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21st RECOMB-CG 2024: Boston, MA, USA

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Céline Scornavacca, Maribel Hernández-Rosales:
Comparative Genomics - 21st International Conference, RECOMB-CG 2024, Boston, MA, USA, April 27-28, 2024, Proceedings. Lecture Notes in Computer Science 14616, Springer 2024, ISBN 978-3-031-58071-0

Phylogenetic Networks

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  - conf/recombcg/WarnowTE24
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Tandy J. Warnow, Yasamin Tabatabaee, Steven N. Evans:
Statistically Consistent Estimation of Rooted and Unrooted Level-1 Phylogenetic Networks from SNP Data. 3-23
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  - conf/recombcg/SanchezL24
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Alitzel López Sánchez, Manuel Lafond:
Galled Perfect Transfer Networks. 24-43

Homology and Phylogenetic Reconstruction

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Wend Yam Donald Davy Ouedraogo, Aïda Ouangraoua:
Inferring Transcript Phylogenies from Transcript Ortholog Clusters. 47-68
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Yoav Dvir, Shelly Brezner, Sagi Snir:
Gene-Adjacency-Based Phylogenetics Under a Stochastic Gain-Loss Model. 69-85

Tools for Evolution Reconstruction

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  - conf/recombcg/RamirezRafaelKASEHSH24
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José Antonio Ramírez-Rafael, Annachiara Korchmaros, Katia Aviña-Padilla, Alitzel López Sánchez, Andrea Arlette España-Tinajero, Marc Hellmuth, Peter F. Stadler, Maribel Hernández-Rosales:
REvolutionH-tl: Reconstruction of Evolutionary Histories tool. 89-109
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Prottoy Saha, Md Shamiul Islam, Tasnim Rahman, Adiba Shaira, Kazi Noshin, Rezwana Reaz, Md. Shamsuzzoha Bayzid:
Gene Tree Parsimony in the Presence of Gene Duplication, Loss, and Incomplete Lineage Sorting. 110-128
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  - conf/recombcg/WeinerFGB24
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Samson Weiner, Yutian Feng, J. Peter Gogarten, Mukul S. Bansal:
Assessing the Potential of Gene Tree Parsimony for Microbial Phylogenomics. 129-149

Genome Rearrangements

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Klairton Lima Brito, Alexsandro Oliveira Alexandrino, Gabriel Siqueira, Andre Rodrigues Oliveira, Ulisses Dias, Zanoni Dias:
Maximum Alternating Balanced Cycle Decomposition and Applications in Sorting by Intergenic Operations Problems. 153-172
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Sagi Snir, Yuri I. Wolf, Shelly Brezner, Eugene V. Koonin, Mike A. Steel:
On the Distribution of Synteny Blocks Under a Neutral Model of Genome Dynamics. 173-188
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Poly H. da Silva, Arash Jamshidpey, David Sankoff:
Sampling Gene Adjacencies and Geodesic Points of Random Genomes. 189-210

Genome Evolution

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Gabriel Moreno-Hagelsieb:
Transcription Factors Across the Escherichia coli Pangenome: A 3D Perspective. 213-225
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Tal Gutman, Tamir Tuller:
Revisiting the Effects of MDR1 Variants Using Computational Approaches. 226-247
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Alma Davidson, Marina Parr, Franziska Totzeck, Alexander Churkin, Danny Barash, Dmitrij Frishman, Tamir Tuller:
Evidence of Increased Adaptation of Omicron SARS-CoV-2 Codons to Humans. 248-270

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