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2020 – today
- 2024
[i15]Charlotte Bunne, Yusuf Roohani, Yanay Rosen, Ankit Gupta, Xikun Zhang, Marcel Roed, Theo Alexandrov, Mohammed AlQuraishi, Patricia Brennan, Daniel B. Burkhardt, Andrea Califano, Jonah Cool, Abby F. Dernburg, Kirsty Ewing, Emily B. Fox, Matthias Haury, Amy E. Herr, Eric Horvitz, Patrick D. Hsu, Viren Jain, Gregory R. Johnson, Thomas Kalil, David R. Kelley, Shana O. Kelley, Anna Kreshuk, Tim Mitchison, Stephani Otte, Jay Shendure, Nicolas J. Sofroniew, Fabian J. Theis, Christina V. Theodoris, Srigokul Upadhyayula, Marc Valer, Bo Wang, Eric Xing, Serena Yeung-Levy, Marinka Zitnik, Theofanis Karaletsos, Aviv Regev, Emma Lundberg, Jure Leskovec, Stephen R. Quake:
How to Build the Virtual Cell with Artificial Intelligence: Priorities and Opportunities. CoRR abs/2409.11654 (2024)- 2023
- [c12]Paul Hilt, Maedeh Zarvandi, Edgar Kaziakhmedov, Sourabh Bhide, Maria Leptin, Constantin Pape, Anna Kreshuk:
Reinforcement learning for instance segmentation with high-level priors. ICCV (Workshops) 2023: 3915-3924 - [i14]Annika Reinke, Minu Tizabi, Michael Baumgartner, Matthias Eisenmann, Doreen Heckmann-Nötzel, A. Emre Kavur, Tim Rädsch, Carole H. Sudre, Laura Ación
, Michela Antonelli, Tal Arbel, Spyridon Bakas, Arriel Benis, Matthew B. Blaschko, Florian Büttner, M. Jorge Cardoso, Veronika Cheplygina, Jianxu Chen, Evangelia Christodoulou, Beth A. Cimini, Gary S. Collins, Keyvan Farahani, Luciana Ferrer, Adrian Galdran, Bram van Ginneken, Ben Glocker, Patrick Godau, Robert Haase, Daniel A. Hashimoto, Michael M. Hoffman, Merel Huisman, Fabian Isensee, Pierre Jannin, Charles E. Kahn, Dagmar Kainmueller, Bernhard Kainz, Alexandros Karargyris, Alan Karthikesalingam, Hannes Kenngott, Jens Kleesiek, Florian Kofler, Thijs Kooi, Annette Kopp-Schneider, Michal Kozubek, Anna Kreshuk, Tahsin M. Kurç, Bennett A. Landman, Geert Litjens, Amin Madani, Klaus H. Maier-Hein, Anne L. Martel, Peter Mattson, Erik Meijering, Bjoern H. Menze, Karel G. M. Moons, Henning Müller, Brennan Nichyporuk, Felix Nickel, Jens Petersen, Susanne M. Rafelski, Nasir M. Rajpoot, Mauricio Reyes, Michael A. Riegler, Nicola Rieke, Julio Saez-Rodriguez, Clara I. Sánchez, Shravya Shetty, Maarten van Smeden, Ronald M. Summers, Abdel A. Taha, Aleksei Tiulpin, Sotirios A. Tsaftaris, Ben Van Calster, Gaël Varoquaux, Manuel Wiesenfarth, Ziv R. Yaniv, Paul F. Jäger, Lena Maier-Hein:
Understanding metric-related pitfalls in image analysis validation. CoRR abs/2302.01790 (2023) - 2022
- [j7]Alex Matskevych, Adrian Wolny, Constantin Pape, Anna Kreshuk:
From Shallow to Deep: Exploiting Feature-Based Classifiers for Domain Adaptation in Semantic Segmentation. Frontiers Comput. Sci. 4: 805166 (2022) - [c11]Adrian Wolny, Qin Yu, Constantin Pape, Anna Kreshuk:
Sparse Object-level Supervision for Instance Segmentation with Pixel Embeddings. CVPR 2022: 4392-4401 - [c10]Alberto Bailoni, Constantin Pape, Nathan Hütsch, Steffen Wolf, Thorsten Beier, Anna Kreshuk, Fred A. Hamprecht:
GASP, a generalized framework for agglomerative clustering of signed graphs and its application to Instance Segmentation. CVPR 2022: 11635-11645 - [i13]Lena Maier-Hein, Annika Reinke, Evangelia Christodoulou, Ben Glocker, Patrick Godau, Fabian Isensee, Jens Kleesiek, Michal Kozubek, Mauricio Reyes, Michael A. Riegler, Manuel Wiesenfarth, Michael Baumgartner, Matthias Eisenmann, Doreen Heckmann-Nötzel, A. Emre Kavur, Tim Rädsch, Minu Dietlinde Tizabi, Laura Ación, Michela Antonelli, Tal Arbel, Spyridon Bakas, Peter Bankhead, Arriel Benis, M. Jorge Cardoso, Veronika Cheplygina, Beth A. Cimini, Gary S. Collins, Keyvan Farahani, Bram van Ginneken, Daniel A. Hashimoto, Michael M. Hoffman, Merel Huisman, Pierre Jannin, Charles E. Kahn, Alexandros Karargyris, Alan Karthikesalingam, Hannes Kenngott, Annette Kopp-Schneider, Anna Kreshuk, Tahsin M. Kurç, Bennett A. Landman, Geert Litjens, Amin Madani, Klaus H. Maier-Hein, Anne L. Martel, Peter Mattson, Erik Meijering, Bjoern H. Menze, David Moher, Karel G. M. Moons, Henning Müller, Felix Nickel, Brennan Nichyporuk, Jens Petersen, Nasir M. Rajpoot, Nicola Rieke, Julio Saez-Rodriguez, Clarisa Sánchez Gutiérrez, Shravya Shetty, Maarten van Smeden, Carole H. Sudre, Ronald M. Summers, Abdel A. Taha, Sotirios A. Tsaftaris, Ben Van Calster, Gaël Varoquaux, Paul F. Jäger:
Metrics reloaded: Pitfalls and recommendations for image analysis validation. CoRR abs/2206.01653 (2022) - 2021
- [j6]Steffen Wolf, Alberto Bailoni, Constantin Pape, Nasim Rahaman, Anna Kreshuk, Ullrich Köthe, Fred A. Hamprecht:
The Mutex Watershed and its Objective: Efficient, Parameter-Free Graph Partitioning. IEEE Trans. Pattern Anal. Mach. Intell. 43(10): 3724-3738 (2021) - [i12]Adrian Wolny, Qin Yu, Constantin Pape, Anna Kreshuk:
Sparse Object-level Supervision for Instance Segmentation with Pixel Embeddings. CoRR abs/2103.14572 (2021) - [i11]Paul Hilt, Edgar Kaziakhmedov, Sourabh Bhide, Maria Leptin, Constantin Pape, Anna Kreshuk:
Stateless actor-critic for instance segmentation with high-level priors. CoRR abs/2107.02600 (2021) - [i10]Florian Levet, Anne E. Carpenter, Kevin W. Eliceiri, Anna Kreshuk, Peter Bankhead, Robert Haase:
Developing open-source software for bioimage analysis: opportunities and challenges. F1000Research 10: 302 (2021) - 2020
- [c9]Alberto Bailoni, Constantin Pape, Steffen Wolf, Anna Kreshuk, Fred A. Hamprecht:
Proposal-Free Volumetric Instance Segmentation from Latent Single-Instance Masks. GCPR 2020: 331-344 - [c8]Steffen Wolf, Yuyan Li, Constantin Pape, Alberto Bailoni, Anna Kreshuk, Fred A. Hamprecht:
The Semantic Mutex Watershed for Efficient Bottom-Up Semantic Instance Segmentation. ECCV (6) 2020: 208-224 - [i9]Alberto Bailoni, Constantin Pape, Steffen Wolf, Anna Kreshuk, Fred A. Hamprecht:
Proposal-Free Volumetric Instance Segmentation from Latent Single-Instance Masks. CoRR abs/2009.04998 (2020)
2010 – 2019
- 2019
- [j5]Constantin Pape, Alex Matskevych, Adrian Wolny, Julian Hennies, Giulia Mizzon, Marion Louveaux, Jacob Musser, Alexis Maizel, Detlev Arendt, Anna Kreshuk:
Leveraging Domain Knowledge to Improve Microscopy Image Segmentation With Lifted Multicuts. Frontiers Comput. Sci. 1: 6 (2019) - [j4]Sharon C. Yates, Nicolaas E. Groeneboom, Christopher Coello, Stefan F. Lichtenthaler, Peer-Hendrik Kuhn, Hans-Ulrich Demuth, Maike Hartlage-Rübsamen, Steffen Roßner, Trygve B. Leergaard, Anna Kreshuk, Maja A. Puchades, Jan G. Bjaalie:
QUINT: Workflow for Quantification and Spatial Analysis of Features in Histological Images From Rodent Brain. Frontiers Neuroinformatics 13: 75 (2019) - [c7]Joris Roels, Julian Hennies, Yvan Saeys, Wilfried Philips, Anna Kreshuk:
Domain Adaptive Segmentation In Volume Electron Microscopy Imaging. ISBI 2019: 1519-1522 - [c6]Artem Lukoyanov, Isabella Haberbosch, Constantin Pape, Alwin Krämer, Yannick Schwab, Anna Kreshuk:
Synthetic Patches, Real Images: Screening for Centrosome Aberrations in EM Images of Human Cancer Cells. MICCAI (1) 2019: 523-531 - [i8]Steffen Wolf, Alberto Bailoni, Constantin Pape, Nasim Rahaman, Anna Kreshuk, Ullrich Köthe, Fred A. Hamprecht:
The Mutex Watershed and its Objective: Efficient, Parameter-Free Image Partitioning. CoRR abs/1904.12654 (2019) - [i7]Constantin Pape, Alex Matskevych, Julian Hennies, Anna Kreshuk:
Leveraging Domain Knowledge to improve EM image segmentation with Lifted Multicuts. CoRR abs/1905.10535 (2019) - [i6]Alberto Bailoni, Constantin Pape, Steffen Wolf, Thorsten Beier, Anna Kreshuk, Fred A. Hamprecht:
A Generalized Framework for Agglomerative Clustering of Signed Graphs applied to Instance Segmentation. CoRR abs/1906.11713 (2019) - [i5]Artem Lukoyanov, Isabella Haberbosch, Constantin Pape, Alwin Kraemer, Yannick Schwab, Anna Kreshuk:
Synthetic patches, real images: screening for centrosome aberrations in EM images of human cancer cells. CoRR abs/1908.10109 (2019) - [i4]Steffen Wolf, Yuyan Li, Constantin Pape, Alberto Bailoni, Anna Kreshuk, Fred A. Hamprecht:
The Semantic Mutex Watershed for Efficient Bottom-Up Semantic Instance Segmentation. CoRR abs/1912.12717 (2019) - 2018
- [j3]Nikola Krasowski, Thorsten Beier, Graham Knott, Ullrich Köthe, Fred A. Hamprecht, Anna Kreshuk:
Neuron Segmentation With High-Level Biological Priors. IEEE Trans. Medical Imaging 37(4): 829-839 (2018) - [c5]Steffen Wolf, Constantin Pape, Alberto Bailoni, Nasim Rahaman, Anna Kreshuk, Ullrich Köthe, Fred A. Hamprecht:
The Mutex Watershed: Efficient, Parameter-Free Image Partitioning. ECCV (4) 2018: 571-587 - [i3]Joris Roels, Julian Hennies, Yvan Saeys, Wilfried Philips, Anna Kreshuk:
Domain Adaptive Segmentation in Volume Electron Microscopy Imaging. CoRR abs/1810.09734 (2018) - 2017
- [c4]Constantin Pape, Thorsten Beier, Peter Li, Viren Jain, Davi D. Bock, Anna Kreshuk:
Solving Large Multicut Problems for Connectomics via Domain Decomposition. ICCV Workshops 2017: 1-10 - 2015
- [c3]Nikola Krasowski, Thorsten Beier, Graham W. Knott, Ullrich Köthe, Fred A. Hamprecht, Anna Kreshuk:
Improving 3D EM data segmentation by joint optimization over boundary evidence and biological priors. ISBI 2015: 536-539 - [c2]Anna Kreshuk, Jan Funke, Albert Cardona, Fred A. Hamprecht:
Who Is Talking to Whom: Synaptic Partner Detection in Anisotropic Volumes of Insect Brain. MICCAI (1) 2015: 661-668 - [i2]Ilka Antcheva, Maarten Ballintijn, Bertrand Bellenot, Marek Biskup, Rene Brun, Nenad Buncic, Philippe Canal, Diego Casadei, Olivier Couet, Valery Fine, Leandro Franco, Gerardo Ganis, Andrei Gheata, David González Maline, Masaharu Goto, Jan Iwaszkiewicz, Anna Kreshuk, Diego Marcos Segura, Richard Maunder, Lorenzo Moneta, Axel Naumann, Eddy Offermann, Valeriy Onuchin, Suzanne Panacek, Fons Rademakers, Paul Russo, Matevz Tadel:
ROOT - A C++ Framework for Petabyte Data Storage, Statistical Analysis and Visualization. CoRR abs/1508.07749 (2015) - 2012
- [b1]Anna Kreshuk:
Automated Analysis of Biomedical Data from Low to High Resolution. Heidelberg University, Germany, 2012 - 2011
- [j2]Ilka Antcheva, Maarten Ballintijn, Bertrand Bellenot, Marek Biskup, Rene Brun, Nenad Buncic, Philippe Canal, Diego Casadei, Olivier Couet, Valery Fine, Leandro Franco, Gerardo Ganis, Andrei Gheata, David González Maline, Masaharu Goto, Jan Iwaszkiewicz, Anna Kreshuk, Diego Marcos Segura, Richard Maunder, Lorenzo Moneta, Axel Naumann:
ROOT - A C++ framework for petabyte data storage, statistical analysis and visualization. Comput. Phys. Commun. 182(6): 1384-1385 (2011) - [c1]Anna Kreshuk, Christoph N. Straehle, Christoph Sommer, Ullrich Köthe, Graham Knott, Fred A. Hamprecht:
Automated segmentation of synapses in 3D EM data. ISBI 2011: 220-223
2000 – 2009
- 2009
- [j1]Ilka Antcheva, Maarten Ballintijn, Bertrand Bellenot, Marek Biskup, Rene Brun, Nenad Buncic, Philippe Canal, Diego Casadei, Olivier Couet, Valery Fine, Leandro Franco, Gerardo Ganis, Andrei Gheata, David González Maline, Masaharu Goto, Jan Iwaszkiewicz, Anna Kreshuk, Diego Marcos Segura, Richard Maunder, Lorenzo Moneta:
ROOT - A C++ framework for petabyte data storage, statistical analysis and visualization. Comput. Phys. Commun. 180(12): 2499-2512 (2009) - [i1]Rene Brun, Philippe Canal, Mario Frank, Anna Kreshuk, S. Linev, Paul Russo, Fons Rademakers:
Developments in ROOT I/O and trees. CoRR abs/0901.0886 (2009)
Coauthor Index
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