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Yuri I. Wolf
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2020 – today
- 2024
- [c4]Sagi Snir, Yuri I. Wolf, Shelly Brezner, Eugene V. Koonin, Mike Steel:
On the Distribution of Synteny Blocks Under a Neutral Model of Genome Dynamics. RECOMB-CG 2024: 173-188 - 2021
- [j18]Michael Y. Galperin
, Yuri I. Wolf
, Kira S. Makarova
, Roberto Vera Alvarez
, David Landsman
, Eugene V. Koonin
:
COG database update: focus on microbial diversity, model organisms, and widespread pathogens. Nucleic Acids Res. 49(Database-Issue): D274-D281 (2021) - [i2]Vitaly Vanchurin, Yuri I. Wolf, Mikhail I. Katsnelson, Eugene V. Koonin:
Towards a Theory of Evolution as Multilevel Learning. CoRR abs/2110.14602 (2021) - [i1]Vitaly Vanchurin, Yuri I. Wolf, Eugene V. Koonin, Mikhail I. Katsnelson:
Thermodynamics of Evolution and the Origin of Life. CoRR abs/2110.15066 (2021)
2010 – 2019
- 2019
- [j17]Michael Y. Galperin
, David M. Kristensen, Kira S. Makarova, Yuri I. Wolf
, Eugene V. Koonin
:
Microbial genome analysis: the COG approach. Briefings Bioinform. 20(4): 1063-1070 (2019) - 2017
- [j16]David M. Kristensen, Yuri I. Wolf
, Eugene V. Koonin:
ATGC database and ATGC-COGs: an updated resource for micro- and macro-evolutionary studies of prokaryotic genomes and protein family annotation. Nucleic Acids Res. 45(Database-Issue): D210-D218 (2017) - 2015
- [j15]Michael Y. Galperin
, Kira S. Makarova, Yuri I. Wolf
, Eugene V. Koonin:
Expanded microbial genome coverage and improved protein family annotation in the COG database. Nucleic Acids Res. 43(Database-Issue): 261-269 (2015) - 2013
- [j14]David Managadze, Alexander E. Lobkovsky, Yuri I. Wolf
, Svetlana A. Shabalina
, Igor B. Rogozin
, Eugene V. Koonin:
The Vast, Conserved Mammalian lincRNome. PLoS Comput. Biol. 9(2) (2013) - 2012
- [j13]Sagi Snir, Yuri I. Wolf
, Eugene V. Koonin:
Universal Pacemaker of Genome Evolution. PLoS Comput. Biol. 8(11) (2012) - 2011
- [j12]David M. Kristensen, Yuri I. Wolf
, Arcady R. Mushegian
, Eugene V. Koonin:
Computational methods for Gene Orthology inference. Briefings Bioinform. 12(5): 379-391 (2011) - [j11]Eugene V. Koonin, Pere Puigbò
, Yuri I. Wolf
:
Comparison of Phylogenetic Trees and Search for a Central Trend in the "Forest of Life". J. Comput. Biol. 18(7): 917-924 (2011) - [j10]Alexander E. Lobkovsky, Yuri I. Wolf
, Eugene V. Koonin:
Predictability of Evolutionary Trajectories in Fitness Landscapes. PLoS Comput. Biol. 7(12) (2011) - 2010
- [j9]Liran Carmel, Yuri I. Wolf
, Igor B. Rogozin
, Eugene V. Koonin:
EREM: Parameter Estimation and Ancestral Reconstruction by Expectation-Maximization Algorithm for a Probabilistic Model of Genomic Binary Characters Evolution. Adv. Bioinformatics 2010: 167408:1-167408:4 (2010) - [j8]David M. Kristensen, Lavanya Kannan, Michael K. Coleman, Yuri I. Wolf
, Alexander Sorokin, Eugene V. Koonin, Arcady R. Mushegian
:
A low-polynomial algorithm for assembling clusters of orthologous groups from intergenomic symmetric best matches. Bioinform. 26(12): 1481-1487 (2010)
2000 – 2009
- 2009
- [j7]Pavel S. Novichkov, Igor Ratnere, Yuri I. Wolf
, Eugene V. Koonin, Inna Dubchak:
ATGC: a database of orthologous genes from closely related prokaryotic genomes and a research platform for microevolution of prokaryotes. Nucleic Acids Res. 37(Database-Issue): 448-454 (2009) - 2005
- [c3]Liran Carmel, Igor B. Rogozin
, Yuri I. Wolf
, Eugene V. Koonin:
An Expectation-Maximization Algorithm for Analysis of Evolution of Exon-Intron Structure of Eukaryotic Genes. Comparative Genomics 2005: 35-46 - 2004
- [j6]Igor B. Rogozin, Kira S. Makarova, Yuri I. Wolf
, Eugene V. Koonin:
Computational approaches for the analysis of gene neighbourhoods in prokaryotic genomes. Briefings Bioinform. 5(2): 131-149 (2004) - 2003
- [j5]Georgy P. Karev, Yuri I. Wolf
, Eugene V. Koonin:
Simple stochastic birth andz death models of genome evolution: was there enough time for us to evolve? Bioinform. 19(15): 1889-1900 (2003) - [j4]Roman L. Tatusov, Natalie D. Fedorova, John D. Jackson, Aviva R. Jacobs, Boris Kiryutin, Eugene V. Koonin, Dmitri M. Krylov, Raja Mazumder
, Sergei L. Mekhedov, Anastasia N. Nikolskaya, B. Sridhar Rao, Sergei Smirnov, Alexander V. Sverdlov, Sona Vasudevan, Yuri I. Wolf
, Jodie J. Yin, Darren A. Natale
:
The COG database: an updated version includes eukaryotes. BMC Bioinform. 4: 41 (2003) - 2000
- [j3]Piotr Berman, Zheng Zhang, Yuri I. Wolf, Eugene V. Koonin, Webb Miller:
Winnowing Sequences from a Database Search. J. Comput. Biol. 7(1-2): 293-302 (2000)
1990 – 1999
- 1999
- [j2]Alejandro A. Schäffer, Yuri I. Wolf, Chris P. Ponting
, Eugene V. Koonin, L. Aravind, Stephen F. Altschul:
IMPALA: matching a protein sequence against a collection of PSI-BLAST-constructed position-specific score matrices. Bioinform. 15(12): 1000-1011 (1999) - [c2]Piotr Berman, Zheng Zhang, Yuri I. Wolf, Eugene V. Koonin, Webb Miller:
Winnowing sequences from a database search. RECOMB 1999: 50-58 - 1996
- [c1]Igor A. Seledtsov, Yuri I. Wolf, Dmitry Korshunov, Kira S. Makarova:
Sequence Similarity Significance: Computer Simulations and Analytically obtained Bounds. German Conference on Bioinformatics 1996: 305-307 - 1992
- [j1]Kira S. Makarova, A. V. Mazin, Yuri I. Wolf, V. V. Soloviev:
DIROM: an experimental design interactive system for directed mutagenesis and nucleic acids engineering. Comput. Appl. Biosci. 8(5): 425-431 (1992)
Coauthor Index
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