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ORCIDDiego di Bernardo
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2020 – today
- 2021
[d2]Giansimone Perrino
, Sara Napolitano, Francesca Galdi, Antonella La Regina, Davide Fiore, Teresa Giuliano, Mario di Bernardo, Diego di Bernardo:
Automatic synchronisation of the cell cycle in budding yeast through closed-loop feedback control. Zenodo, 2021
- 2020
- [j24]Francesco Napolitano, Diego Carrella, Xin Gao, Diego di Bernardo:
gep2pep: a bioconductor package for the creation and analysis of pathway-based expression profiles. Bioinform. 36(6): 1944-1945 (2020) - [d1]Giansimone Perrino, Sara Napolitano, Francesca Galdi, Antonella La Regina, Davide Fiore, Teresa Giuliano, Mario di Bernardo, Diego di Bernardo:
Cyber-yeast: Automatic synchronisation of the cell cycle in budding yeast through closed-loop feedback control. Zenodo, 2020
2010 – 2019
- 2019
- [j23]Domenico Rea, Giansimone Perrino, Diego di Bernardo, Livia Marcellino, Diego Romano:
A GPU algorithm for tracking yeast cells in phase-contrast microscopy images. Int. J. High Perform. Comput. Appl. 33(4) (2019) - [c14]Mustafa Khammash, Mario di Bernardo, Diego di Bernardo:
Cybergenetics: Theory and Methods for Genetic Control System. CDC 2019: 916-926 - [c13]Giansimone Perrino, Davide Fiore, Sara Napolitano, Francesca Galdi, Antonella La Regina, Mario di Bernardo, Diego di Bernardo:
Feedback control promotes synchronisation of the cell-cycle across a population of yeast cells. CDC 2019: 933-938 - [c12]Giansimone Perrino, Davide Fiore, Sara Napolitano, Mario di Bernardo, Diego di Bernardo:
Towards feedback control of the cell-cycle across a population of yeast cells. ECC 2019: 2644-2650 - 2018
- [j22]Francesco Napolitano, Diego Carrella, Barbara Mandriani, Sandra Pisonero-Vaquero, Francesco Sirci, Diego L. Medina, Nicola Brunetti-Pierri, Diego di Bernardo:
gene2drug: a computational tool for pathway-based rational drug repositioning. Bioinform. 34(9): 1498-1505 (2018) - 2016
- [j21]Francesco Napolitano, Francesco Sirci, Diego Carrella, Diego di Bernardo:
Drug-set enrichment analysis: a novel tool to investigate drug mode of action. Bioinform. 32(2): 235-241 (2016) - [c11]Giansimone Perrino, Diego di Bernardo:
Modelling, simulation and control of single cell expression dynamics of the galactose-inducible promoter in yeast. CDC 2016: 3344-3349 - 2015
- [j20]Gennaro Gambardella, Ivana Peluso, Sandro Montefusco, Mukesh Bansal, Diego L. Medina, Neil D. Lawrence, Diego di Bernardo:
A reverse-engineering approach to dissect post-translational modulators of transcription factor's activity from transcriptional data. BMC Bioinform. 16: 279:1-279:9 (2015) - [j19]Roberto Pagliarini, Mara Sangiovanni, Adriano Peron, Diego di Bernardo:
Combining flux balance analysis and model checking for metabolic network validation and analysis. Nat. Comput. 14(3): 341-354 (2015) - 2014
- [j18]Diego Carrella, Francesco Napolitano, Rossella Rispoli, Mario Miglietta, Annamaria Carissimo, Luisa Cutillo, Francesco Sirci, Francesco Gregoretti, Diego di Bernardo:
Mantra 2.0: an online collaborative resource for drug mode of action and repurposing by network analysis. Bioinform. 30(12): 1787-1788 (2014) - [j17]Filippo Menolascina, Gianfranco Fiore, Emanuele Orabona, Luca De Stefano, Mike Ferry, Jeff Hasty, Mario di Bernardo, Diego di Bernardo:
In-Vivo Real-Time Control of Protein Expression from Endogenous and Synthetic Gene Networks. PLoS Comput. Biol. 10(5) (2014) - 2013
- [j16]Gennaro Gambardella, Maria Nicoletta Moretti, Rossella de Cegli, Luca Cardone, Adriano Peron, Diego di Bernardo:
Differential network analysis for the identification of condition-specific pathway activity and regulation. Bioinform. 29(14): 1776-1785 (2013) - [j15]Francesco Iorio, Julio Saez-Rodriguez, Diego di Bernardo:
Network based elucidation of drug response: from modulators to targets. BMC Syst. Biol. 7: 139 (2013) - [j14]Roberto Pagliarini, Diego di Bernardo:
A Genome-Scale Modeling Approach to Study Inborn Errors of Liver Metabolism: Toward an In Silico Patient. J. Comput. Biol. 20(5): 383-397 (2013) - [j13]Marco Di Stefano, Angelo Rosa, Vincenzo Belcastro, Diego di Bernardo, Cristian Micheletti:
Colocalization of Coregulated Genes: A Steered Molecular Dynamics Study of Human Chromosome 19. PLoS Comput. Biol. 9(3) (2013) - 2012
- [j12]Vincenzo Belcastro, Francesco Gregoretti, Velia Siciliano, Michele Santoro, Giovanni D'Angelo, Gennaro Oliva, Diego di Bernardo:
Reverse Engineering and Analysis of Genome-Wide Gene Regulatory Networks from Gene Expression Profiles Using High-Performance Computing. IEEE ACM Trans. Comput. Biol. Bioinform. 9(3): 668-678 (2012) - 2011
- [j11]Filippo Menolascina, Mario di Bernardo, Diego di Bernardo:
Analysis, design and implementation of a novel scheme for in-vivo control of synthetic gene regulatory networks. Autom. 47(6): 1265-1270 (2011) - [j10]Giulia Cuccato, Athanasios Polynikis, Velia Siciliano, Mafalda Graziano, Mario di Bernardo, Diego di Bernardo:
Modeling RNA interference in mammalian cells. BMC Syst. Biol. 5: 19 (2011) - [j9]Athanasios Polynikis, Giulia Cuccato, Stefania Criscuolo, Stephen John Hogan, Mario di Bernardo, Diego di Bernardo:
Design and Construction of a Versatile Synthetic Network for Bistable Gene Expression in Mammalian Systems. J. Comput. Biol. 18(2): 195-203 (2011) - [j8]Velia Siciliano, Filippo Menolascina, Lucia Marucci, Chiara Fracassi, Immacolata Garzilli, Maria Nicoletta Moretti, Diego di Bernardo:
Construction and Modelling of an Inducible Positive Feedback Loop Stably Integrated in a Mammalian Cell-Line. PLoS Comput. Biol. 7(6) (2011) - 2010
- [j7]Darong Lai, Hongtao Lu, Mario Lauria, Diego di Bernardo, Christine Nardini:
Mania: a Gene Network Reverse Algorithm for Compounds Mode-of-Action and genes Interactions Inference. Adv. Complex Syst. 13(1): 83-94 (2010) - [c10]Filippo Menolascina, Mario di Bernardo, Diego di Bernardo:
Design and implementation of a feedback control strategy for IRMA, a novel synthetic gene regulatory network. CDC 2010: 2535-2540 - [c9]Francesco Iorio, Loredana Murino, Diego di Bernardo, Giancarlo Raiconi, Roberto Tagliaferri:
Gene ontology fuzzy-enrichment analysis to investigate drug mode-of-action. IJCNN 2010: 1-7
2000 – 2009
- 2009
- [j6]Francesco Iorio, Roberto Tagliaferri, Diego di Bernardo:
Identifying Network of Drug Mode of Action by Gene Expression Profiling. J. Comput. Biol. 16(2): 241-251 (2009) - [c8]Darong Lai, Hongtao Lu, Mario Lauria, Diego di Bernardo, Christine Nardini:
MANIA: A Gene Network Reverse Algorithm for Compounds Mode-of-Action and Genes Interactions Inference. Complex (1) 2009: 389-399 - 2008
- [c7]Francesco Iorio, Roberto Tagliaferri, Diego di Bernardo:
Building Maps of Drugs Mode-of-Action from Gene Expression Data. CIBB 2008: 56-65 - [c6]Vitoantonio Bevilacqua, Paolo Pannarale, Giuseppe Mastronardi, Amalia Azzariti, Stefania Tommasi, Filippo Menolascina, Francesco Iorio, Diego di Bernardo, Angelo Paradiso, Nicola A. Colabufo, Francesco Berardi, Roberto Perrone, Roberto Tagliaferri:
High-Throughput Analysis of the Drug Mode of Action of PB28, MC18 and MC70, Three Cyclohexylpiperazine Derivative New Molecules. ICIC (2) 2008: 1085-1092 - 2007
- [j5]Carlo Cosentino, Walter Curatola, Mukesh Bansal, Diego di Bernardo, Francesco Amato:
Piecewise affine approach to inferring cell cycle regulatory network in fission yeast. Biomed. Signal Process. Control. 2(3): 208-216 (2007) - [c5]Francesco Amato, Carlo Cosentino, Walter Curatola, Diego di Bernardo:
LMI-based Algorithm for the Reconstruction of Biological Networks. ACC 2007: 2720-2725 - 2006
- [j4]Roberto Amato, Angelo Ciaramella, Natalia Deniskina, Carmine Del Mondo, Diego di Bernardo, Ciro Donalek, Giuseppe Longo, Giuseppe Mangano, Gennaro Miele, Giancarlo Raiconi, Antonino Staiano, Roberto Tagliaferri:
A multi-step approach to time series analysis and gene expression clustering. Bioinform. 22(5): 589-596 (2006) - [j3]Mukesh Bansal, Giusy Della Gatta, Diego di Bernardo:
Inference of gene regulatory networks and compound mode of action from time course gene expression profiles. Bioinform. 22(7): 815-822 (2006) - 2005
- [j2]Angelo Boccia, Mauro Petrillo, Diego di Bernardo, Alessandro Guffanti, Flavio Mignone, Stefano Confalonieri, Lucilla Luzi, Graziano Pesole, Giovanni Paolella, Andrea Ballabio, Sandro Banfi:
DG-CST (Disease Gene Conserved Sequence Tags), a database of human-mouse conserved elements associated to disease genes. Nucleic Acids Res. 33(Database-Issue): 505-510 (2005) - [c4]Roberto Amato, Angelo Ciaramella, Natalia Deniskina, Carmine Del Mondo, Diego di Bernardo, Ciro Donalek, Giuseppe Longo, Giuseppe Mangano, Gennaro Miele, Giancarlo Raiconi, Antonino Staiano, Roberto Tagliaferri:
NEC for Gene Expression Analysis. WILF 2005: 246-251 - 2004
- [c3]Antonino Staiano, Lara De Vinco, Angelo Ciaramella, Giancarlo Raiconi, Roberto Tagliaferri, Roberto Amato, Giuseppe Longo, Ciro Donalek, Gennaro Miele, Diego di Bernardo:
Probabilistic Principal Surfaces for Yeast Gene Microarray Data Mining. ICDM 2004: 202-208 - [c2]Diego di Bernardo, Timothy S. Gardner, James J. Collins:
Robust Identification of Large Genetic Networks. Pacific Symposium on Biocomputing 2004: 486-497 - [c1]Antonino Staiano, Roberto Tagliaferri, Lara De Vinco, Angelo Ciaramella, Giancarlo Raiconi, Giuseppe Longo, Gennaro Miele, Roberto Amato, Carmine Del Mondo, Ciro Donalek, Giuseppe Mangano, Diego di Bernardo:
Mining Yeast Gene Microarray Data with Latent Variable Models. WIRN 2004: 81-89 - 2003
- [j1]Diego di Bernardo, Thomas A. Down, Tim J. P. Hubbard:
ddbRNA: detection of conserved secondary structures in multiple alignments. Bioinform. 19(13): 1606-1611 (2003)
Coauthor Index
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