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Quaid Morris
Person information
- affiliation: Memorial Sloan Kettering Cancer Center, New York City, USA
- affiliation: University of Toronto, Canada
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2020 – today
- 2022
- [j29]Ruian Shi, Haoran Zhang
, Quaid Morris:
PAN-cODE: COVID-19 forecasting using conditional latent ODEs. J. Am. Medical Informatics Assoc. 29(12): 2089-2095 (2022) - [j28]Caitlin Timmons
, Quaid Morris
, Caitlin F. Harrigan
:
Regional mutational signature activities in cancer genomes. PLoS Comput. Biol. 18(12): 1010733 (2022) - [c33]Abdurrahman Elbasir, Ying Ye, Daniel E. Schäffer, Jayamanna Wickramasinghe, Xue Hao, Paul M. Lieberman, Quaid Morris, Rugang Zhang, Alejandro A. Schäffer, Noam Auslander:
Characterizing The Landscape Of Viral Expression In Cancer By Deep Learning. BIBM 2022: 3801-3803 - 2021
- [j27]Linda K. Sundermann
, Jeff Wintersinger
, Gunnar Rätsch, Jens Stoye
, Quaid Morris:
Reconstructing tumor evolutionary histories and clone trees in polynomial-time with SubMARine. PLoS Comput. Biol. 17(1) (2021) - [c32]Haoran Zhang
, Natalie Dullerud, Laleh Seyyed-Kalantari, Quaid Morris, Shalmali Joshi, Marzyeh Ghassemi:
An empirical framework for domain generalization in clinical settings. CHIL 2021: 279-290 - [c31]Ruian Shi, Quaid Morris:
Segmenting Hybrid Trajectories using Latent ODEs. ICML 2021: 9569-9579 - [c30]Haoran Zhang, Quaid Morris, Berk Ustun, Marzyeh Ghassemi:
Learning Optimal Predictive Checklists. NeurIPS 2021: 1215-1229 - [i9]Haoran Zhang, Natalie Dullerud, Laleh Seyyed-Kalantari, Quaid Morris, Shalmali Joshi, Marzyeh Ghassemi:
An Empirical Framework for Domain Generalization in Clinical Settings. CoRR abs/2103.11163 (2021) - [i8]Ruian Shi, Quaid Morris:
Segmenting Hybrid Trajectories using Latent ODEs. CoRR abs/2105.03835 (2021) - [i7]Haoran Zhang, Quaid Morris, Berk Ustun, Marzyeh Ghassemi:
Learning Optimal Predictive Checklists. CoRR abs/2112.01020 (2021) - 2020
- [j26]Moritz Gerstung
, Clemency Jolly, Ignaty Leshchiner, Stefan C. Dentro
, Santiago Gonzalez, Thomas J. Mitchell
, Yulia Rubanova, Pavana Anur, Kaixian Yu, Maxime Tarabichi
, Amit G. Deshwar, Jeff Wintersinger, Kortine Kleinheinz, Ignacio Vázquez-García, Kerstin Haase, Lara Jerman, Subhajit Sengupta, Geoff MacIntyre, Salem Malikic
, Nilgun Donmez, Dimitri G. Livitz
, Marek Cmero, Jonas Demeulemeester
, Steven E. Schumacher, Yu Fan, Xiaotong Yao
, Juhee Lee, Matthias Schlesner, Paul C. Boutros, David D. L. Bowtell, Hongtu Zhu, Gad Getz, Marcin Imielinski, Rameen Beroukhim, Süleyman Cenk Sahinalp, Yuan Ji, Martin Peifer
, Florian Markowetz, Ville Mustonen
, Ke Yuan, Wenyi Wang
, Quaid D. Morris
, David J. Adams
, Peter J. Campbell, Shaolong Cao, Elizabeth L. Christie
, Yupeng Cun, Kevin J. Dawson, Ruben M. Drews, Roland Eils
, Matthew Fittall
, Dale W. Garsed
, Gavin Ha, Henry Lee-Six, Iñigo Martincorena, Layla Oesper, Myron Peto, Benjamin J. Raphael, Daniel T. Rosebrock
, Adriana Salcedo, Ruian Shi, Seung Jun Shin, Oliver Spiro, Lincoln D. Stein, Shankar Vembu, David A. Wheeler, Tsun-Po Yang, Paul T. Spellman, David C. Wedge
, Peter Van Loo:
The evolutionary history of 2,658 cancers. Nat. 578(7793): 122-128 (2020) - [c29]Amir Hosein Khas Ahmadi, Kaveh Hassani, Parsa Moradi, Leo Lee, Quaid Morris:
Memory-Based Graph Networks. ICLR 2020 - [c28]Haoran Zhang, Elisa Candido, Andrew S. Wilton, Raquel Duchen, Liisa Jaakkimainen, Walter P. Wodchis, Quaid Morris:
Identifying Transitional High Cost Users from Unstructured Patient Profiles Written by Primary CarePhysicians. PSB 2020: 127-138 - [c27]Caitlin F. Harrigan, Yulia Rubanova, Quaid Morris, Alina Selega:
TrackSigFreq: Subclonal Reconstructions Based on Mutation Signatures and Allele Frequencies. PSB 2020: 238-249 - [c26]Adamo Young, Jacob Chmura, Yoon-Sik Park, Quaid Morris, Gurnit Atwal:
Genome Gerrymandering: Optimal Division of the Genome into Regions with Cancer Type SpecificDifferences in Mutation Rates. PSB 2020: 274-285 - [i6]Amir Hosein Khas Ahmadi, Kaveh Hassani
, Parsa Moradi, Leo Lee, Quaid Morris:
Memory-Based Graph Networks. CoRR abs/2002.09518 (2020)
2010 – 2019
- 2018
- [j25]Max Franz
, Harold Rodriguez, Christian Tannus Lopes, Khalid Zuberi, Jason Montojo, Gary D. Bader, Quaid Morris
:
GeneMANIA update 2018. Nucleic Acids Res. 46(Webserver-Issue): W60-W64 (2018) - [c25]Yulia Rubanova, Ruian Shi, Roujia Li, Jeff Wintersinger, Amit G. Deshwar, Nil Sahin, Quaid Morris:
Reconstructing evolutionary trajectories of mutations in cancer. ICLR (Workshop) 2018 - 2017
- [c24]Chris Cremer, Quaid Morris, David Duvenaud:
Reinterpreting Importance-Weighted Autoencoders. ICLR (Workshop) 2017 - 2016
- [c23]Drena Dobbs, Steven E. Brenner, Vasant G. Honavar, Robert L. Jernigan, Alain Laederach, Quaid Morris:
Session Introduction. PSB 2016: 429-432 - 2015
- [j24]James Vlasblom, Khalid Zuberi, Harold Rodriguez, Roland Arnold
, Alla Gagarinova, Viktor Deineko, Ashwani Kumar, Elisa Leung, Kamran Rizzolo
, Bahram Samanfar, Luke Chang, Sadhna Phanse
, Ashkan Golshani
, Jack Greenblatt, Walid A. Houry, Andrew Emili, Quaid Morris
, Gary D. Bader
, Mohan Babu
:
Novel function discovery with GeneMANIA: a new integrated resource for gene function prediction in Escherichia coli. Bioinform. 31(3): 306-310 (2015) - [j23]Catalina V. Anghel
, Gerald T. Quon
, Syed Haider, Francis Nguyen
, Amit G. Deshwar, Quaid Morris
, Paul C. Boutros
:
ISOpureR: an R implementation of a computational purification algorithm of mixed tumour profiles. BMC Bioinform. 16: 156:1-156:11 (2015) - [c22]Amit G. Deshwar, Shankar Vembu, Quaid Morris:
Comparing Nonparametric Bayesian Tree Priors for Clonal Reconstruction of Tumors. Pacific Symposium on Biocomputing 2015: 20-31 - 2014
- [j22]Amit G. Deshwar, Quaid Morris
:
PLIDA: cross-platform gene expression normalization using perturbed topic models. Bioinform. 30(7): 956-961 (2014) - [j21]Wei Jiao, Shankar Vembu, Amit G. Deshwar, Lincoln Stein, Quaid Morris
:
Inferring clonal evolution of tumors from single nucleotide somatic mutations. BMC Bioinform. 15: 35 (2014) - [c21]Jennifer Listgarten, Oliver Stegle, Quaid Morris, Steven E. Brenner, Leopold Parts:
Session introduction. Pacific Symposium on Biocomputing 2014: 247-249 - [c20]Shankar Vembu, Quaid Morris:
An Efficient Algorithm to Integrate Network and Attribute Data for Gene Function Prediction. Pacific Symposium on Biocomputing 2014: 388-399 - [i5]Amit G. Deshwar, Shankar Vembu, Christina K. Yung, Gun Ho Jang, Lincoln Stein, Quaid Morris:
Reconstructing subclonal composition and evolution from whole genome sequencing of tumors. CoRR abs/1406.7250 (2014) - [i4]Amit G. Deshwar, Shankar Vembu, Quaid Morris:
Comparing Nonparametric Bayesian Tree Priors for Clonal Reconstruction of Tumors. CoRR abs/1408.2552 (2014) - 2013
- [j20]Khalid Zuberi, Max Franz
, Harold Rodriguez, Jason Montojo, Christian Tannus Lopes, Gary D. Bader
, Quaid Morris
:
GeneMANIA Prediction Server 2013 Update. Nucleic Acids Res. 41(Webserver-Issue): 115-122 (2013) - [j19]Hilal Kazan, Quaid Morris
:
RBPmotif: a web server for the discovery of sequence and structure preferences of RNA-binding proteins. Nucleic Acids Res. 41(Webserver-Issue): 180-186 (2013) - [j18]Debashish Ray, Hilal Kazan, Kate B. Cook, Matthew T. Weirauch, Hamed S. Najafabadi
, Xiao Li, Serge Gueroussov, Mihai Albu, Hong Zheng, Ally Yang, Hong Na, Manuel Irimia
, Leah H. Matzat, Ryan K. Dale
, Sarah A. Smith, Christopher A. Yarosh, Seth M. Kelly, Behnam Nabet
, Desirea Mecenas, Weimin Li
, Rakesh S. Laishram
, Mei Qiao, Howard D. Lipshitz
, Fabio Piano, Anita H. Corbett, Russ P. Carstens
, Brendan J. Frey, Richard A. Anderson
, Kristen W. Lynch, Luiz O. F. Penalva
, Elissa P. Lei
, Andrew G. Fraser
, Benjamin J. Blencowe, Quaid Morris
, Timothy R. Hughes:
A compendium of RNA-binding motifs for decoding gene regulation. Nat. 499(7457): 172-177 (2013) - [c19]Oliver Stegle, Steven E. Brenner, Quaid Morris, Jennifer Listgarten:
Session introduction. Pacific Symposium on Biocomputing 2013: 171-174 - [c18]Quaid Morris, Steven E. Brenner, Jennifer Listgarten, Oliver Stegle:
The Future of Genome-Based Medicine. Pacific Symposium on Biocomputing 2013: 456-458 - [i3]Quaid Morris:
Recognition Networks for Approximate Inference in BN20 Networks. CoRR abs/1301.2295 (2013) - 2012
- [j17]Mohammed Alshalalfa, Gary D. Bader
, Anna Goldenberg, Quaid Morris
, Reda Alhajj:
Detecting microRNAs of high influence on protein functional interaction networks: a prostate cancer case study. BMC Syst. Biol. 6: 112 (2012) - [j16]Wenlian Qiao, Gerald T. Quon
, Elizabeth Csaszar, Mei Yu, Quaid Morris
, Peter W. Zandstra:
PERT: A Method for Expression Deconvolution of Human Blood Samples from Varied Microenvironmental and Developmental Conditions. PLoS Comput. Biol. 8(12) (2012) - [c17]Oliver Stegle, Frederick P. Roth, Quaid Morris, Jennifer Listgarten:
Session introduction. Pacific Symposium on Biocomputing 2012: 323-326 - [c16]David Warde-Farley, Michael Brudno, Quaid Morris, Anna Goldenberg:
Mixture Model for Sub-Phenotyping in GWAS. Pacific Symposium on Biocomputing 2012: 363-374 - [i2]Sara Mostafavi, Quaid Morris:
Using the Gene Ontology Hierarchy when Predicting Gene Function. CoRR abs/1205.2622 (2012) - [i1]Wei Jiao, Shankar Vembu, Amit G. Deshwar, Lincoln Stein, Quaid Morris:
Modeling the Clonal Evolution of Cancer from Next Generation Sequencing Data. CoRR abs/1210.3384 (2012) - 2011
- [j15]Anna Goldenberg, Sara Mostafavi, Gerald T. Quon
, Paul C. Boutros
, Quaid Morris
:
Unsupervised detection of genes of influence in lung cancer using biological networks. Bioinform. 27(22): 3166-3172 (2011) - [j14]Amit G. Deshwar, Gerald T. Quon
, Quaid Morris:
Computational purification of tumor gene expression data. BMC Bioinform. 12(S-11): A9 (2011) - [j13]Kate B. Cook, Hilal Kazan, Khalid Zuberi, Quaid Morris
, Timothy R. Hughes:
RBPDB: a database of RNA-binding specificities. Nucleic Acids Res. 39(Database-Issue): 301-308 (2011) - 2010
- [j12]Sara Mostafavi, Quaid Morris
:
Fast integration of heterogeneous data sources for predicting gene function with limited annotation. Bioinform. 26(14): 1759-1765 (2010) - [j11]Christian Tannus Lopes, Max Franz
, Farzana Kazi, Sylva L. Donaldson, Quaid Morris
, Gary D. Bader
:
Cytoscape Web: an interactive web-based network browser. Bioinform. 26(18): 2347-2348 (2010) - [j10]Jason Montojo, Khalid Zuberi, Harold Rodriguez, Farzana Kazi, George Wright, Sylva L. Donaldson, Quaid Morris
, Gary D. Bader
:
GeneMANIA Cytoscape plugin: fast gene function predictions on the desktop. Bioinform. 26(22): 2927-2928 (2010) - [j9]David Warde-Farley, Sylva L. Donaldson, Ovi Comes, Khalid Zuberi, Rashad Badrawi, Pauline Chao, Max Franz
, Chris Grouios, Farzana Kazi, Christian Tannus Lopes, Anson Maitland, Sara Mostafavi, Jason Montojo, Quentin Shao, George Wright, Gary D. Bader
, Quaid Morris
:
The GeneMANIA prediction server: biological network integration for gene prioritization and predicting gene function. Nucleic Acids Res. 38(Web-Server-Issue): 214-220 (2010) - [j8]Hilal Kazan, Debashish Ray, Esther T. Chan
, Timothy R. Hughes, Quaid Morris
:
RNAcontext: A New Method for Learning the Sequence and Structure Binding Preferences of RNA-Binding Proteins. PLoS Comput. Biol. 6(7) (2010)
2000 – 2009
- 2009
- [j7]Trevis M. Alleyne, Lourdes Peña Castillo
, Gwenael Badis
, Shaheynoor Talukder, Michael F. Berger, Andrew R. Gehrke, Anthony A. Philippakis, Martha L. Bulyk, Quaid Morris
, Timothy R. Hughes:
Predicting the binding preference of transcription factors to individual DNA k-mers. Bioinform. 25(8): 1012-1018 (2009) - [j6]Gerald T. Quon
, Quaid Morris
:
ISOLATE: a computational strategy for identifying the primary origin of cancers using high-throughput sequencing. Bioinform. 25(21): 2882-2889 (2009) - [c15]Benjamin J. Blencowe, Steven E. Brenner, Timothy R. Hughes, Quaid Morris:
Post-Transcriptional Gene Regulation: RNA-Protein Interactions, RNA Processing, mRNA Stability and Localization. Pacific Symposium on Biocomputing 2009: 545-548 - [c14]Sara Mostafavi, Quaid Morris:
Using the Gene Ontology Hierarchy when Predicting Gene Function. UAI 2009: 419-427 - 2008
- [j5]Emad A. M. Andrews, Quaid Morris
, Anthony J. Bonner:
Neural networks approaches for discovering the learnable correlation between gene function and gene expression in mouse. Neurocomputing 71(16-18): 3168-3175 (2008) - [c13]Gerald T. Quon, Yee Whye Teh, Esther T. Chan, Timothy R. Hughes, Michael Brudno, Quaid Morris:
A mixture model for the evolution of gene expression in non-homogeneous datasets. NIPS 2008: 1297-1304 - [c12]Jim C. Huang, Brendan J. Frey, Quaid Morris:
Comparing Sequence and Expression for Predicting microRNA Targets Using GenMIR3. Pacific Symposium on Biocomputing 2008: 52-63 - 2007
- [j4]Gal Chechik, Christina S. Leslie, William Stafford Noble, Gunnar Rätsch
, Quaid Morris
, Koji Tsuda:
NIPS workshop on New Problems and Methods in Computational Biology. BMC Bioinform. 8(S-10) (2007) - [j3]Jim C. Huang, Quaid Morris
, Brendan J. Frey:
Bayesian Inference of MicroRNA Targets from Sequence and Expression Data. J. Comput. Biol. 14(5): 550-563 (2007) - [c11]Xiaoyu Chen, Timothy R. Hughes, Quaid Morris
:
RankMotif++: a motif-search algorithm that accounts for relative ranks of K-mers in binding transcription factors. ISMB/ECCB (Supplement of Bioinformatics) 2007: 72-79 - 2006
- [j2]Ofer Shai, Quaid Morris
, Benjamin J. Blencowe, Brendan J. Frey:
Inferring global levels of alternative splicing isoforms using a generative model of microarray data. Bioinform. 22(5): 606-613 (2006) - [j1]Brendan J. Frey, Quaid Morris
, Timothy R. Hughes:
GenRate: A Generative Model that Reveals Novel Transcripts in Genome-Tiling Microarray Data. J. Comput. Biol. 13(2): 200-214 (2006) - [c10]Emad A. M. Andrews Shenouda, Quaid Morris, Anthony J. Bonner:
Connectionist Approaches for Predicting Mouse Gene Function from Gene Expression. ICONIP (1) 2006: 280-289 - [c9]Jim C. Huang, Quaid Morris, Brendan J. Frey:
Detecting MicroRNA Targets by Linking Sequence, MicroRNA and Gene Expression Data. RECOMB 2006: 114-129 - 2005
- [c8]Delbert Dueck, Quaid Morris
, Brendan J. Frey:
Multi-way clustering of microarray data using probabilistic sparse matrix factorization. ISMB (Supplement of Bioinformatics) 2005: 144-151 - [c7]Jim C. Huang, Quaid Morris
, Timothy R. Hughes, Brendan J. Frey:
GenXHC: a probabilistic generative model for cross-hybridization compensation in high-density genome-wide microarray data. ISMB (Supplement of Bioinformatics) 2005: 222-231 - [c6]Brendan J. Frey, Quaid Morris, Wen Zhang, Naveed Mohammad, Timothy R. Hughes:
GenRate: A Generative Model That Finds and Scores New Genes and Exons in Genomic Microarray Data. Pacific Symposium on Biocomputing 2005 - [c5]Brendan J. Frey, Quaid Morris, Mark D. Robinson, Timothy R. Hughes:
Finding Novel Transcripts in High-Resolution Genome-Wide Microarray Data Using the GenRate Model. RECOMB 2005: 66-82 - 2004
- [c4]Ofer Shai, Brendan J. Frey, Quaid Morris, Qun Pan, Christine Misquitta, Benjamin J. Blencowe:
Probabilistic Inference of Alternative Splicing Events in Microarray Data. NIPS 2004: 1241-1248 - 2003
- [c3]Quaid Morris, Brendan J. Frey:
Denoising and Untangling Graphs Using Degree Priors. NIPS 2003: 385-392 - 2001
- [c2]Quaid Morris:
Recognition Networks for Approximate Inference in BN20 Networks. UAI 2001: 370-377
1990 – 1999
- 1996
- [c1]Jeffrey Mark Siskind
, Quaid Morris
:
A Maximum-Likelihood Approach to Visual Event Classification. ECCV (2) 1996: 347-360
Coauthor Index

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last updated on 2024-10-07 21:16 CEST by the dblp team
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