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Luca Pinello
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Journal Articles
- 2023
- [j11]Manuel Tognon
, Rosalba Giugno, Luca Pinello:
A survey on algorithms to characterize transcription factor binding sites. Briefings Bioinform. 24(3) (2023) - 2021
- [j10]Manuel Tognon
, Vincenzo Bonnici
, Erik Garrison
, Rosalba Giugno
, Luca Pinello:
GRAFIMO: Variant and haplotype aware motif scanning on pangenome graphs. PLoS Comput. Biol. 17(9) (2021) - 2020
- [j9]Samuele Cancellieri
, Matthew C. Canver, Nicola Bombieri, Rosalba Giugno
, Luca Pinello:
CRISPRitz: rapid, high-throughput and variant-aware in silico off-target site identification for CRISPR genome editing. Bioinform. 36(7): 2001-2008 (2020) - [j8]Luca Albergante
, Evgeny M. Mirkes
, Jonathan Bac
, Huidong Chen
, Alexis Martin, Louis Faure
, Emmanuel Barillot
, Luca Pinello, Alexander N. Gorban
, Andrei Yu. Zinovyev
:
Robust and Scalable Learning of Complex Intrinsic Dataset Geometry via ElPiGraph. Entropy 22(3): 296 (2020) - 2019
- [j7]Matthew C. Canver, Daniel E. Bauer, Takahiro Maeda
, Luca Pinello:
DrugThatGene: integrative analysis to streamline the identification of druggable genes, pathways and protein complexes from CRISPR screens. Bioinform. 35(11): 1981-1984 (2019) - 2018
- [j6]Luca Pinello
, Rick Farouni
, Guo-Cheng Yuan:
Haystack: systematic analysis of the variation of epigenetic states and cell-type specific regulatory elements. Bioinform. 34(11): 1930-1933 (2018) - [j5]Kendell Clement, Rick Farouni
, Daniel E. Bauer, Luca Pinello:
AmpUMI: design and analysis of unique molecular identifiers for deep amplicon sequencing. Bioinform. 34(13): i202-i210 (2018) - 2014
- [j4]Luca Pinello
, Giosuè Lo Bosco
, Guo-Cheng Yuan:
Applications of alignment-free methods in epigenomics. Briefings Bioinform. 15(3): 419-430 (2014) - 2013
- [j3]Raffaele Giancarlo, Giosuè Lo Bosco
, Luca Pinello
, Filippo Utro
:
A methodology to assess the intrinsic discriminative ability of a distance function and its interplay with clustering algorithms for microarray data analysis. BMC Bioinform. 14(S-1): S6 (2013) - 2011
- [j2]Luca Pinello
, Giosuè Lo Bosco
, Bret M. Hanlon, Guo-Cheng Yuan:
A motif-independent metric for DNA sequence specificity. BMC Bioinform. 12: 408 (2011) - 2009
- [j1]Vito Di Gesù, Giosuè Lo Bosco
, Luca Pinello:
A one class KNN for signal identification: a biological case study. Int. J. Knowl. Eng. Soft Data Paradigms 1(4): 376-389 (2009)
Conference and Workshop Papers
- 2014
- [c8]Giosuè Lo Bosco
, Luca Pinello
:
A New Feature Selection Methodology for K-mers Representation of DNA Sequences. CIBB 2014: 99-108 - 2011
- [c7]Francesco Benvegna, Antonino D'Alessandro
, Giosuè Lo Bosco
, Dario Luzio, Luca Pinello
, Domenico Tegolo
:
A New Dissimilarity Measure for Clustering Seismic Signals. ICIAP (2) 2011: 434-443 - 2010
- [c6]Raffaele Giancarlo, Giosuè Lo Bosco
, Luca Pinello
, Filippo Utro
:
The Three Steps of Clustering in the Post-Genomic Era: A Synopsis. CIBB 2010: 13-30 - [c5]Raffaele Giancarlo, Giosuè Lo Bosco
, Luca Pinello
:
Distance Functions, Clustering Algorithms and Microarray Data Analysis. LION 2010: 125-138 - 2009
- [c4]Giosuè Lo Bosco
, Luca Pinello
:
A Fuzzy One Class Classifier for Multi Layer Model. WILF 2009: 124-131 - 2008
- [c3]Vito Di Gesù, Giosuè Lo Bosco
, Luca Pinello
:
Interval Length Analysis in Multi Layer Model. CIBB 2008: 114-122 - [c2]Vito Di Gesù, Giosuè Lo Bosco, Luca Pinello:
A One Class Classifier for Signal Identification: A Biological Case Study. KES (3) 2008: 747-754 - 2007
- [c1]Davide F. V. Corona, Vito Di Gesù, Giosuè Lo Bosco, Luca Pinello, Guo-Cheng Yuan:
A New Multi-Layers Method to Analyze Gene Expression. KES (3) 2007: 862-869
Informal and Other Publications
- 2019
- [i3]David Laehnemann
, Johannes Köster
, Ewa Szczurek, Davis J. McCarthy
, Stephanie C. Hicks
, Mark D. Robinson
, Catalina A. Vallejos
, Niko Beerenwinkel, Kieran R. Campbell, Ahmed Mahfouz
, Luca Pinello, Pavel Skums, Alexandros Stamatakis
, Camille Stephan-Otto Attolini, Samuel Aparicio, Jasmijn A. Baaijens
, Marleen Balvert, Buys de Barbanson, Antonio Cappuccio, Giacomo Corleone, Bas E. Dutilh
, Maria Florescu
, Victor Guryev, Rens Holmer
, Katharina Jahn, Thamar Jessurun Lobo
, Emma M. Keizer, Indu Khatri
, Szymon M. Kielbasa
, Jan O. Korbel, Alexey M. Kozlov
, Tzu-Hao Kuo, Boudewijn P. F. Lelieveldt, Ion I. Mandoiu
, John C. Marioni
, Tobias Marschall
, Felix Mölder
, Amir Niknejad, Lukasz Raczkowski, Marcel J. T. Reinders, Jeroen de Ridder
, Antoine-Emmanuel Saliba
, Antonios Somarakis, Oliver Stegle, Fabian J. Theis, Huan Yang, Alex Zelikovsky, Alice C. McHardy, Benjamin J. Raphael, Sohrab P. Shah, Alexander Schönhuth:
12 Grand Challenges in Single-Cell Data Science. PeerJ Prepr. 7: e27885 (2019) - 2018
- [i2]Luca Albergante, Evgeny M. Mirkes, Huidong Chen, Alexis Martin, Louis Faure, Emmanuel Barillot, Luca Pinello, Alexander N. Gorban, Andrei Yu. Zinovyev:
Robust and scalable learning of data manifolds with complex topologies via ElPiGraph. CoRR abs/1804.07580 (2018) - 2011
- [i1]Luca Pinello:
Multi Layer Analysis. CoRR abs/1107.5349 (2011)
Coauthor Index
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