contour Approach. IEEE Trans. Medical Imaging 30(2): 484-496 (2011) - [c3]Lesley Shannon, Jian Li, Mohammad Reza Mohammadnia, Marinko Sarunic:
Evaluating the scalability of high-performance, Fourier-Domain Optical Coherence Tomography on GPGPUs and FPGAs. ACSCC 2011: 483-487 - [c2]Jian Li, Marinko Sarunic, Lesley Shannon:
Scalable, High Performance Fourier Domain Optical Coherence Tomography: Why FPGAs and Not GPGPUs. FCCM 2011: 49-56 - 2010
- [j1]Eli Gibson, Mei Young, Marinko Sarunic, Mirza Faisal Beg:
Optic Nerve Head Registration Via Hemispherical Surface and Volume Registration. IEEE Trans. Biomed. Eng. 57(10): 2592-2595 (2010)
2000 – 2009
- 2009
- [c1]Azadeh Yazdanpanah, Ghassan Hamarneh, Benjamin Smith, Marinko Sarunic:
Intra-retinal Layer Segmentation in Optical Coherence Tomography Using an Active Contour Approach. MICCAI (1) 2009: 649-656
Coauthor Index
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