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Roland Eils
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2020 – today
- 2023
- [j60]Severin Kohler
, Diego Boscá, Florian Kärcher
, Birger Haarbrandt, Manuel Prinz, Michael Marschollek, Roland Eils
:
Eos and OMOCL: Towards a seamless integration of openEHR records into the OMOP Common Data Model. J. Biomed. Informatics 144: 104437 (2023) - [j59]Matthieu-P. Schapranow
, Florian Borchert, Nina Bougatf, Hauke Hund, Roland Eils:
Software-Tool Support for Collaborative, Virtual, Multi-Site Molecular Tumor Boards. SN Comput. Sci. 4(4): 358 (2023) - [c70]Nils Hoffmann
, Irena Maus
, Sebastian Beier
, Peter Belmann, Jan Krüger
, Andreas Tauch, Alexander Goesmann
, Roland Eils, Peer Bork
, Oliver Kohlbacher
, Ursula Kummer, Rolf Backofen
, Ivo Buchhalter
, Alexander Sczyrba
:
Embedding the de.NBI Cloud in the National Research Data Infrastructure Activities. CoRDI 2023 - [c69]Armin Müller
, Lara-Sophie Christmann
, Severin Kohler
, Roland Eils
, Fabian Prasser
:
Machine Learning for Medical Data Integration. MIE 2023: 691-695 - [c68]Andre Vauvelle, Benjamin Wild, Roland Eils, Spiros C. Denaxas:
Differentiable sorting for censored time-to-event data. NeurIPS 2023 - [i1]Andre Vauvelle, Benjamin Wild, Sera Aylin Cakiroglu, Roland Eils, Spiros C. Denaxas:
Diffsurv: Differentiable sorting for censored time-to-event data. CoRR abs/2304.13594 (2023) - 2022
- [c67]Hans-Ulrich Prokosch, Thomas Bahls, Martin Bialke, Jürgen Eils, Christian Fegeler, Julian Gründner, Birger Haarbrandt, Christopher Hampf, Wolfgang Hoffmann, Hauke Hund, Marvin O. Kampf, Lorenz A. Kapsner
, Piotr Kasprzak, Oliver Kohlbacher, Dagmar Krefting, Jonathan Mang
, Michael Marschollek
, Sebastian Mate, Armin Müller
, Fabian Prasser
, Julian Sass
, Sebastian C. Semler, Holger Stenzhorn, Sylvia Thun
, Sven Zenker, Roland Eils:
The COVID-19 Data Exchange Platform of the German University Medicine. MIE 2022: 674-678 - 2021
- [j58]Gerhard Mayer
, Wolfgang Müller, Karin Schork
, Julian Uszkoreit
, Andreas Weidemann, Ulrike Wittig, Maja Rey, Christian Quast, Janine Felden, Frank Oliver Glöckner, Matthias Lange
, Daniel Arend, Sebastian Beier, Astrid Junker, Uwe Scholz, Danuta Schüler
, Hans A. Kestler
, Daniel Wibberg, Alfred Pühler, Sven Twardziok
, Jürgen Eils, Roland Eils
, Steve Hoffmann, Martin Eisenacher
, Michael Turewicz
:
Implementing FAIR data management within the German Network for Bioinformatics Infrastructure (de.NBI) exemplified by selected use cases. Briefings Bioinform. 22(5) (2021) - [j57]Florian Borchert, Andreas Mock
, Aurelie Tomczak, Jonas Hügel, Samer Alkarkoukly, Alexander Knurr, Anna-Lena Volckmar
, Albrecht Stenzinger, Peter Schirmacher, Jürgen Debus, Dirk Jäger, Thomas Longerich, Stefan Fröhling, Roland Eils
, Nina Bougatf, Ulrich Sax
, Matthieu-P. Schapranow:
Knowledge bases and software support for variant interpretation in precision oncology. Briefings Bioinform. 22(6) (2021) - [j56]Florian Borchert, Andreas Mock
, Aurelie Tomczak, Jonas Hügel
, Samer Alkarkoukly
, Alexander Knurr, Anna-Lena Volckmar
, Albrecht Stenzinger, Peter Schirmacher, Jürgen Debus, Dirk Jäger, Thomas Longerich, Stefan Fröhling, Roland Eils
, Nina Bougatf, Ulrich Sax
, Matthieu-P. Schapranow:
Knowledge bases and software support for variant interpretation in precision oncology. Briefings Bioinform. 22(6) (2021) - [c66]Richard Henkenjohann, Benjamin Bergner, Florian Borchert, Nina Bougatf, Hauke Hund, Roland Eils, Matthieu-P. Schapranow:
An Engineering Approach Towards Multi-site Virtual Molecular Tumor Board Software. IHAW 2021: 156-170 - 2020
- [j55]Soeren Lukassen
, Foo Wei Ten, Lukás Adam
, Roland Eils
, Christian Conrad
:
Gene set inference from single-cell sequencing data using a hybrid of matrix factorization and variational autoencoders. Nat. Mach. Intell. 2(12): 800-809 (2020) - [j54]Moritz Gerstung
, Clemency Jolly, Ignaty Leshchiner, Stefan C. Dentro
, Santiago Gonzalez, Thomas J. Mitchell
, Yulia Rubanova, Pavana Anur, Kaixian Yu, Maxime Tarabichi
, Amit G. Deshwar, Jeff Wintersinger, Kortine Kleinheinz, Ignacio Vázquez-García, Kerstin Haase, Lara Jerman, Subhajit Sengupta, Geoff MacIntyre, Salem Malikic
, Nilgun Donmez, Dimitri G. Livitz
, Marek Cmero, Jonas Demeulemeester
, Steven E. Schumacher, Yu Fan, Xiaotong Yao
, Juhee Lee, Matthias Schlesner, Paul C. Boutros, David D. L. Bowtell, Hongtu Zhu, Gad Getz, Marcin Imielinski, Rameen Beroukhim, Süleyman Cenk Sahinalp, Yuan Ji, Martin Peifer
, Florian Markowetz, Ville Mustonen
, Ke Yuan, Wenyi Wang
, Quaid D. Morris
, David J. Adams
, Peter J. Campbell, Shaolong Cao, Elizabeth L. Christie
, Yupeng Cun, Kevin J. Dawson, Ruben M. Drews, Roland Eils
, Matthew Fittall
, Dale W. Garsed
, Gavin Ha, Henry Lee-Six, Iñigo Martincorena, Layla Oesper, Myron Peto, Benjamin J. Raphael, Daniel T. Rosebrock
, Adriana Salcedo, Ruian Shi, Seung Jun Shin, Oliver Spiro, Lincoln D. Stein, Shankar Vembu, David A. Wheeler, Tsun-Po Yang, Paul T. Spellman, David C. Wedge
, Peter Van Loo:
The evolutionary history of 2,658 cancers. Nat. 578(7793): 122-128 (2020) - [c65]Inken Hagestedt, Mathias Humbert, Pascal Berrang, Irina Lehmann, Roland Eils, Michael Backes, Yang Zhang:
Membership Inference Against DNA Methylation Databases. EuroS&P 2020: 509-520 - [c64]Cecilia Mascia
, Francesca Frexia
, Paolo Uva
, Gianluigi Zanetti, Luca Pireddu
, Gideon Giacomelli, Christina Jaeger-Schmidt, Aurelie Tomczak, Simon Schumacher, Florian Kraecher, Roland Eils
, Silje Ljosland Bakke, Heather Leslie
:
The openEHR Genomics Project. MIE 2020: 443-447
2010 – 2019
- 2019
- [j53]Julius Upmeier zu Belzen
, Thore Bürgel
, Stefan Holderbach
, Felix Bubeck, Lukás Adam, Catharina Gandor, Marita Klein, Jan Mathony
, Pauline Pfuderer, Lukas Platz
, Moritz Przybilla, Max Schwendemann, Daniel Heid
, Mareike Daniela Hoffmann
, Michael Jendrusch
, Carolin Schmelas
, Max Waldhauer, Irina Lehmann
, Dominik Niopek
, Roland Eils:
Leveraging implicit knowledge in neural networks for functional dissection and engineering of proteins. Nat. Mach. Intell. 1(5): 225-235 (2019) - [j52]Julius Upmeier zu Belzen
, Thore Bürgel
, Stefan Holderbach
, Felix Bubeck, Lukás Adam, Catharina Gandor, Marita Klein, Jan Mathony, Pauline Pfuderer, Lukas Platz, Moritz Przybilla, Max Schwendemann, Daniel Heid, Mareike Daniela Hoffmann, Michael Jendrusch
, Carolin Schmelas, Max Waldhauer, Irina Lehmann
, Dominik Niopek
, Roland Eils:
Publisher Correction: Leveraging implicit knowledge in neural networks for functional dissection and engineering of proteins. Nat. Mach. Intell. 1(6): 290 (2019) - 2018
- [j51]Gue-Ho Hwang, Jeongbin Park
, Kayeong Lim, Sunghyun Kim, Jihyeon Yu
, Eunchong Yu, Sang-Tae Kim
, Roland Eils
, Jin-Soo Kim
, Sangsu Bae
:
Web-based design and analysis tools for CRISPR base editing. BMC Bioinform. 19(1): 542:1-542:7 (2018) - [j50]Mihai Glont
, Tung V. N. Nguyen
, Martin Graesslin, Robert Hälke, Raza Ali, Jochen Schramm, Sarala M. Wimalaratne
, Varun B. Kothamachu
, Nicolas Rodriguez, Maciej J. Swat, Jurgen Eils, Roland Eils
, Camille Laibe
, Rahuman S. Malik-Sheriff
, Vijayalakshmi Chelliah, Nicolas Le Novère, Henning Hermjakob
:
BioModels: expanding horizons to include more modelling approaches and formats. Nucleic Acids Res. 46(Database-Issue): D1248-D1253 (2018) - [j49]Sharib Ali
, Stefan Wörz, Katrin Amunts
, Roland Eils
, Markus Axer
, Karl Rohr:
Rigid and non-rigid registration of polarized light imaging data for 3D reconstruction of the temporal lobe of the human brain at micrometer resolution. NeuroImage 181: 235-251 (2018) - [c63]Pascal Berrang, Mathias Humbert, Yang Zhang, Irina Lehmann, Roland Eils, Michael Backes:
Dissecting Privacy Risks in Biomedical Data. EuroS&P 2018: 62-76 - [c62]Sharib Ali
, Markus Axer
, Katrin Amunts, Roland Eils, Karl Rohr:
Evaluating local features in high-resolution 3D-PLI data. ISBI 2018: 729-733 - [c61]Sharib Ali
, Katrin Amunts, Roland Eils, Markus Axer
, Karl Rohr:
Scale-bundle spline-based non-rigid registration for handling fissures. ISBI 2018: 762-765 - 2017
- [j48]Stefan M. Kallenberger, Anne L. Unger, Stefan Legewie
, Konstantinos Lymperopoulos, Ursula Klingmüller
, Roland Eils
, Dirk-Peter Herten
:
Correlated receptor transport processes buffer single-cell heterogeneity. PLoS Comput. Biol. 13(9) (2017) - [c60]Sharib Ali
, Karl Rohr, David Gräßel, Philipp Schlömer, Katrin Amunts, Roland Eils, Markus Axer
, Stefan Wörz:
Spline-Based Multimodal Image Registration of 3D PLI Data of the Human Brain. Bildverarbeitung für die Medizin 2017: 268-273 - [c59]Sharib Ali
, Karl Rohr, Markus Axer
, Katrin Amunts, Roland Eils, Stefan Wörz:
Registration of ultra-high resolution 3D PLI data of human brain sections to their corresponding high-resolution counterpart. ISBI 2017: 415-419 - [c58]Sharib Ali
, Karl Rohr, Markus Axer
, David Gräßel, Philipp Schlömer, Katrin Amunts, Roland Eils, Stefan Wörz:
Elastic registration of high-resolution 3D PLI data of the human brain. ISBI 2017: 1151-1155 - [c57]Michael Backes, Pascal Berrang, Matthias Bieg, Roland Eils, Carl Herrmann
, Mathias Humbert, Irina Lehmann:
Identifying Personal DNA Methylation Profiles by Genotype Inference. IEEE Symposium on Security and Privacy 2017: 957-976 - 2016
- [j47]Sebastian Steinhauser, Nils Kurzawa
, Roland Eils
, Carl Herrmann
:
A comprehensive comparison of tools for differential ChIP-seq analysis. Briefings Bioinform. 17(6): 953-966 (2016) - [j46]Zuguang Gu
, Roland Eils
, Matthias Schlesner
:
HilbertCurve: an R/Bioconductor package for high-resolution visualization of genomic data. Bioinform. 32(15): 2372-2374 (2016) - [j45]Zuguang Gu
, Roland Eils
, Matthias Schlesner
:
Complex heatmaps reveal patterns and correlations in multidimensional genomic data. Bioinform. 32(18): 2847-2849 (2016) - [j44]Zuguang Gu
, Roland Eils
, Matthias Schlesner
:
gtrellis: an R/Bioconductor package for making genome-level Trellis graphics. BMC Bioinform. 17: 169 (2016) - [j43]Charles Y. Lin, Serap Erkek
, Yiai Tong, Linlin Yin, Alexander J. Federation
, Marc Zapatka
, Parthiv Haldipur
, Daisuke Kawauchi, Thomas Risch, Hans-Jörg Warnatz, Barbara C. Worst, Bensheng Ju, Brent A. Orr
, Rhamy Zeid, Donald R. Polaski, Maia Segura-Wang
, Sebastian M. Waszak
, David T. W. Jones
, Marcel Kool, Volker Hovestadt
, Ivo Buchhalter
, Laura Sieber, Pascal Johann, Lukas Chavez
, Stefan Gröschel, Marina Ryzhova
, Andrey Korshunov
, Wenbiao Chen, Victor V. Chizhikov
, Kathleen J. Millen
, Vyacheslav Amstislavskiy, Hans Lehrach, Marie-Laure Yaspo, Roland Eils
, Peter Lichter, Jan O. Korbel, Stefan M. Pfister
, James E. Bradner, Paul A. Northcott
:
Active medulloblastoma enhancers reveal subgroup-specific cellular origins. Nat. 530(7588): 57-62 (2016) - 2015
- [j42]Evgeny Gladilin, Roland Eils
:
On the role of spatial phase and phase correlation in vision, illusion, and cognition. Frontiers Comput. Neurosci. 9: 45 (2015) - [j41]Marco Tektonidis, Il-Han Kim, Yi-Chun Chen, Roland Eils
, David L. Spector, Karl Rohr:
Non-rigid multi-frame registration of cell nuclei in live cell fluorescence microscopy image data. Medical Image Anal. 19(1): 1-14 (2015) - [j40]Nicholas Nolte, Nils Kurzawa
, Roland Eils
, Carl Herrmann
:
MapMyFlu: visualizing spatio-temporal relationships between related influenza sequences. Nucleic Acids Res. 43(Webserver-Issue): W547-W551 (2015) - [j39]Astha Jaiswal, William J. Godinez
, Roland Eils
, Maik Jörg Lehmann, Karl Rohr:
Tracking Virus Particles in Fluorescence Microscopy Images Using Multi-Scale Detection and Multi-Frame Association. IEEE Trans. Image Process. 24(11): 4122-4136 (2015) - 2014
- [j38]Theresa Schacht, Marcus Oswald, Roland Eils
, Stefan B. Eichmüller
, Rainer König:
Estimating the activity of transcription factors by the effect on their target genes. Bioinform. 30(17): 401-407 (2014) - [j37]Zuguang Gu
, Lei Gu, Roland Eils
, Matthias Schlesner
, Benedikt Brors
:
circlize implements and enhances circular visualization in R. Bioinform. 30(19): 2811-2812 (2014) - [j36]Rosario M. Piro
, Stefan Wiesberg, Gunnar Schramm, Nico Rebel, Marcus Oswald, Roland Eils
, Gerhard Reinelt, Rainer König:
Network topology-based detection of differential gene regulation and regulatory switches in cell metabolism and signaling. BMC Syst. Biol. 8: 56 (2014) - [j35]Marti Bernardo-Faura
, Stefan Massen, Christine S. Falk
, Nathan R. Brady, Roland Eils
:
Data-Derived Modeling Characterizes Plasticity of MAPK Signaling in Melanoma. PLoS Comput. Biol. 10(9) (2014) - [j34]Apichat Suratanee
, Martin H. Schaefer
, Matthew J. Betts
, Zita Soons
, Heiko A. Mannsperger, Nathalie Harder
, Marcus Oswald, Markus Gipp, Ellen Ramminger, Guillermo Marcus Martinez
, Reinhard Männer, Karl Rohr, Erich E. Wanker
, Robert B. Russell
, Miguel A. Andrade-Navarro, Roland Eils
, Rainer König:
Characterizing Protein Interactions Employing a Genome-Wide siRNA Cellular Phenotyping Screen. PLoS Comput. Biol. 10(9) (2014) - 2013
- [j33]Rosario M. Piro
, Ivan Molineris
, Ferdinando Di Cunto
, Roland Eils
, Rainer König:
Disease-gene discovery by integration of 3D gene expression and transcription factor binding affinities. Bioinform. 29(4): 468-475 (2013) - [j32]Moritz Aschoff, Agnes Hotz-Wagenblatt, Karl-Heinz Glatting, Matthias Fischer, Roland Eils
, Rainer König:
SplicingCompass: differential splicing detection using RNA-Seq data. Bioinform. 29(9): 1141-1148 (2013) - [j31]Ujjwal Maulik
, Anirban Mukhopadhyay
, Malay Bhattacharyya
, Lars Kaderali
, Benedikt Brors
, Sanghamitra Bandyopadhyay, Roland Eils
:
Mining Quasi-Bicliques from HIV-1-Human Protein Interaction Network: A Multiobjective Biclustering Approach. IEEE ACM Trans. Comput. Biol. Bioinform. 10(2): 423-435 (2013) - 2012
- [j30]William J. Godinez
, Marko Lampe
, Peter Koch, Roland Eils
, Barbara Müller
, Karl Rohr:
Identifying Virus-Cell Fusion in Two-Channel Fluorescence Microscopy Image Sequences Based on a Layered Probabilistic Approach. IEEE Trans. Medical Imaging 31(9): 1786-1808 (2012) - [c56]Astha Jaiswal, William J. Godinez, Roland Eils, Maik Jörg Lehmann, Karl Rohr:
Tracking Virus Particles in Microscopy Images Using Multi-Frame Association. Bildverarbeitung für die Medizin 2012: 231-236 - [c55]Nathalie Harder, Richa Batra, Sina Gogolin, Nicolle Diessl, Roland Eils, Frank Westermann, Rainer König, Karl Rohr:
Cell Tracking for Automatic Migration and Proliferation Analysis in High-Throughput Screens. Bildverarbeitung für die Medizin 2012: 243-248 - [c54]Astha Jaiswal, William J. Godinez, Roland Eils
, Maik Jörg Lehmann, Karl Rohr:
Tracking virus particles in fluorescence microscopy images using two-step multi-frame association. ISBI 2012: 664-667 - 2011
- [j29]Tobias Bauer
, Roland Eils
, Rainer König:
RIP: the regulatory interaction predictor - a machine learning-based approach for predicting target genes of transcription factors. Bioinform. 27(16): 2239-2247 (2011) - [j28]Bettina Knapp, Ilka Rebhan, Anil Kumar
, Petr Matula
, Narsis Aftab Kiani
, Marco Binder
, Holger Erfle, Karl Rohr, Roland Eils
, Ralf Bartenschlager
, Lars Kaderali
:
Normalizing for individual cell population context in the analysis of high-content cellular screens. BMC Bioinform. 12: 485 (2011) - [j27]Il-Han Kim, Yi-Chun Chen, David L. Spector, Roland Eils
, Karl Rohr:
Nonrigid Registration of 2-D and 3-D Dynamic Cell Nuclei Images for Improved Classification of Subcellular Particle Motion. IEEE Trans. Image Process. 20(4): 1011-1022 (2011) - [c53]Navid Bazzazzadeh, Benedikt Brors, Roland Eils:
Reconstructing the Stochastic Evolution Diagram of Dynamic Complex Systems. AAAI 2011: 1760-1761 - [c52]Nathalie Harder, Megan Bodnar, Roland Eils, David L. Spector, Karl Rohr:
3D Segmentation and Quantification of Mouse Embryonic Stem Cells in Fluorescence Microscopy Images. Bildverarbeitung für die Medizin 2011: 34-38 - [c51]Navid Bazzazzadeh, Benedikt Brors, Roland Eils:
Reconstructing evolutionary modular networks from time series data. FUSION 2011: 1-8 - [c50]Il-Han Kim, Catharina Cadmus, Andrea C. Pfeifer, Ursula Klingmüller, Roland Eils
, Karl Rohr:
Quantification of frap experiments in live cell image sequences by combining segmentation and registration. ISBI 2011: 212-215 - [c49]Nathalie Harder, Megan Bodnar, Roland Eils
, David L. Spector, Karl Rohr:
3D segmentation and quantification of mouse embryonic stem cells in fluorescence microscopy images. ISBI 2011: 216-219 - [c48]William J. Godinez, Marko Lampe
, Roland Eils
, Barbara Müller, Karl Rohr:
Tracking multiple particles in fluorescence microscopy images via probabilistic data association. ISBI 2011: 1925-1928 - 2010
- [j26]Gunnar Schramm, Stefan Wiesberg, Nicolle Diessl, Anna-Lena Kranz, Vitalia Sagulenko, Marcus Oswald, Gerhard Reinelt, Frank Westermann, Roland Eils
, Rainer König:
PathWave: discovering patterns of differentially regulated enzymes in metabolic pathways. Bioinform. 26(9): 1225-1231 (2010) - [j25]Apichat Suratanee
, Ilka Rebhan, Petr Matula
, Anil Kumar
, Lars Kaderali
, Karl Rohr, Ralf Bartenschlager
, Roland Eils
, Rainer König:
Detecting host factors involved in virus infection by observing the clustering of infected cells in siRNA screening images. Bioinform. 26(18) (2010) - [j24]Svetlana Bulashevska, Alla Bulashevska, Roland Eils
:
Bayesian statistical modelling of human protein interaction network incorporating protein disorder information. BMC Bioinform. 11: 46 (2010) - [j23]Kitiporn Plaimas
, Roland Eils
, Rainer König:
Identifying essential genes in bacterial metabolic networks with machine learning methods. BMC Syst. Biol. 4: 56 (2010) - [c47]Nathalie Harder, Felipe Mora-Bermúdez, William J. Godinez, Annelie Wünsche, Jan Ellenberg, Roland Eils, Karl Rohr:
Automatic Analysis of Live Cell Image Sequences to determine Temporal Mitotic Phenotypes. Bildverarbeitung für die Medizin 2010: 81-85
2000 – 2009
- 2009
- [j22]Nora Rieber, Bettina Knapp, Roland Eils
, Lars Kaderali
:
RNAither, an automated pipeline for the statistical analysis of high-throughput RNAi screens. Bioinform. 25(5): 678-679 (2009) - [j21]Alla Bulashevska, Martin Stein, David Jackson
, Roland Eils
:
Prediction of small molecule binding property of protein domains with Bayesian classifiers based on Markov chains. Comput. Biol. Chem. 33(6): 457-460 (2009) - [j20]William J. Godinez
, Marko Lampe
, Stefan Wörz, Barbara Müller
, Roland Eils
, Karl Rohr:
Deterministic and probabilistic approaches for tracking virus particles in time-lapse fluorescence microscopy image sequences. Medical Image Anal. 13(2): 325-342 (2009) - [j19]Samuel Bandara, Johannes P. Schlöder, Roland Eils
, Hans Georg Bock, Tobias Meyer
:
Optimal Experimental Design for Parameter Estimation of a Cell Signaling Model. PLoS Comput. Biol. 5(11) (2009) - [c46]William J. Godinez, Marko Lampe
, Stefan Wörz, Barbara Müller, Roland Eils, Karl Rohr:
Evaluation of Approaches for Tracking Virus Particles in Fluorescence Microscopy Images. Bildverarbeitung für die Medizin 2009: 207-211 - [c45]William J. Godinez, Marko Lampe
, Stefan Wörz, Roland Eils
, Barbara Müller, Karl Rohr:
Identifying Fusion Events in Fluorescence Microscopy Images. ISBI 2009: 1167-1170 - [c44]Eva-Maria Surmann, Gunnar Schramm, Stefan Wiesberg, Marcus Oswald, Gerhard Reinelt, Roland Eils, Rainer König:
Analyzing the regulation of metabolic pathways in human breast cancer. LWA 2009: KDML:111-118 - [c43]Evgeny Gladilin, Roland Eils
:
Detection of non-uniform multi-body motion in image time-series using saccades-enhanced phase correlation. Medical Imaging: Image Processing 2009: 72592D - 2008
- [j18]Jan T. Kim, Roland Eils
:
Systems Biology and Artificial Life: Towards Predictive Modeling of Biological Systems. Artif. Life 14(1): 1-2 (2008) - [j17]Hannah Schmidt-Glenewinkel, Ivayla Vacheva, Daniela Hoeller, Ivan Dikic
, Roland Eils
:
An ultrasensitive sorting mechanism for EGF Receptor Endocytosis. BMC Syst. Biol. 2: 32 (2008) - [j16]Kitiporn Plaimas
, Jan-Phillip Mallm
, Marcus Oswald, Fabian Svara, Victor Sourjik, Roland Eils
, Rainer König:
Machine learning based analyses on metabolic networks supports high-throughput knockout screens. BMC Syst. Biol. 2: 67 (2008) - [j15]Siwei Yang, Daniela Köhler, Kathrin Teller, Thomas Cremer, Patricia Le Baccon, Edith Heard, Roland Eils
, Karl Rohr:
Nonrigid Registration of 3-D Multichannel Microscopy Images of Cell Nuclei. IEEE Trans. Image Process. 17(4): 493-499 (2008) - [c42]William J. Godinez, Marko Lampe
, Stefan Wörz, Barbara Müller, Roland Eils, Karl Rohr:
Probabilistic Tracking of Virus Particles in Fluorescence Microscopy Image Sequences. Bildverarbeitung für die Medizin 2008: 448-452 - [c41]Petr Matula, Anil Kumar, Ilka Wörz, Nathalie Harder, Holger Erfle, Ralf Bartenschlager, Roland Eils
, Karl Rohr:
Automated Analysis of siRNA Screens of Virus Infected Cells Based on Immunofluorescence Microscopy. Bildverarbeitung für die Medizin 2008: 453-457 - [c40]William J. Godinez, Marko Lampe
, Stefan Wörz, Barbara Müller, Roland Eils, Karl Rohr:
Probabilistic tracking of virus particles in fluorescence microscopy images. ISBI 2008: 272-275 - [c39]Evgeny Gladilin, Roland Eils
:
Nonlinear elastic model for image registration and soft tissue simulation based on piecewise St. Venant-Kirchhoff material approximation. Medical Imaging: Image Processing 2008: 69142O - 2007
- [j14]Gunnar Schramm, Marc Zapatka
, Roland Eils
, Rainer König:
Using gene expression data and network topology to detect substantial pathways, clusters and switches during oxygen deprivation of Escherichia coli. BMC Bioinform. 8 (2007) - [c38]William J. Godinez, Marko Lampe
, Stefan Wörz, Barbara Müller, Roland Eils, Karl Rohr:
Tracking of Virus Particles in Time-Lapse Fluorescence Microscopy Image Sequences. Bildverarbeitung für die Medizin 2007: 6-10 - [c37]Il-Han Kim, Siwei Yang, Patricia Le Baccon, Edith Heard, Constantin Kappel, Roland Eils, Karl Rohr:
Non-rigid Temporal Alignment of 2D and 3D Multi-channel Microscopy Image Sequences of Human Cells. Bildverarbeitung für die Medizin 2007: 16-20 - [c36]Evgeny Gladilin, Karl Rohr, Roland Eils:
On Validation of Non-physical Techniques for Elastic Image Registration. Bildverarbeitung für die Medizin 2007: 111-115 - [c35]Nathalie Harder, Felipe Mora-Bermúdez, William J. Godinez, Jan Ellenberg, Roland Eils, Karl Rohr:
Determination of Mitotic Delays in 3D Fluorescence Microscopy Images of Human Cells Using an Error-Correcting Finite State Machine. Bildverarbeitung für die Medizin 2007: 242-246 - [c34]Evgeny Gladilin, Sandra Götze, Jose Mateos-Langerak, Roel van Driel, Karl Rohr, Roland Eils:
Stochastical Analysis of Finite Point Sampling of 3D Chromatin Fiber in Interphase Cell Nuclei. BIRD 2007: 104-118 - [c33]Evgeny Gladilin, Sandra Götze, Jose Mateos-Langerak, Roel van Driel, Karl Rohr, Roland Eils:
Geometrical probability approach for analysis of 3D chromatin structure in interphase cell nuclei. CIBCB 2007: 127-134 - [c32]Siwei Yang, Sandra Götze, Julio Mateos-Langerak
, Roel van Driel, Roland Eils, Karl Rohr:
Analyzing the Variability of the 3D Structure of Chromatin Fiber Using Statistical Shape Theory. DAGM-Symposium 2007: 497-506 - [c31]William J. Godinez, Marko Lampe
, Stefan Wörz, Barbara Müller, Roland Eils
, Karl Rohr:
Tracking of Virus Particles in Time-Lapse Fluorescence Microscopy Image Sequences. ISBI 2007: 256-259 - [c30]Nathalie Harder, Felipe Mora-Bermúdez, William J. Godinez, Jan Ellenberg, Roland Eils
, Karl Rohr:
Determination of Mitotic Delays in 3d Fluorescence Microscopy Images of Human Cells Using an Error-Correcting Finite State Machine. ISBI 2007: 1044-1047 - [c29]Il-Han Kim, Siwei Yang, Patricia Le Baccon, Edith Heard, Yi-Chun Chen, David L. Spector, Constantin Kappel, Roland Eils, Karl Rohr:
Non-Rigid Temporal Registration of 2d and 3d Multi-Channel Microscopy Image Sequences of Human Cells. ISBI 2007: 1328-1331 - [c28]Kitiporn Plaimas, Marcus Oswald, Roland Eils, Rainer König:
Integrating Genomic and Transcriptomic Data into Graph Based Approaches for Defining Essential Reactions in the Metabolic Network of Escherichia Coli. LWA 2007: 55-60 - [c27]Siwei Yang, Sandra Götze, Julio Mateos-Langerak, Roel van Driel, Roland Eils, Karl Rohr:
Variability Analysis of the Large-Scale Structure of Interphase Chromatin Fiber Based on Statistical Shape Theory. MDA 2007: 37-46 - [c26]Evgeny Gladilin, Constantin Kappel, Roland Eils
:
Motion detection and pattern tracking in microscopical images using phase correlation approach. Medical Imaging: Image Processing 2007: 65121V - [c25]Il-Han Kim, William J. Godinez, Nathalie Harder, Felipe Mora-Bermúdez, Jan Ellenberg, Roland Eils
, Karl Rohr:
Compensation of global movement for improved tracking of cells in time-lapse confocal microscopy image sequences. Medical Imaging: Image Processing 2007: 65121R - [c24]Stefan Wörz, Constantin Kappel, Roland Eils
, Karl Rohr:
Model-based segmentation and quantification of fluorescent bacteria in 3D microscopy live cell images. Medical Imaging: Image Processing 2007: 651234 - 2006
- [j13]Theodora Manoli, Norbert Gretz, Hermann-Josef Gröne, Marc Kenzelmann, Roland Eils
, Benedikt Brors
:
Group testing for pathway analysis improves comparability of different microarray datasets. Bioinform. 22(20): 2500-2506 (2006) - [j12]Markus Ulrich, Constantin Kappel, Joël Beaudouin, Stefan Hezel, Jochen Ulrich, Roland Eils
:
Tropical - parameter estimation and simulation of reaction-diffusion models based on spatio-temporal microscopy images. Bioinform. 22(21): 2709-2710 (2006) - [j11]Rainer König, Gunnar Schramm, Marcus Oswald, Hanna Seitz, Sebastian Sager, Marc Zapatka, Gerhard Reinelt, Roland Eils
:
Discovering functional gene expression patterns in the metabolic network of Escherichia coli with wavelets transforms. BMC Bioinform. 7: 119 (2006) - [j10]Arunachalam Vinayagam
, Coral del Val
, Falk Schubert, Roland Eils
, Karl-Heinz Glatting, Sándor Suhai, Rainer König:
GOPET: A tool for automated predictions of Gene Ontology terms. BMC Bioinform. 7: 161 (2006) - [j9]Alla Bulashevska, Roland Eils
:
Predicting protein subcellular locations using hierarchical ensemble of Bayesian classifiers based on Markov chains. BMC Bioinform. 7: 298 (2006) - [j8]Roland Eils, Leo Neumann:
Systems Biology and Information Technology (Systembiologie und Informationstechnologie. it Inf. Technol. 48(3): 131-132 (2006) - [j7]Ivayla Vacheva, Roland Eils:
Computational Systems Biology Platforms (Computergestützte Systembiologieplattformen). it Inf. Technol. 48(3): 140-147 (2006) - [j6]Priyanka Shahi, Serguei Loukianiouk, Andreas Bohne-Lang
, Marc Kenzelmann, Stefan Küffer, Sabine Maertens, Roland Eils
, Hermann-Josef Gröne, Norbert Gretz, Benedikt Brors
:
Argonaute - a database for gene regulation by mammalian microRNAs. Nucleic Acids Res. 34(Database-Issue): 115-118 (2006) - [c23]Siwei Yang, Daniela Köhler, Kathrin Teller, Thomas Cremer, Roland Eils, Karl Rohr:
Non-rigid Registration of 3D Microscopy Images for the Normalization of Different Cell Nuclei. Bildverarbeitung für die Medizin 2006: 364-368 - [c22]Nathalie Harder, Beate Neumann, Michael Held, Urban Liebel, Holger Erfle, Jan Ellenberg, Roland Eils, Karl Rohr:
Automated Analysis of Mitotic Phenotypes in Fluorescence Microscopy Images of Human Cells. Bildverarbeitung für die Medizin 2006: 374-378 - [c21]Evgeny Gladilin, Roland Eils, Karl Rohr:
3D Formnormalisierung von Zellkernen mit Hilfe einer elastischen Kugelabbildung. Bildverarbeitung für die Medizin 2006: 384-388 - [c20]Vassili Kovalev
, Nathalie Harder, Beate Neumann, Michael Held, Urban Liebel, Holger Erfle, Jan Ellenberg, Roland Eils
, Karl Rohr:
Feature Selection for Evaluating Fluorescence Microscopy Images in Genome-Wide Cell Screens. CVPR (1) 2006: 276-283 - [c19]Nathalie Harder, Beate Neumann, Michael Held, Urban Liebel, Holger Erfle, Jan Ellenberg, Roland Eils, Karl Rohr:
Automated recognition of mitotic patterns in fluorescence microscopy images of human cells. ISBI 2006: 1016-1019 - [c18]Julian Mattes, Janna Nawroth, Petra Boukamp, Roland Eils, Karin M. Greulich-Bode:
Analyzing motion and deformation of the cell nucleus for studying co-localizations of nuclear structures. ISBI 2006: 1044-1047 - [c17]Gunnar Schramm, Marcus Oswald, Hanna Seitz, Sebastian Sager, Marc Zapatka, Gerhard Reinelt, Roland Eils, Rainer König:
Pattern recognition of gene expression data on biochemical networks with simple wavelet transforms. LWA 2006: 350-355 - [c16]Nathalie Harder, Felipe Mora-Bermúdez, William J. Godinez
, Jan Ellenberg, Roland Eils
, Karl Rohr:
Automated Analysis of the Mitotic Phases of Human Cells in 3D Fluorescence Microscopy Image Sequences. MICCAI (1) 2006: 840-848 - [c15]Siwei Yang, Daniela Köhler, Kathrin Teller, Thomas Cremer, Patricia Le Baccon, Edith Heard, Roland Eils
, Karl Rohr:
Non-rigid Registration of 3D Multi-channel Microscopy Images of Cell Nuclei. MICCAI (1) 2006: 907-914 - [c14]Evgeny Gladilin, Sandra Götze
, Julio Mateos-Langerak
, Roel van Driel, Roland Eils
, Karl Rohr:
Topological analysis of 3D cell nuclei using finite element template-based spherical mapping. Medical Imaging: Image Processing 2006: 61444V - 2005
- [j5]Svetlana Bulashevska, Roland Eils
:
Inferring genetic regulatory logic from expression data. Bioinform. 21(11): 2706-2713 (2005) - [j4]Falk Schubert, Bernhard Tausch, Stefan Joos, Roland Eils
:
CGH-Profiler: Data mining based on genomic aberration profiles. BMC Bioinform. 6: 188 (2005) - [j3]Patrick Warnat, Roland Eils
, Benedikt Brors
:
Cross-platform analysis of cancer microarray data improves gene expression based classification of phenotypes. BMC Bioinform. 6: 265 (2005) - 2004
- [j2]Rainer König, Roland Eils
:
Gene expression analysis on biochemical networks using the Potts spin model. Bioinform. 20(10): 1500-1505 (2004) - [j1]Arunachalam Vinayagam
, Rainer König, Jutta Moormann, Falk Schubert, Roland Eils
, Karl-Heinz Glatting, Sándor Suhai:
Applying Support Vector Machines for Gene ontology based gene function prediction. BMC Bioinform. 5: 116 (2004) - [c13]Dietmar Volz, Martin Eigel, Chaitanya A. Athale
, Peter Bastian, Harald Hermann, Constantin Kappel, Roland Eils:
Spatial Modeling and Simulation of Diffusion in Nuclei of Living Cells. CMSB 2004: 161-171 - [c12]Martin Bentele, Roland Eils:
General Stochastic Hybrid Method for the Simulation of Chemical Reaction Processes in Cells. CMSB 2004: 248-251 - [c11]Juntao Gao, Roland Eils, Daniela Köhler, Irina Solovei, Thomas Cremer, Julian Mattes:
Assessing The Similarity of Spatial Configurations Using Distance Differences and Bending Energy: Application To Chromosomal Interphase Arrangements In HeLa Cell Clones. ISBI 2004: 1400-1403 - 2003
- [c10]Rainer König, Roland Eils:
Gene expression analysis on biochemical networks with the potts spin model. German Conference on Bioinformatics 2003: 69-72 - [c9]Falk Schubert, Jasmin Müller, Björn Fritz, Peter Lichter, Roland Eils:
Understanding the classification of tumors with a support-vector-machine: A case-based explanation scheme. German Conference on Bioinformatics 2003: 123-127 - 2002
- [c8]Marco Weismueller, Rainer König, Roland Eils:
Modelling of Information Flows in Cells. ESM 2002: 413-417 - [c7]Roland Eils:
Machine Learning Approaches for Deciphering Complex Pathomechanisms in Cancer. GI Jahrestagung (Ergänzungsband) 2002: 63-64 - [c6]Julian Mattes, Johannes Fieres, Roland Eils:
Shape-adapted motion model based on thin-plate splines and point clustering for point set registration. Medical Imaging: Image Processing 2002 - 2001
- [c5]Johannes Fieres, Julian Mattes, Roland Eils:
A Point Set Registration Algorithm Using a Motion Model Based on Thin-Plate Splines and Point Clustering. DAGM-Symposium 2001: 76-83 - [c4]Julian Mattes, Johannes Fieres, Joël Beaudouin, Daniel Gerlich, Jan Ellenberg, Roland Eils:
New Tools for Visualization and Quantification in Dynamic Processes: Application to the Nuclear Envelope Dynamics During Mitosis. MICCAI 2001: 1323-1325 - [c3]Matthias Gebhard, Julian Mattes, Roland Eils:
An Active Contour Model for Segmentation Based on Cubic B-splines and Gradient Vector Flow. MICCAI 2001: 1373-1375
1990 – 1999
- 1996
- [c2]Kurt Sätzler, Cornelius Cremer, Roland Eils:
3D-Bildfolgen zur Auflösungsverbesserung in der Fluoreszenzmikroskopie. DAGM-Symposium 1996: 92-105 - [c1]Harald Bornfleth, Daniele Zink, Kurt Sätzler, Roland Eils, Christoph Cremer:
Modellgestützte Segmentierung von Replikationsdomänen in dreidimensionalen konfokalen Mikroskopiebildern. DAGM-Symposium 1996: 408-419
Coauthor Index
![](https://dblp.dagstuhl.de/img/cog.dark.24x24.png)
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